prepare RC 0.1 (#70)

maxulysse · web-flow · commit 3ab25b0cdadc · 2024-12-30T11:13:13.000+01:00
* prepare RC 0.1

* update snapshots
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -3,9 +3,10 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-## v1.0dev - [date]
+## [0.1](https://github.com/nf-core/references/releases/tag/0.1) - Tar Tarasque
 
-Initial release of nf-core/references, created with the [nf-core](https://nf-co.re/) template.
+Initial pre-release of nf-core/references, created with the [nf-core](https://nf-co.re/) template.
+Tar is a dark grey color ( #383838), and the Tarasque is a legendary dragon from the South of France.
 
 ### Added
 
diff --git a/assets/multiqc_config.yml b/assets/multiqc_config.yml
@@ -1,7 +1,7 @@
 report_comment: >
-  This report has been generated by the <a href="https://github.com/nf-core/references/tree/dev" target="_blank">nf-core/references</a>
+  This report has been generated by the <a href="https://github.com/nf-core/references/releases/tag/0.1" target="_blank">nf-core/references</a>
   analysis pipeline. For information about how to interpret these results, please see the
-  <a href="https://nf-co.re/references/dev/docs/output" target="_blank">documentation</a>.
+  <a href="https://nf-co.re/references/0.1/docs/output" target="_blank">documentation</a>.
 report_section_order:
   "nf-core-references-methods-description":
     order: -1000
diff --git a/nextflow.config b/nextflow.config
@@ -224,7 +224,7 @@ manifest {
     description     = """help community build references"""
     mainScript      = 'main.nf'
     nextflowVersion = '!>=24.10.1'
-    version         = '1.0dev'
+    version         = '0.1'
     doi             = ''
 }
 
diff --git a/tests/hisat2.nf.test.snap b/tests/hisat2.nf.test.snap
@@ -7,7 +7,7 @@
                     "hisat2": "2.2.1"
                 },
                 "Workflow": {
-                    "nf-core/references": "v1.0dev"
+                    "nf-core/references": "v0.1"
                 }
             },
             [
@@ -71,7 +71,7 @@
                     "hisat2": "2.2.1"
                 },
                 "Workflow": {
-                    "nf-core/references": "v1.0dev"
+                    "nf-core/references": "v0.1"
                 }
             },
             [
diff --git a/tests/kallisto.nf.test.snap b/tests/kallisto.nf.test.snap
@@ -14,7 +14,7 @@
                     "star": "2.7.10a"
                 },
                 "Workflow": {
-                    "nf-core/references": "v1.0dev"
+                    "nf-core/references": "v0.1"
                 }
             },
             [
@@ -63,7 +63,7 @@
                     "kallisto": "0.51.1"
                 },
                 "Workflow": {
-                    "nf-core/references": "v1.0dev"
+                    "nf-core/references": "v0.1"
                 }
             },
             [
diff --git a/tests/multiple.nf.test.snap b/tests/multiple.nf.test.snap
@@ -7,7 +7,7 @@
                     "tabix": 1.2
                 },
                 "Workflow": {
-                    "nf-core/references": "v1.0dev"
+                    "nf-core/references": "v0.1"
                 }
             },
             [
@@ -63,7 +63,7 @@
                     "samtools": 1.21
                 },
                 "Workflow": {
-                    "nf-core/references": "v1.0dev"
+                    "nf-core/references": "v0.1"
                 }
             },
             [
diff --git a/tests/rnaseq.nf.test.snap b/tests/rnaseq.nf.test.snap
@@ -21,7 +21,7 @@
                     "gawk": "5.1.0"
                 },
                 "Workflow": {
-                    "nf-core/references": "v1.0dev"
+                    "nf-core/references": "v0.1"
                 }
             },
             [
diff --git a/tests/rsem.nf.test.snap b/tests/rsem.nf.test.snap
@@ -8,7 +8,7 @@
                     "star": "2.7.10a"
                 },
                 "Workflow": {
-                    "nf-core/references": "v1.0dev"
+                    "nf-core/references": "v0.1"
                 }
             },
             [
@@ -105,7 +105,7 @@
                     "star": "2.7.10a"
                 },
                 "Workflow": {
-                    "nf-core/references": "v1.0dev"
+                    "nf-core/references": "v0.1"
                 }
             },
             [
diff --git a/tests/salmon.nf.test.snap b/tests/salmon.nf.test.snap
@@ -14,7 +14,7 @@
                     "salmon": "1.10.3"
                 },
                 "Workflow": {
-                    "nf-core/references": "v1.0dev"
+                    "nf-core/references": "v0.1"
                 }
             },
             [
@@ -87,7 +87,7 @@
                     "salmon": "1.10.3"
                 },
                 "Workflow": {
-                    "nf-core/references": "v1.0dev"
+                    "nf-core/references": "v0.1"
                 }
             },
             [
diff --git a/tests/samtools.nf.test.snap b/tests/samtools.nf.test.snap
@@ -4,7 +4,7 @@
             1,
             {
                 "Workflow": {
-                    "nf-core/references": "v1.0dev"
+                    "nf-core/references": "v0.1"
                 }
             },
             [
@@ -41,7 +41,7 @@
                     "samtools": 1.21
                 },
                 "Workflow": {
-                    "nf-core/references": "v1.0dev"
+                    "nf-core/references": "v0.1"
                 }
             },
             [
@@ -89,7 +89,7 @@
                     "gawk": "5.3.0"
                 },
                 "Workflow": {
-                    "nf-core/references": "v1.0dev"
+                    "nf-core/references": "v0.1"
                 }
             },
             [
diff --git a/tests/sarek.nf.test.snap b/tests/sarek.nf.test.snap
@@ -22,7 +22,7 @@
                     "tabix": 1.2
                 },
                 "Workflow": {
-                    "nf-core/references": "v1.0dev"
+                    "nf-core/references": "v0.1"
                 }
             },
             [
diff --git a/tests/tabix.nf.test.snap b/tests/tabix.nf.test.snap
@@ -4,7 +4,7 @@
             1,
             {
                 "Workflow": {
-                    "nf-core/references": "v1.0dev"
+                    "nf-core/references": "v0.1"
                 }
             },
             [
@@ -38,7 +38,7 @@
                     "tabix": 1.2
                 },
                 "Workflow": {
-                    "nf-core/references": "v1.0dev"
+                    "nf-core/references": "v0.1"
                 }
             },
             [
diff --git a/tests/wbcel235.nf.test.snap b/tests/wbcel235.nf.test.snap
@@ -31,7 +31,7 @@
                     "gawk": "5.1.0"
                 },
                 "Workflow": {
-                    "nf-core/references": "v1.0dev"
+                    "nf-core/references": "v0.1"
                 }
             },
             [

Original file line number	Diff line number	Diff line change
`@@ -224,7 +224,7 @@ manifest {`
`224`	`224`	`description = """help community build references"""`
`225`	`225`	`mainScript = 'main.nf'`
`226`	`226`	`nextflowVersion = '!>=24.10.1'`
`227`		`- version = '1.0dev'`
	`227`	`+ version = '0.1'`
`228`	`228`	`doi = ''`
`229`	`229`	`}`
`230`	`230`
Original file line number	Diff line number	Diff line change
`@@ -7,7 +7,7 @@`
`7`	`7`	`"hisat2": "2.2.1"`
`8`	`8`	`},`
`9`	`9`	`"Workflow": {`
`10`		`- "nf-core/references": "v1.0dev"`
	`10`	`+ "nf-core/references": "v0.1"`
`11`	`11`	`}`
`12`	`12`	`},`
`13`	`13`	`[`
`@@ -71,7 +71,7 @@`
`71`	`71`	`"hisat2": "2.2.1"`
`72`	`72`	`},`
`73`	`73`	`"Workflow": {`
`74`		`- "nf-core/references": "v1.0dev"`
	`74`	`+ "nf-core/references": "v0.1"`
`75`	`75`	`}`
`76`	`76`	`},`
`77`	`77`	`[`
Original file line number	Diff line number	Diff line change
`@@ -14,7 +14,7 @@`
`14`	`14`	`"star": "2.7.10a"`
`15`	`15`	`},`
`16`	`16`	`"Workflow": {`
`17`		`- "nf-core/references": "v1.0dev"`
	`17`	`+ "nf-core/references": "v0.1"`
`18`	`18`	`}`
`19`	`19`	`},`
`20`	`20`	`[`
`@@ -63,7 +63,7 @@`
`63`	`63`	`"kallisto": "0.51.1"`
`64`	`64`	`},`
`65`	`65`	`"Workflow": {`
`66`		`- "nf-core/references": "v1.0dev"`
	`66`	`+ "nf-core/references": "v0.1"`
`67`	`67`	`}`
`68`	`68`	`},`
`69`	`69`	`[`
Original file line number	Diff line number	Diff line change
`@@ -7,7 +7,7 @@`
`7`	`7`	`"tabix": 1.2`
`8`	`8`	`},`
`9`	`9`	`"Workflow": {`
`10`		`- "nf-core/references": "v1.0dev"`
	`10`	`+ "nf-core/references": "v0.1"`
`11`	`11`	`}`
`12`	`12`	`},`
`13`	`13`	`[`
`@@ -63,7 +63,7 @@`
`63`	`63`	`"samtools": 1.21`
`64`	`64`	`},`
`65`	`65`	`"Workflow": {`
`66`		`- "nf-core/references": "v1.0dev"`
	`66`	`+ "nf-core/references": "v0.1"`
`67`	`67`	`}`
`68`	`68`	`},`
`69`	`69`	`[`
Original file line number	Diff line number	Diff line change
`@@ -21,7 +21,7 @@`
`21`	`21`	`"gawk": "5.1.0"`
`22`	`22`	`},`
`23`	`23`	`"Workflow": {`
`24`		`- "nf-core/references": "v1.0dev"`
	`24`	`+ "nf-core/references": "v0.1"`
`25`	`25`	`}`
`26`	`26`	`},`
`27`	`27`	`[`
Original file line number	Diff line number	Diff line change
`@@ -8,7 +8,7 @@`
`8`	`8`	`"star": "2.7.10a"`
`9`	`9`	`},`
`10`	`10`	`"Workflow": {`
`11`		`- "nf-core/references": "v1.0dev"`
	`11`	`+ "nf-core/references": "v0.1"`
`12`	`12`	`}`
`13`	`13`	`},`
`14`	`14`	`[`
`@@ -105,7 +105,7 @@`
`105`	`105`	`"star": "2.7.10a"`
`106`	`106`	`},`
`107`	`107`	`"Workflow": {`
`108`		`- "nf-core/references": "v1.0dev"`
	`108`	`+ "nf-core/references": "v0.1"`
`109`	`109`	`}`
`110`	`110`	`},`
`111`	`111`	`[`
Original file line number	Diff line number	Diff line change
`@@ -4,7 +4,7 @@`
`4`	`4`	`1,`
`5`	`5`	`{`
`6`	`6`	`"Workflow": {`
`7`		`- "nf-core/references": "v1.0dev"`
	`7`	`+ "nf-core/references": "v0.1"`
`8`	`8`	`}`
`9`	`9`	`},`
`10`	`10`	`[`
`@@ -41,7 +41,7 @@`
`41`	`41`	`"samtools": 1.21`
`42`	`42`	`},`
`43`	`43`	`"Workflow": {`
`44`		`- "nf-core/references": "v1.0dev"`
	`44`	`+ "nf-core/references": "v0.1"`
`45`	`45`	`}`
`46`	`46`	`},`
`47`	`47`	`[`
`@@ -89,7 +89,7 @@`
`89`	`89`	`"gawk": "5.3.0"`
`90`	`90`	`},`
`91`	`91`	`"Workflow": {`
`92`		`- "nf-core/references": "v1.0dev"`
	`92`	`+ "nf-core/references": "v0.1"`
`93`	`93`	`}`
`94`	`94`	`},`
`95`	`95`	`[`