- [ ] additional_fasta - [ ] bbsplit_index | bbsplit - [x] fasta - [ ] gene_bed | bed12 - [x] gff - [x] gtf - [x] hisat2_index | hisat2 - [x] kallisto_index | kallisto - [x] rsem_index | rsem - [x] salmon_index | salmon - [ ] sortmerna_index | sortmerna - [x] star_index | star - [x] transcript_fasta