From 14638211c7865c5125b070a95f140c238580cecd Mon Sep 17 00:00:00 2001
From: Jennifer Chang <jennifer.chang.bioinform@gmail.com>
Date: Wed, 13 Nov 2024 14:03:30 -0800
Subject: [PATCH] Phylogenetic: add host genus and type coloring to trees

---
 phylogenetic/defaults/auspice_config.json        | 6 +++++-
 phylogenetic/defaults/auspice_config_global.json | 8 ++++++--
 2 files changed, 11 insertions(+), 3 deletions(-)

diff --git a/phylogenetic/defaults/auspice_config.json b/phylogenetic/defaults/auspice_config.json
index 44da9c1..a352ec5 100644
--- a/phylogenetic/defaults/auspice_config.json
+++ b/phylogenetic/defaults/auspice_config.json
@@ -10,7 +10,9 @@
     {"key": "lineage", "title": "Pathoplexus lineage", "type": "categorical"},
     {"key": "clade_membership", "title": "Clade", "type": "categorical"},
     {"key": "author", "title": "Authors", "type": "categorical"},
-    {"key": "host", "title": "Host Species", "type": "categorical"}
+    {"key": "host", "title": "Host Species", "type": "categorical"},
+    {"key": "host_genus", "title": "Host Genus", "type": "categorical"},
+    {"key": "host_type", "title": "Host Type", "type": "categorical"}
   ],
   "geo_resolutions": [
     "state",
@@ -29,6 +31,8 @@
     "author",
     "clade_membership",
     "host",
+    "host_genus",
+    "host_type",
     "lineage"
   ],
   "display_defaults": {
diff --git a/phylogenetic/defaults/auspice_config_global.json b/phylogenetic/defaults/auspice_config_global.json
index 37ce140..26ab194 100644
--- a/phylogenetic/defaults/auspice_config_global.json
+++ b/phylogenetic/defaults/auspice_config_global.json
@@ -8,7 +8,9 @@
     {"key": "lineage", "title": "Pathoplexus lineage", "type": "categorical"},
     {"key": "clade_membership", "title": "Clade", "type": "categorical"},
     {"key": "author", "title": "Authors", "type": "categorical"},
-    {"key": "host", "title": "Host Species", "type": "categorical"}
+    {"key": "host", "title": "Host Species", "type": "categorical"},
+    {"key": "host_genus", "title": "Host Genus", "type": "categorical"},
+    {"key": "host_type", "title": "Host Type", "type": "categorical"}
   ],
   "geo_resolutions": [
     "region",
@@ -23,7 +25,9 @@
     "region",
     "country",
     "author",
-    "host"
+    "host",
+    "host_genus",
+    "host_type"
   ],
   "display_defaults": {
     "color_by": "region",