From 7973167ed4e9ee33300711e2e48ccdb8fbd74fbf Mon Sep 17 00:00:00 2001
From: Jennifer Chang <jennifer.chang.bioinform@gmail.com>
Date: Wed, 13 Nov 2024 14:03:30 -0800
Subject: [PATCH] Add host genus and type coloring to trees

---
 phylogenetic/defaults/auspice_config.json        | 6 +++++-
 phylogenetic/defaults/auspice_config_global.json | 8 ++++++--
 2 files changed, 11 insertions(+), 3 deletions(-)

diff --git a/phylogenetic/defaults/auspice_config.json b/phylogenetic/defaults/auspice_config.json
index 7c19843..729534b 100644
--- a/phylogenetic/defaults/auspice_config.json
+++ b/phylogenetic/defaults/auspice_config.json
@@ -10,7 +10,9 @@
     {"key": "lineage", "title": "Strain", "type": "categorical"},
     {"key": "clade_membership", "title": "Clade", "type": "categorical"},
     {"key": "author", "title": "Authors", "type": "categorical"},
-    {"key": "host", "title": "Host Species", "type": "categorical"}
+    {"key": "host", "title": "Host Species", "type": "categorical"},
+    {"key": "host_genus", "title": "Host Genus", "type": "categorical"},
+    {"key": "host_type", "title": "Host Type", "type": "categorical"}
   ],
   "geo_resolutions": [
     "state",
@@ -29,6 +31,8 @@
     "author",
     "clade_membership",
     "host",
+    "host_genus",
+    "host_type",
     "lineage"
   ],
   "display_defaults": {
diff --git a/phylogenetic/defaults/auspice_config_global.json b/phylogenetic/defaults/auspice_config_global.json
index ca0eb10..28a75ae 100644
--- a/phylogenetic/defaults/auspice_config_global.json
+++ b/phylogenetic/defaults/auspice_config_global.json
@@ -6,7 +6,9 @@
     {"key": "region", "title": "Region", "type": "categorical"},
     {"key": "country", "title": "Country", "type": "categorical"},
     {"key": "author", "title": "Authors", "type": "categorical"},
-    {"key": "host", "title": "Host Species", "type": "categorical"}
+    {"key": "host", "title": "Host Species", "type": "categorical"},
+    {"key": "host_genus", "title": "Host Genus", "type": "categorical"},
+    {"key": "host_type", "title": "Host Type", "type": "categorical"}
   ],
   "geo_resolutions": [
     "region",
@@ -21,7 +23,9 @@
     "region",
     "country",
     "author",
-    "host"
+    "host",
+    "host_genus",
+    "host_type"
   ],
   "display_defaults": {
     "color_by": "region",