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BGC Taxonomy table empty #89

@intikhab

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@intikhab

Hi Developers of BigSlice,

I completed a large run of bigslice with antismash and taxonomic information provided as suggested by the example. In the results I see that taxonomy is not shown and in addition GCF table also does not load.

One mistake here is that "/" was not included in the folder column where we defined the taxonomy, However rest of taxonomy is provided with tab separated values (no taxon id included as in the example dataset of bigslice).

The sqlite3 db file also shows that bgc_taxonomy table is empty, however GCF tables in the db show data:

sqlite> select * from bgc_class limit 2;
1|181
2|241
sqlite> select * from bgc_taxonomy limit 2;
sqlite> select * from taxon limit 2;
19790|3|0-14-0-10-38-17
19791|4|0-14-0-10-38-17
sqlite> select * from taxon_class limit 2;
1|0|Kingdom
2|1|Phylum

Is it possible to update the bgc_taxonomy table from the taxonomy.tsv or should we rerun big-slice provide the taxonomy file as before but including "/" for the folder column?

Many Thanks,
Intikhab

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