Use IQ-Tree

nextstrain · Nov 20, 2024 · f0fe3d3 · f0fe3d3
1 parent 828e323
commit f0fe3d3
Showing 1 changed file with 0 additions and 1 deletion.
diff --git a/phylogenetic/rules/construct_phylogeny.smk b/phylogenetic/rules/construct_phylogeny.smk
@@ -35,7 +35,6 @@ rule tree:
         augur tree \
             --alignment {input.alignment} \
             --output {output.tree} \
-            --method raxml \
             --nthreads {threads:q} 2>&1 | tee {log}
         """