NAMESPACE

# Generated by roxygen2: do not edit by hand

export(DESeq4MAE)
export(add_gnomAD_AF)
export(plotAllelicCounts)
export(plotMA4MAE)
import(data.table)
importFrom(BiocGenerics,estimateSizeFactors)
importFrom(BiocGenerics,plotDispEsts)
importFrom(BiocGenerics,pos)
importFrom(BiocGenerics,score)
importFrom(BiocGenerics,start)
importFrom(DESeq2,"counts<-")
importFrom(DESeq2,"dispersions<-")
importFrom(DESeq2,"normalizationFactors<-")
importFrom(DESeq2,"sizeFactors<-")
importFrom(DESeq2,DESeqDataSet)
importFrom(DESeq2,DESeqDataSetFromMatrix)
importFrom(DESeq2,counts)
importFrom(DESeq2,dispersions)
importFrom(DESeq2,estimateSizeFactorsForMatrix)
importFrom(DESeq2,fpkm)
importFrom(DESeq2,fpm)
importFrom(DESeq2,makeExampleDESeqDataSet)
importFrom(DESeq2,nbinomWaldTest)
importFrom(DESeq2,normalizationFactors)
importFrom(DESeq2,replaceOutliers)
importFrom(DESeq2,results)
importFrom(DESeq2,show)
importFrom(DESeq2,sizeFactors)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicScores,populations)
importFrom(GenomicScores,seqnames)
importFrom(IRanges,IRanges)
importFrom(S4Vectors,DataFrame)
importFrom(dplyr,left_join)
importFrom(ggplot2,aes)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,geom_abline)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_x_log10)
importFrom(ggplot2,scale_y_log10)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(magrittr,"%>%")