v7.1.2

What's Changed

• Issue 565 un-comment by @turbomam in #567

Full Changelog: v7.1.1...v7.1.2

v7.1.1

What's Changed

• Database attribs -> slots, still unquoted fwd refs by @turbomam in #558
• minimal tool.poetry.dependencies by @turbomam in #561
• commented out biosample/site modeling by @turbomam in #564
• add pytest to PR test action by @turbomam in #562
• Uncomment biosample/site modeling by @turbomam in #566

Full Changelog: v7.1.0...v7.1.1

v7.1.0

What's Changed

• Add id patterns for Study and Biosample classes by @pkalita-lbl in #478
• finish alignment of gold_sample_identifiers with NMDC Biosample, not Study by @turbomam in #472
• fast integrated dump of studies/biosamples by @turbomam in #471
• created biosample category slot; enum and permissible values; positive test by @turbomam in #466
• add omics_processing to dump; don't drop credit associations from studies by @turbomam in #479
• NMDC minted ID documentation by @sujaypatil96 in #477
• reformatting minted id usage section in identifier doc by @sujaypatil96 in #482
• reformat identifiers doc for mkdocs by @sujaypatil96 in #483
• Remove id structured_patterns by @pkalita-lbl in #485
• added Metagenome Raw Reads pv by @turbomam in #488
• Add slot inheritance information to class pages by @sujaypatil96 in #475
• Issue330 update identifiers by @mslarae13 in #491
• Update schema's version value from '4.0.0' to '7.0.0' by @turbomam in #497
• typed identifier with version number documentation by @sujaypatil96 in #512
• Update actions versions by @pkalita-lbl in #513
• schema and test data changes for v7 migration by @turbomam in #529
• deprecate NMDC jinja in favour of linkml upstream base docgen jinja by @sujaypatil96 in #504
• switched from jsonschema CLI to check-jsonschema by @turbomam in #540
• migration script with minimal flotsam by @turbomam in #542
• dest db details in local.env by @turbomam in #546
• biosample relations, OBI perspective by @turbomam in #535
• composite regex patterns for id structured patterns by @sujaypatil96 in #531
• strawperson global id pattern by @turbomam in #499
• nmdc_data.py pkgutil invocations by @turbomam in #551

New Contributors

• @pkalita-lbl made their first contribution in #478

Full Changelog: v7.0.0...v7.1.0

v7.0.0

What's Changed

• bytes slot rage: xsd:int to xsd:long by @dwinston in #296
• removing paths for triggering doc deploy by @sujaypatil96 in #433
• TEST GH-PAGES WF: remove trivial comments by @sujaypatil96 in #434
• TEST GH PAGES WF: delete newline by @sujaypatil96 in #435
• add --force option to make gh-deploy target by @sujaypatil96 in #436
• TEST GH PAGES WF: remove another newline by @sujaypatil96 in #437
• Issue 443 sample prep mod by @turbomam in #445
• Corrected a typo in database class description. by @mslarae13 in #448
• Eliminated warnings and concerning "INFO"s when loading schema by @turbomam in #447
• passing sample prep test written by @turbomam in #452
• update poetry lock file and modify jinja template by @sujaypatil96 in #449
• show middle layer elements in inheritance tree in mermaid by @sujaypatil96 in #441
• Class and slot names normalized according to LinkML linter by @turbomam in #457

Full Changelog: v6.0.4...v7.0.0

v6.0.4

What's Changed

• merge current main back into new_file_enums by @turbomam in #360
• add default_prefix to schemas that do not have it specified by @sujaypatil96 in #361
• made placeholder expansions for prefixes by @turbomam in #392
• most lc mixs prefix defs gone by @turbomam in #393
• many prefix/ns solutions & define slots outside of usage by @turbomam in #394
• added description for MAGs analysis activity by @turbomam in #395
• update EMSL_store_temp by @mslarae13 in #398
• updates for read QC analysis activity by @emileyfadrosh in #399
• add jinja templates for NDMC Schema documentation by @sujaypatil96 in #358
• pull latest versions of linkml deps by @sujaypatil96 in #404
• add linkml source section to slot pages by @sujaypatil96 in #406
• use gen-doc in Makefile target and Action by @sujaypatil96 in #408
• GOLD_analysis_project_identifiers as slot on schema classes by @sujaypatil96 in #413
• Added definition of metagenome annotation activity by @hubin-keio in #414
• for readme by @turbomam in #416
• use previously added nmdc logo image in README.md by @turbomam in #417
• schema maintenance and cleanup by @sujaypatil96 in #418
• Update workflow_execution_activity.yaml by @hubin-keio in #405
• WIP: Add new file types to enum by @scanon in #349
• added submitter role and EFO prefix by @turbomam in #424
• jd schema diff 3.2.0 v 4.0.0 by @turbomam in #427
• Added description of metagenome assembly by @hubin-keio in #415
• typo by @turbomam in #430

New Contributors

• @mslarae13 made their first contribution in #398
• @emileyfadrosh made their first contribution in #399
• @hubin-keio made their first contribution in #414
• @scanon made their first contribution in #349

Full Changelog: v6.0.3...v6.0.4

v5.0.5

What's Changed

• set range of processing_institution range to processing_institution_enum and updated tests

Full Changelog: v5.0.4...v5.0.5

v5.0.4

What's Changed

• processing institution code and data by @turbomam in #363

Full Changelog: v5.0.3...v5.0.4

v5.0.3

What's Changed

• step that copies included files from src directory into nmdc_schema by @sujaypatil96 in #356

Full Changelog: v5.0.2...v5.0.3

v5.0.1

What's Changed

• initial bioscales commit by @turbomam in #320
• biosample slots from portal by @turbomam in #319
• remove source annotations from bioscales terms by @turbomam in #342
• has credit association inlined as list by @turbomam in #346

Full Changelog: v4.0.0...v5.0.1

v4.0.0

What's Changed

• Add gen-linkml target to Makefile by @sujaypatil96 in #282
• do not merge: testing linkml v1.2.0rc6 by @sujaypatil96 in #281
• Update README.md by @wdduncan in #295
• add try except block around call to remove() by @sujaypatil96 in #303
• Issue 288 non subclass hints by @turbomam in #290
• added display_hint annotations by @turbomam in #268
• Display hints, including person value subclasses from Issue 286 by @turbomam in #287
• #306 confirmed GH actions use poetry by @turbomam in #307
• Integrate MIxS 6 submodule with nmdc-schema, make new import by @turbomam in #292

Full Changelog: v3.2.0...v4.0.0