Issue with uploading a created .genome file to use as default genome. #4
Description
Unfortunately, the new zebrafish genome (GRCz11/danRer11) is not available on IGV2.4.8; I had to create a new genome file using the fastq file for danRer11. However, when I try to run my danRer11.genome using autoIGV1.5, the run is unsuccessful. At first, it would not register the genome. Then, I tried putting my danRer11.genome file into the same folder as hg19 (where IGV stores downloaded genomes), but the application simply said the run was complete without providing any pictures. I believe that the created .genome files do not contain the full information for the genome. Is there a way I can get around this with autoIGV? See three screenshots for further information.
Before downloading to IGVs dowloaded genome folder:
After downloading to IGVs downloaded genome folder:
Comparison of file sizes for created vs downloaded genome file:
