diff --git a/tests/functional/ancestral/cram/infer-amino-acid-sequences.t b/tests/functional/ancestral/cram/infer-amino-acid-sequences.t index d777b3b0c..0f8177e43 100644 --- a/tests/functional/ancestral/cram/infer-amino-acid-sequences.t +++ b/tests/functional/ancestral/cram/infer-amino-acid-sequences.t @@ -11,7 +11,8 @@ Infer ancestral nucleotide and amino acid sequences. > --genes ENV PRO \ > --translations $TESTDIR/../data/aa_sequences_%GENE.fasta \ > --output-node-data "$CRAMTMP/$TESTFILE/ancestral_mutations.json" \ - > --output-sequences "$CRAMTMP/$TESTFILE/ancestral_sequences.fasta" > /dev/null + > --output-sequences "$CRAMTMP/$TESTFILE/ancestral_sequences.fasta" \ + > --output-translations "$CRAMTMP/$TESTFILE/ancestral_aa_sequences_%GENE.fasta" > /dev/null Check that the reference length was correctly exported as the nuc annotation @@ -19,3 +20,8 @@ Check that the reference length was correctly exported as the nuc annotation "ENV": { "PRO": { "nuc": { + +Check that internal nodes have ancestral amino acid sequences. + + $ grep "NODE" "$CRAMTMP/$TESTFILE/ancestral_aa_sequences_ENV.fasta" | wc -l + \s*0 .* (re)