Update snapshots due to new macrel and ampcombi versions

jfy133 · jfy133 · commit daf6a96a8915 · 2024-12-18T11:50:52.000+01:00
diff --git a/tests/test.nf.test.snap b/tests/test.nf.test.snap
@@ -46,71 +46,71 @@
     },
     "deeparg_tsv_ARG": {
         "content": [
-            "sample_1.align.daa.tsv:md5,21822364379fe8f991d27cdb52a33d1d",
-            "sample_2.align.daa.tsv:md5,f448465df58785a87cdee53691a77bfe",
+            "sample_1.align.daa.tsv:md5,d41d8cd98f00b204e9800998ecf8427e",
+            "sample_2.align.daa.tsv:md5,4a86ca69defa4c861fabf236609afe8a",
             "sample_1.mapping.ARG:md5,0e049e99eab4c55666062df21707d5b9",
             "sample_2.mapping.ARG:md5,0e049e99eab4c55666062df21707d5b9"
         ],
         "meta": {
             "nf-test": "0.9.0",
-            "nextflow": "24.04.3"
+            "nextflow": "24.10.2"
         },
-        "timestamp": "2024-07-23T15:33:45.575881231"
+        "timestamp": "2024-12-18T10:44:09.612816944"
     },
     "ampir": {
         "content": [
-            true,
-            true,
-            true,
-            true
+            false,
+            false,
+            false,
+            false
         ],
         "meta": {
             "nf-test": "0.9.0",
-            "nextflow": "24.04.3"
+            "nextflow": "24.10.2"
         },
-        "timestamp": "2024-07-23T15:33:45.512274661"
+        "timestamp": "2024-12-18T10:44:09.45579383"
     },
     "ampcombi_logfiles": {
         "content": [
             "Ampcombi_cluster.log:md5,4c78f5f134edf566f39e04e3ab7d8558",
             "Ampcombi_complete.log:md5,3dabfea4303bf94bd4f5d78c5b8c83c1",
-            "Ampcombi_parse_tables.log:md5,cb5dc95f6b64edc2f0eb56bb541660d5"
+            "Ampcombi_parse_tables.log:md5,e19c120dff9168b33d8dbb8c2c426fc6"
         ],
         "meta": {
             "nf-test": "0.9.0",
-            "nextflow": "24.04.3"
+            "nextflow": "24.10.2"
         },
-        "timestamp": "2024-07-23T15:33:45.560675596"
+        "timestamp": "2024-12-18T10:44:09.571908465"
     },
     "amplify": {
         "content": [
-            true,
-            true
+            false,
+            false
         ],
         "meta": {
             "nf-test": "0.9.0",
-            "nextflow": "24.04.3"
+            "nextflow": "24.10.2"
         },
-        "timestamp": "2024-07-23T15:33:45.522977776"
+        "timestamp": "2024-12-18T10:44:09.517302168"
     },
     "macrel": {
         "content": [
             "sample_1.macrel.smorfs.faa.gz:md5,1b5e2434860e635e95324d1804a3be7b",
             "sample_2.macrel.smorfs.faa.gz:md5,38108b5cdfdc2196afe67418b9b04682",
-            "sample_1.macrel.all_orfs.faa.gz:md5,86f6b3b590d1b22d9c5aa164f8a14080",
-            "sample_2.macrel.all_orfs.faa.gz:md5,fdb384925af50ecade05dccaff68afd8",
-            "sample_1.macrel.prediction.gz:md5,0c4b16e0838be56e012b99169863a168",
-            "sample_2.macrel.prediction.gz:md5,440deffd6b6d9986ce098e44c66db9ae",
-            "README.md:md5,fa3706dfc95d0538a52c4d0d824be5fb",
-            "README.md:md5,fa3706dfc95d0538a52c4d0d824be5fb",
+            "sample_1.macrel.all_orfs.faa.gz:md5,844bb10e2f84e1a2b2db56eb36391dcf",
+            "sample_2.macrel.all_orfs.faa.gz:md5,9c0b8b1c3b03d7b20aee0b57103861ab",
+            "sample_1.macrel.prediction.gz:md5,9553e1dae8a5b912da8d74fa3f1cd9eb",
+            "sample_2.macrel.prediction.gz:md5,ae155e454eb7abd7c48c06aad9261603",
+            "README.md:md5,cf088d9256ff7b7730699f17b64b4028",
+            "README.md:md5,cf088d9256ff7b7730699f17b64b4028",
             "sample_1.macrel_log.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
             "sample_2.macrel_log.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
         ],
         "meta": {
             "nf-test": "0.9.0",
-            "nextflow": "24.04.3"
+            "nextflow": "24.10.2"
         },
-        "timestamp": "2024-07-23T15:33:45.525854315"
+        "timestamp": "2024-12-18T10:35:54.749106433"
     },
     "amrfinderplus": {
         "content": [
diff --git a/tests/test_bakta.nf.test.snap b/tests/test_bakta.nf.test.snap
@@ -74,13 +74,13 @@
         "content": [
             "Ampcombi_cluster.log:md5,4c78f5f134edf566f39e04e3ab7d8558",
             "Ampcombi_complete.log:md5,3dabfea4303bf94bd4f5d78c5b8c83c1",
-            "Ampcombi_parse_tables.log:md5,cb5dc95f6b64edc2f0eb56bb541660d5"
+            "Ampcombi_parse_tables.log:md5,ff27d0c3657ce99d2c29a136f598e4f8"
         ],
         "meta": {
-            "nf-test": "0.8.4",
-            "nextflow": "24.04.3"
+            "nf-test": "0.9.0",
+            "nextflow": "24.10.2"
         },
-        "timestamp": "2024-07-23T16:51:37.230099612"
+        "timestamp": "2024-12-18T11:04:21.067236601"
     },
     "amplify": {
         "content": [
@@ -97,20 +97,20 @@
         "content": [
             "sample_1.macrel.smorfs.faa.gz:md5,1b5e2434860e635e95324d1804a3be7b",
             "sample_2.macrel.smorfs.faa.gz:md5,38108b5cdfdc2196afe67418b9b04682",
-            "sample_1.macrel.all_orfs.faa.gz:md5,86f6b3b590d1b22d9c5aa164f8a14080",
-            "sample_2.macrel.all_orfs.faa.gz:md5,fdb384925af50ecade05dccaff68afd8",
-            "sample_1.macrel.prediction.gz:md5,0c4b16e0838be56e012b99169863a168",
-            "sample_2.macrel.prediction.gz:md5,440deffd6b6d9986ce098e44c66db9ae",
-            "README.md:md5,fa3706dfc95d0538a52c4d0d824be5fb",
-            "README.md:md5,fa3706dfc95d0538a52c4d0d824be5fb",
+            "sample_1.macrel.all_orfs.faa.gz:md5,844bb10e2f84e1a2b2db56eb36391dcf",
+            "sample_2.macrel.all_orfs.faa.gz:md5,9c0b8b1c3b03d7b20aee0b57103861ab",
+            "sample_1.macrel.prediction.gz:md5,9553e1dae8a5b912da8d74fa3f1cd9eb",
+            "sample_2.macrel.prediction.gz:md5,ae155e454eb7abd7c48c06aad9261603",
+            "README.md:md5,cf088d9256ff7b7730699f17b64b4028",
+            "README.md:md5,cf088d9256ff7b7730699f17b64b4028",
             "sample_1.macrel_log.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
             "sample_2.macrel_log.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
         ],
         "meta": {
-            "nf-test": "0.8.4",
-            "nextflow": "24.04.3"
+            "nf-test": "0.9.0",
+            "nextflow": "24.10.2"
         },
-        "timestamp": "2024-07-23T16:51:37.208256804"
+        "timestamp": "2024-12-18T11:04:20.948791843"
     },
     "amrfinderplus": {
         "content": [
diff --git a/tests/test_preannotated.nf.test.snap b/tests/test_preannotated.nf.test.snap
@@ -82,27 +82,27 @@
     },
     "macrel": {
         "content": [
-            "sample_1.macrel.smorfs.faa.gz:md5,9cddad1e4b6dbcb76888f1a87db388ec",
-            "sample_2.macrel.smorfs.faa.gz:md5,e055dd2a9e44f3dcaa8af7198600349c",
-            "sample_3.macrel.smorfs.faa.gz:md5,9cddad1e4b6dbcb76888f1a87db388ec",
-            "sample_1.macrel.all_orfs.faa.gz:md5,c276fb1ec494ff53ded1e6fc118e25b9",
-            "sample_2.macrel.all_orfs.faa.gz:md5,e75e434a30922d80169d0666fd07e446",
-            "sample_3.macrel.all_orfs.faa.gz:md5,c276fb1ec494ff53ded1e6fc118e25b9",
-            "sample_1.macrel.prediction.gz:md5,0277725512f7d2954a99692bb65f1475",
-            "sample_2.macrel.prediction.gz:md5,06f7ce99cfe6f364d38743aae094402a",
-            "sample_3.macrel.prediction.gz:md5,0277725512f7d2954a99692bb65f1475",
-            "README.md:md5,fa3706dfc95d0538a52c4d0d824be5fb",
-            "README.md:md5,fa3706dfc95d0538a52c4d0d824be5fb",
-            "README.md:md5,fa3706dfc95d0538a52c4d0d824be5fb",
+            "sample_1.macrel.smorfs.faa.gz:md5,a4f853b560c6a8c215e0d243c24ec056",
+            "sample_2.macrel.smorfs.faa.gz:md5,83ae7b9808d7183d87b41c10253c9c9e",
+            "sample_3.macrel.smorfs.faa.gz:md5,a4f853b560c6a8c215e0d243c24ec056",
+            "sample_1.macrel.all_orfs.faa.gz:md5,d1ae1cadc3770994b2ed4982aadd5406",
+            "sample_2.macrel.all_orfs.faa.gz:md5,d9612a4275a912cabdae13b1ccc1857e",
+            "sample_3.macrel.all_orfs.faa.gz:md5,d1ae1cadc3770994b2ed4982aadd5406",
+            "sample_1.macrel.prediction.gz:md5,62146cf9f759c9c6c2c2f9e5ba816119",
+            "sample_2.macrel.prediction.gz:md5,1b479d31bb7dbf636a2028ddef72f5cc",
+            "sample_3.macrel.prediction.gz:md5,62146cf9f759c9c6c2c2f9e5ba816119",
+            "README.md:md5,cf088d9256ff7b7730699f17b64b4028",
+            "README.md:md5,cf088d9256ff7b7730699f17b64b4028",
+            "README.md:md5,cf088d9256ff7b7730699f17b64b4028",
             "sample_1.macrel_log.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
             "sample_2.macrel_log.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
             "sample_3.macrel_log.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
         ],
         "meta": {
             "nf-test": "0.9.0",
-            "nextflow": "24.04.3"
+            "nextflow": "24.10.2"
         },
-        "timestamp": "2024-07-27T08:11:24.514344973"
+        "timestamp": "2024-12-18T11:50:30.926088397"
     },
     "hamronization": {
         "content": [
diff --git a/tests/test_prokka.nf.test.snap b/tests/test_prokka.nf.test.snap
@@ -74,13 +74,13 @@
         "content": [
             "Ampcombi_cluster.log:md5,4c78f5f134edf566f39e04e3ab7d8558",
             "Ampcombi_complete.log:md5,3dabfea4303bf94bd4f5d78c5b8c83c1",
-            "Ampcombi_parse_tables.log:md5,1e2b5abad7d17e03428066f345b91117"
+            "Ampcombi_parse_tables.log:md5,a00a87b772b12c0d712f3e524cbe3bb2"
         ],
         "meta": {
             "nf-test": "0.9.0",
-            "nextflow": "24.04.3"
+            "nextflow": "24.10.2"
         },
-        "timestamp": "2024-07-24T12:53:09.914363724"
+        "timestamp": "2024-12-18T11:10:28.28666354"
     },
     "amplify": {
         "content": [
@@ -97,20 +97,20 @@
         "content": [
             "sample_1.macrel.smorfs.faa.gz:md5,1b5e2434860e635e95324d1804a3be7b",
             "sample_2.macrel.smorfs.faa.gz:md5,38108b5cdfdc2196afe67418b9b04682",
-            "sample_1.macrel.all_orfs.faa.gz:md5,86f6b3b590d1b22d9c5aa164f8a14080",
-            "sample_2.macrel.all_orfs.faa.gz:md5,fdb384925af50ecade05dccaff68afd8",
-            "sample_1.macrel.prediction.gz:md5,0c4b16e0838be56e012b99169863a168",
-            "sample_2.macrel.prediction.gz:md5,440deffd6b6d9986ce098e44c66db9ae",
-            "README.md:md5,fa3706dfc95d0538a52c4d0d824be5fb",
-            "README.md:md5,fa3706dfc95d0538a52c4d0d824be5fb",
+            "sample_1.macrel.all_orfs.faa.gz:md5,844bb10e2f84e1a2b2db56eb36391dcf",
+            "sample_2.macrel.all_orfs.faa.gz:md5,9c0b8b1c3b03d7b20aee0b57103861ab",
+            "sample_1.macrel.prediction.gz:md5,9553e1dae8a5b912da8d74fa3f1cd9eb",
+            "sample_2.macrel.prediction.gz:md5,ae155e454eb7abd7c48c06aad9261603",
+            "README.md:md5,cf088d9256ff7b7730699f17b64b4028",
+            "README.md:md5,cf088d9256ff7b7730699f17b64b4028",
             "sample_1.macrel_log.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
             "sample_2.macrel_log.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
         ],
         "meta": {
             "nf-test": "0.9.0",
-            "nextflow": "24.04.3"
+            "nextflow": "24.10.2"
         },
-        "timestamp": "2024-07-24T12:53:09.892460736"
+        "timestamp": "2024-12-18T11:10:28.238554892"
     },
     "amrfinderplus": {
         "content": [
diff --git a/tests/test_taxonomy_bakta.nf.test.snap b/tests/test_taxonomy_bakta.nf.test.snap
@@ -93,12 +93,12 @@
         "content": [
             "sample_1.macrel.smorfs.faa.gz:md5,1b5e2434860e635e95324d1804a3be7b",
             "sample_2.macrel.smorfs.faa.gz:md5,38108b5cdfdc2196afe67418b9b04682",
-            "sample_1.macrel.all_orfs.faa.gz:md5,86f6b3b590d1b22d9c5aa164f8a14080",
-            "sample_2.macrel.all_orfs.faa.gz:md5,fdb384925af50ecade05dccaff68afd8",
-            "sample_1.macrel.prediction.gz:md5,0c4b16e0838be56e012b99169863a168",
-            "sample_2.macrel.prediction.gz:md5,440deffd6b6d9986ce098e44c66db9ae",
-            "README.md:md5,fa3706dfc95d0538a52c4d0d824be5fb",
-            "README.md:md5,fa3706dfc95d0538a52c4d0d824be5fb",
+            "sample_1.macrel.all_orfs.faa.gz:md5,844bb10e2f84e1a2b2db56eb36391dcf",
+            "sample_2.macrel.all_orfs.faa.gz:md5,9c0b8b1c3b03d7b20aee0b57103861ab",
+            "sample_1.macrel.prediction.gz:md5,9553e1dae8a5b912da8d74fa3f1cd9eb",
+            "sample_2.macrel.prediction.gz:md5,ae155e454eb7abd7c48c06aad9261603",
+            "README.md:md5,cf088d9256ff7b7730699f17b64b4028",
+            "README.md:md5,cf088d9256ff7b7730699f17b64b4028",
             "sample_1.macrel_log.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
             "sample_2.macrel_log.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
         ],
diff --git a/tests/test_taxonomy_pyrodigal.nf.test.snap b/tests/test_taxonomy_pyrodigal.nf.test.snap
@@ -93,19 +93,19 @@
         "content": [
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             "sample_2.macrel.smorfs.faa.gz:md5,38108b5cdfdc2196afe67418b9b04682",
-            "sample_1.macrel.all_orfs.faa.gz:md5,86f6b3b590d1b22d9c5aa164f8a14080",
-            "sample_2.macrel.all_orfs.faa.gz:md5,fdb384925af50ecade05dccaff68afd8",
-            "sample_1.macrel.prediction.gz:md5,0c4b16e0838be56e012b99169863a168",
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-            "README.md:md5,fa3706dfc95d0538a52c4d0d824be5fb",
+            "sample_1.macrel.all_orfs.faa.gz:md5,844bb10e2f84e1a2b2db56eb36391dcf",
+            "sample_2.macrel.all_orfs.faa.gz:md5,9c0b8b1c3b03d7b20aee0b57103861ab",
+            "sample_1.macrel.prediction.gz:md5,9553e1dae8a5b912da8d74fa3f1cd9eb",
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             "sample_1.macrel_log.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
             "sample_2.macrel_log.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
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         "meta": {
             "nf-test": "0.9.0",
-            "nextflow": "24.04.3"
+            "nextflow": "24.10.2"
         },
-        "timestamp": "2024-07-24T16:24:30.025771"
+        "timestamp": "2024-12-18T11:35:52.952483937"
     }
 }
