fix: NA values in high dose hook detection

[Fersoil]

Checklist

• I added a very descriptive title to this issue.
• I used the GitHub search to find a similar question and didn't find it.
• I am sure that this is a bug in PvSTATEM package rather than my code.
• The bug is not resolved by updating to the latest stable version of PvSTATEM package.
• I included a link to the documentation page I am referring to (if applicable).

Reproduction steps

getwd()


require(devtools)
install_github("mini-pw/PvSTATEM", force=TRUE)

require(PvSTATEM) # load the installed package

#library(PvSTATEM)

# test --------------------------------------------------------------------

#setwd("X:/PhD/Arboviruses/xstar/raw_data_iflex")

plate_filepath <-"PlateRunResults_PLATE_12312024_RUN000_Iga_P3.csv"
layout_filepath <- "layout_philippines_P3.xlsx"

plate <- read_luminex_data(plate_filepath, layout_filepath) # read the data


plate

tmp_dir <- "X:/PhD/Arboviruses/xstar/RAU_xstar/RAU_IgA_IgM/" #changer en fonction du dossier où l'on veut les résultats
test_output_path <- file.path(tmp_dir, "output_IgA_philippines3.csv")

process_plate(plate = plate, filename ="output_IgA_philippines3.csv", output_dir = "/RAU_IgA_IgM/" )



packageVersion("PvSTATEM")

Error Message and Stack Trace (if applicable)

Błąd w poleceniu 'is.decreasing(mfi[high_dose_hook_samples])':
NA values detected in the input vector for is.decreasing function.

OS

Windows