DESCRIPTION

Package: tMAE
Title: Tests and visualizes for Mono-allelic expressed variants
Version: 1.0.1
Authors@R: c(
    person(given = "Vicente",
           family = "Yepez",
           role = c("aut", "cre"),
           email = "yepez@in.tum.de"),
    person(given = "Christian",
           family = "Mertes",
           role = c("aut"),
           email = "mertes@in.tum.de"),
    person(given = "Michaela",
           family = "Müller",
           role = c("aut"),
           email = "mumichae@in.tum.de"))
Description: Given allele-specific counts generated by GATK, tests for 
    mono-allelic expression using DESeq. It also adds allele frequency from
    gnomAD and provides plotting functions for visualization.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
Imports: 
  dplyr,
  magrittr,
  GenomicRanges,
  ggplot2,
  DESeq2,
  BiocGenerics,
  GenomicScores,
  S4Vectors,
  IRanges
Depends: 
  data.table
Suggests:
    MafDb.gnomAD.r2.1.hs37d5,
    MafDb.gnomAD.r2.1.GRCh38,
    BiocManager,
    testthat