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Question regarding how to extract protein representation from your pretrain model #6

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Tizzzzy opened this issue Sep 14, 2024 · 0 comments

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@Tizzzzy
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Tizzzzy commented Sep 14, 2024

Hi author,
Huge fan of your work. I am currently trying to apply your code to a downstream task. Specifically, I am working with a protein PDB file and aim to extract the latent representation of the protein using your pretrained model. I was wondering if this is possible.
If it is, could you kindly show me which script I should run and which line of code store the representation of the protein?
Thank you so much for your time

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