Merge branch 'STABLE-25.04.x' into backport-fix-jgit-vuln [e2e prod]

Author: pditommaso

plugins/nf-amazon/build.gradle

@@ -55,9 +55,10 @@ dependencies {
     }
 
     // address security vulnerabilities
-    runtimeOnly 'io.netty:netty-common:4.1.118.Final'
-    runtimeOnly 'io.netty:netty-handler:4.1.118.Final'
-        
+    runtimeOnly 'io.netty:netty-common:4.1.124.Final'
+    runtimeOnly 'io.netty:netty-handler:4.1.124.Final'
+    runtimeOnly 'io.netty:netty-codec-http2:4.1.124.Final'
+    
     testImplementation(testFixtures(project(":nextflow")))
     testImplementation project(':nextflow')
     testImplementation "org.apache.groovy:groovy:4.0.26"

plugins/nf-azure/build.gradle

@@ -48,7 +48,8 @@ dependencies {
     }
 
     // address security vulnerabilities
-    runtimeOnly 'io.netty:netty-handler:4.1.118.Final'
+    runtimeOnly 'io.netty:netty-handler:4.1.124.Final'
+    runtimeOnly 'io.netty:netty-codec-http2:4.1.124.Final'
     runtimeOnly 'net.minidev:json-smart:2.5.2'
 
     testImplementation(testFixtures(project(":nextflow")))

plugins/nf-tower/src/main/io/seqera/tower/plugin/TowerFusionToken.groovy

@@ -107,7 +107,7 @@ class TowerFusionToken implements FusionToken {
         if( !endpoint )
             throw new IllegalArgumentException("Missing Seqera Platform endpoint")
         if( !accessToken )
-            throw new IllegalArgumentException("Missing Seqera Platform access token")
+            throw new IllegalArgumentException("Seqera Platform access token is required to use Fusion -- see https://docs.seqera.io/fusion/licensing for more information")
     }
 
     /**

validation/google.sh

@@ -77,14 +77,4 @@ $NXF_CMD -C ./google.config \
     run nextflow-io/hello \
     -process.array 10
 
-## Legacy GLS tests
-
-## run test-subdirs inputs/outputs
-$NXF_CMD -C ./gls.config -q run ./test-subdirs.nf
-
-## run publishDir overwrite
-$NXF_CMD -C ./gls.config run ./test-overwrite.nf
-
-## re-executing should overwrite the published file
-[ `$NXF_CMD -C ./gls.config run ./test-overwrite.nf -resume | { grep 'Failed to publish file' -c || true; }` == 0 ] && echo OK || { echo 'Failed to publish file' && false; }