diff --git a/defaults/clade_display_names.yml b/defaults/clade_display_names.yml index 4aff0a9bc..f550d3437 100644 --- a/defaults/clade_display_names.yml +++ b/defaults/clade_display_names.yml @@ -40,3 +40,4 @@ 23I: 23I (BA.2.86) 24A: 24A (JN.1) 24B: 24B (JN.1.11.1) +24C: 24C (KP.3) diff --git a/defaults/clade_emergence_dates.tsv b/defaults/clade_emergence_dates.tsv index 94da5c227..0cadee025 100644 --- a/defaults/clade_emergence_dates.tsv +++ b/defaults/clade_emergence_dates.tsv @@ -42,3 +42,4 @@ Nextstrain_clade first_sequence 23I 2023-04-01 24A 2023-07-01 24B 2023-11-01 +24C 2023-12-01 diff --git a/defaults/clade_hierarchy.tsv b/defaults/clade_hierarchy.tsv index 66a3d25bc..32e60b1f7 100644 --- a/defaults/clade_hierarchy.tsv +++ b/defaults/clade_hierarchy.tsv @@ -40,3 +40,4 @@ clade parent WHO 23I 21L Omicron 24A 23I Omicron 24B 24A Omicron +24C 24B Omicron diff --git a/defaults/clades.tsv b/defaults/clades.tsv index ad468d263..c230791de 100644 --- a/defaults/clades.tsv +++ b/defaults/clades.tsv @@ -230,3 +230,6 @@ clade gene site alt 24B nuc 17334 T 24B nuc 22928 C 24B nuc 24872 T + +24C clade 24B +24C nuc 23039 G diff --git a/defaults/color_ordering.tsv b/defaults/color_ordering.tsv index 7c8e7cd3e..389b60a56 100644 --- a/defaults/color_ordering.tsv +++ b/defaults/color_ordering.tsv @@ -34040,6 +34040,7 @@ clade_membership 23H (HK.3) clade_membership 23I (BA.2.86) clade_membership 24A (JN.1) clade_membership 24B (JN.1.11.1) +clade_membership 24C (KP.3) ################ @@ -34060,6 +34061,10 @@ emerging_lineage HV.1 emerging_lienage GW.5 emerging_lineage JD.1 emerging_lineage XBB.1.41 +emerging_lineage LB.1 +emerging_lineage KP.2.3 +emerging_lineage JN.1.50 +emerging_lineage XDY ################ diff --git a/defaults/emerging_lineages.tsv b/defaults/emerging_lineages.tsv index 31bcadb1c..01d7b4276 100644 --- a/defaults/emerging_lineages.tsv +++ b/defaults/emerging_lineages.tsv @@ -220,6 +220,19 @@ clade gene site alt 23I nuc 15756 A 23I nuc 28958 A +24A clade 23I +24A nuc 11727 A +24A nuc 22926 C +24A nuc 27810 C + +24B clade 24A +24B nuc 7113 T +24B nuc 17334 T +24B nuc 22928 C +24B nuc 24872 T + +24C clade 24B +24C nuc 23039 G BA.2.3.20 clade 21L BA.2.3.20 nuc 6770 G @@ -309,3 +322,22 @@ JD.1 nuc 22928 C XBB.1.41 clade 22F XBB.1.41 nuc 1473 T XBB.1.41 nuc 20102 T + +LB.1 clade 24A +LB.1 nuc 22111 T +LB.1 nuc 22928 C +LB.1 nuc 22599 C + +KP.2.3 clade 24B +KP.2.3 nuc 22599 C +KP.2.3 nuc 25563 T + +JN.1.50 clade 24A +JN.1.50 nuc 9298 T +JN.1.50 nuc 22309 C +JN.1.50 nuc 22930 G + +XDY clade 24A +XDY nuc 19669 A +XDY nuc 22131 C +XDY nuc 23039 G