Value Error: <my.gvcf.gz> is not a directory.

[CNHAustin]

Hello, having an issue where snvstory keeps parsing my input gvcf as a directory.

directory structure:
dev/
    |
    data/
        |
        resource_dir/
        output/
        NIST8398-20240828.hard-filtered.gvcf.gz

command:

docker-compose run ancestry --path "data/NIST8398-20240828.hard-filtered.gvcf.gz" --resource "data/resource_dir" --output-dir "/data/NIST_output" --genome-ver 38 --mode WGS`

Error:

Directory: data/NIST8398-20240828.hard-filtered.gvcf.gz does not appear to be local or an s3 input
Traceback (most recent call last):
  File "/opt/Ancestry/igm_churchill_ancestry/cli.py", line 125, in run_ancestry
    local_vcf_dir = flex_input(args.path, INPUT_DIR, directory=True)
  File "/opt/Ancestry/igm_churchill_ancestry/utilities/flex.py", line 58, in flex_input
    raise ValueError(f"{in_path} is not a directory.")
ValueError: data/NIST8398-20240828.hard-filtered.gvcf.gz is not a directory.

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/opt/conda/lib/python3.7/runpy.py", line 193, in _run_module_as_main
    "__main__", mod_spec)
  File "/opt/conda/lib/python3.7/runpy.py", line 85, in _run_code
    exec(code, run_globals)
  File "/opt/Ancestry/igm_churchill_ancestry/__main__.py", line 4, in <module>
    run_ancestry()
  File "/opt/Ancestry/igm_churchill_ancestry/cli.py", line 131, in run_ancestry
    raise RuntimeError
RuntimeError

I've looked through the the functions mentioned and I can't figure out why it's treating my gvcf.gz file as a directory. Could be a pathing issue?

The gvcf is also HUGE (23.5 GB), that could be causing an issue?

Best,
Austin