From f524da0dc102447c368172222236859d112a3466 Mon Sep 17 00:00:00 2001 From: Diller Date: Wed, 6 Apr 2022 14:07:41 -0400 Subject: [PATCH] Creating Release 2022-04-06. --- omrse-base.json | 790 ++++++++++++++++++++------- omrse-base.obo | 205 +++++-- omrse-base.owl | 677 +++++++++++++++++------- omrse-full.json | 1210 ++++++++++++++++++++++++++++++++---------- omrse-full.obo | 312 +++++++++-- omrse-full.owl | 1350 ++++++++++++++++++++++++++++++++++------------- omrse.json | 1210 ++++++++++++++++++++++++++++++++---------- omrse.obo | 312 +++++++++-- omrse.owl | 1350 ++++++++++++++++++++++++++++++++++------------- 9 files changed, 5573 insertions(+), 1843 deletions(-) diff --git a/omrse-base.json b/omrse-base.json index da7ca4b..95598e7 100644 --- a/omrse-base.json +++ b/omrse-base.json @@ -9,6 +9,11 @@ "pred": "http://purl.obolibrary.org/obo/RO_0000052", "sub": "http://purl.obolibrary.org/obo/OMRSE_00000048" }, + { + "obj": "http://purl.obolibrary.org/obo/BFO_0000040", + "pred": "http://purl.obolibrary.org/obo/RO_0000052", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002072" + }, { "obj": "http://purl.obolibrary.org/obo/NCBITaxon_9606", "pred": "http://purl.obolibrary.org/obo/RO_0000052", @@ -37,6 +42,9 @@ ], "predicateId": "http://purl.obolibrary.org/obo/RO_0002351" }, + { + "predicateId": "http://purl.obolibrary.org/obo/BFO_0000054" + }, { "predicateId": "http://purl.obolibrary.org/obo/OMRSE_00000070", "rangeClassIds": [ @@ -59,22 +67,37 @@ { "obj": "http://purl.obolibrary.org/obo/BFO_0000015", "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000192" + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002062" + }, + { + "obj": "http://purl.obolibrary.org/obo/BFO_0000015", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002064" + }, + { + "obj": "http://purl.obolibrary.org/obo/BFO_0000015", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002068" }, { "obj": "http://purl.obolibrary.org/obo/BFO_0000016", "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000193" + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002058" }, { "obj": "http://purl.obolibrary.org/obo/BFO_0000016", "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000194" + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002066" }, { "obj": "http://purl.obolibrary.org/obo/BFO_0000016", "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00002058" + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002069" + }, + { + "obj": "http://purl.obolibrary.org/obo/BFO_0000020", + "pred": "http://purl.obolibrary.org/obo/RO_0000057", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002064" }, { "obj": "http://purl.obolibrary.org/obo/BFO_0000023", @@ -84,17 +107,17 @@ { "obj": "http://purl.obolibrary.org/obo/BFO_0000023", "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000024" + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000039" }, { "obj": "http://purl.obolibrary.org/obo/BFO_0000023", "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000039" + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000040" }, { "obj": "http://purl.obolibrary.org/obo/BFO_0000023", "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000040" + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002072" }, { "obj": "http://purl.obolibrary.org/obo/BFO_0000027", @@ -201,15 +224,35 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/OMRSE_00000097" }, + { + "obj": "http://purl.obolibrary.org/obo/BFO_0000040", + "pred": "http://purl.obolibrary.org/obo/IAO_0000136", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002071" + }, { "obj": "http://purl.obolibrary.org/obo/BFO_0000040", "pred": "http://purl.obolibrary.org/obo/RO_0000052", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000193" + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002066" + }, + { + "obj": "http://purl.obolibrary.org/obo/BFO_0000040", + "pred": "http://purl.obolibrary.org/obo/RO_0000052", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002072" }, { "obj": "http://purl.obolibrary.org/obo/BFO_0000040", "pred": "http://purl.obolibrary.org/obo/RO_0000057", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000192" + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002062" + }, + { + "obj": "http://purl.obolibrary.org/obo/BFO_0000040", + "pred": "http://purl.obolibrary.org/obo/RO_0000057", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002064" + }, + { + "obj": "http://purl.obolibrary.org/obo/BFO_0000040", + "pred": "http://purl.obolibrary.org/obo/RO_0000057", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002068" }, { "obj": "http://purl.obolibrary.org/obo/BFO_0000040", @@ -262,9 +305,9 @@ "sub": "http://purl.obolibrary.org/obo/OMRSE_00000506" }, { - "obj": "http://purl.obolibrary.org/obo/IAO_0000030", - "pred": "http://purl.obolibrary.org/obo/RO_0000057", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000192" + "obj": "http://purl.obolibrary.org/obo/IAO_0000027", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002061" }, { "obj": "http://purl.obolibrary.org/obo/IAO_0000030", @@ -289,22 +332,22 @@ { "obj": "http://purl.obolibrary.org/obo/IAO_0000030", "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000197" + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000203" }, { "obj": "http://purl.obolibrary.org/obo/IAO_0000030", "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000203" + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000204" }, { "obj": "http://purl.obolibrary.org/obo/IAO_0000030", "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000204" + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000221" }, { "obj": "http://purl.obolibrary.org/obo/IAO_0000030", "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000221" + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002071" }, { "obj": "http://purl.obolibrary.org/obo/IAO_0000100", @@ -531,6 +574,11 @@ "pred": "http://purl.obolibrary.org/obo/BFO_0000054", "sub": "http://purl.obolibrary.org/obo/OMRSE_00000015" }, + { + "obj": "http://purl.obolibrary.org/obo/OGMS_0000097", + "pred": "http://purl.obolibrary.org/obo/RO_0002087", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000161" + }, { "obj": "http://purl.obolibrary.org/obo/OGMS_0000097", "pred": "is_a", @@ -731,51 +779,6 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/PCO_0000020" }, - { - "obj": "http://purl.obolibrary.org/obo/OMRSE_00000024", - "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000002" - }, - { - "obj": "http://purl.obolibrary.org/obo/OMRSE_00000024", - "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000010" - }, - { - "obj": "http://purl.obolibrary.org/obo/OMRSE_00000024", - "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000025" - }, - { - "obj": "http://purl.obolibrary.org/obo/OMRSE_00000024", - "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000026" - }, - { - "obj": "http://purl.obolibrary.org/obo/OMRSE_00000024", - "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000038" - }, - { - "obj": "http://purl.obolibrary.org/obo/OMRSE_00000024", - "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000077" - }, - { - "obj": "http://purl.obolibrary.org/obo/OMRSE_00000024", - "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000087" - }, - { - "obj": "http://purl.obolibrary.org/obo/OMRSE_00000024", - "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000092" - }, - { - "obj": "http://purl.obolibrary.org/obo/OMRSE_00000024", - "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000095" - }, { "obj": "http://purl.obolibrary.org/obo/OMRSE_00000025", "pred": "is_a", @@ -1306,41 +1309,11 @@ "pred": "http://purl.obolibrary.org/obo/RO_0002350", "sub": "http://purl.obolibrary.org/obo/OMRSE_00000190" }, - { - "obj": "http://purl.obolibrary.org/obo/OMRSE_00000192", - "pred": "http://purl.obolibrary.org/obo/BFO_0000054", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000193" - }, - { - "obj": "http://purl.obolibrary.org/obo/OMRSE_00000192", - "pred": "http://purl.obolibrary.org/obo/BFO_0000054", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000194" - }, { "obj": "http://purl.obolibrary.org/obo/OMRSE_00000192", "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/OMRSE_00000196" }, - { - "obj": "http://purl.obolibrary.org/obo/OMRSE_00000192", - "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000198" - }, - { - "obj": "http://purl.obolibrary.org/obo/OMRSE_00000193", - "pred": "http://purl.obolibrary.org/obo/IAO_0000136", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000197" - }, - { - "obj": "http://purl.obolibrary.org/obo/OMRSE_00000194", - "pred": "http://purl.obolibrary.org/obo/IAO_0000136", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000197" - }, - { - "obj": "http://purl.obolibrary.org/obo/OMRSE_00000194", - "pred": "http://purl.obolibrary.org/obo/RO_0000053", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000195" - }, { "obj": "http://purl.obolibrary.org/obo/OMRSE_00000198", "pred": "is_a", @@ -1591,11 +1564,91 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/OMRSE_00002057" }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00002062", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002063" + }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00002064", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002065" + }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00002068", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000198" + }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00002068", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002070" + }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00002069", + "pred": "http://purl.obolibrary.org/obo/IAO_0000136", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002071" + }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00002069", + "pred": "http://purl.obolibrary.org/obo/RO_0000053", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000195" + }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00002072", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000002" + }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00002072", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000010" + }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00002072", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000025" + }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00002072", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000026" + }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00002072", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000038" + }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00002072", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000077" + }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00002072", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000087" + }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00002072", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000092" + }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00002072", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000095" + }, { "obj": "http://www.geneontology.org/formats/oboInOwl#ObsoleteClass", "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/OMRSE_00000018" }, + { + "obj": "http://www.geneontology.org/formats/oboInOwl#ObsoleteClass", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000024" + }, { "obj": "http://www.geneontology.org/formats/oboInOwl#ObsoleteClass", "pred": "is_a", @@ -1681,6 +1734,26 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/OMRSE_00000168" }, + { + "obj": "http://www.geneontology.org/formats/oboInOwl#ObsoleteClass", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000192" + }, + { + "obj": "http://www.geneontology.org/formats/oboInOwl#ObsoleteClass", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000193" + }, + { + "obj": "http://www.geneontology.org/formats/oboInOwl#ObsoleteClass", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000194" + }, + { + "obj": "http://www.geneontology.org/formats/oboInOwl#ObsoleteClass", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000197" + }, { "obj": "http://www.geneontology.org/formats/oboInOwl#ObsoleteProperty", "pred": "subPropertyOf", @@ -2049,11 +2122,11 @@ }, { "pred": "http://www.w3.org/2002/07/owl#versionInfo", - "val": "2021-08-30" + "val": "2022-04-06" } ], "subsets": [], - "version": "http://purl.obolibrary.org/obo/omrse/releases/2021-08-30/omrse-base.json", + "version": "http://purl.obolibrary.org/obo/omrse/releases/2022-04-06/omrse-base.json", "xrefs": [] }, "nodes": [ @@ -2423,7 +2496,7 @@ }, { "id": "http://purl.obolibrary.org/obo/OMRSE_00000024", - "lbl": "role in human social processes", + "lbl": "obsolete role in human social processes", "meta": { "basicPropertyValues": [ { @@ -2437,7 +2510,8 @@ "definition": { "val": "A role inhering in an entity realized by social interactions in human society.", "xrefs": [] - } + }, + "deprecated": true }, "type": "CLASS" }, @@ -2983,7 +3057,7 @@ } ], "definition": { - "val": "A healthcare provider role that inheres in an organization and is realized by providing inpatient and outpatient care.", + "val": "A healthcare provider role that inheres in an organization and is realized by providing inpatient care.", "xrefs": [] } }, @@ -4359,6 +4433,23 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/OMRSE_00000161", + "lbl": "leaving a health care facility after receiving care", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "William R. Hogan" + } + ], + "definition": { + "val": "A process (1) where the active participant, who at the beginning of the process is located in a healthcare facility, exits the facility and no longer stands in a \"located in\" relationship to the facility and (2) is immediately preceded by a healthcare encounter in which the active participant also participated.", + "xrefs": [] + } + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/OMRSE_00000162", "lbl": "obsolete medical advice", @@ -4620,7 +4711,7 @@ }, { "id": "http://purl.obolibrary.org/obo/OMRSE_00000192", - "lbl": "communication", + "lbl": "obsolete communication", "meta": { "basicPropertyValues": [ { @@ -4646,13 +4737,14 @@ "definition": { "val": "A process in which some participant shares some information content entity about some state of that participant with some other participant.", "xrefs": [] - } + }, + "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/OMRSE_00000193", - "lbl": "linguistic competence", + "lbl": "obsolete linguistic competence", "meta": { "basicPropertyValues": [ { @@ -4675,13 +4767,14 @@ "definition": { "val": "A disposition inhering in a material entity that, if realized, is realized by that material entity’s communicating via some linguistic concretization.", "xrefs": [] - } + }, + "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/OMRSE_00000194", - "lbl": "language", + "lbl": "obsolete language", "meta": { "basicPropertyValues": [ { @@ -4704,7 +4797,8 @@ "definition": { "val": "A disposition inhering in a linguistic community that (i) is a maximal aggregate of communicatively compatible linguistic competences, and (ii) if realized, is realized by any and all realizations of those linguistic competences.", "xrefs": [] - } + }, + "deprecated": true }, "type": "CLASS" }, @@ -4739,7 +4833,7 @@ }, { "id": "http://purl.obolibrary.org/obo/OMRSE_00000196", - "lbl": "expression of preferred language", + "lbl": "obsolete expression of preferred language", "meta": { "basicPropertyValues": [ { @@ -4762,13 +4856,14 @@ "definition": { "val": "A communication in which some participant states a preference for some communicative process to be in a certain language, and that has a concretization of a preferred language information content entity as its specified output.", "xrefs": [] - } + }, + "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/OMRSE_00000197", - "lbl": "preferred language information content entity", + "lbl": "obsolete preferred language information content entity", "meta": { "basicPropertyValues": [ { @@ -4791,7 +4886,8 @@ "definition": { "val": "An information content entity that (i) is about some person, some language, and some linguistic competence; and (ii) conveys the language with which that person prefers to communicate within some given context.", "xrefs": [] - } + }, + "deprecated": true }, "type": "CLASS" }, @@ -6243,7 +6339,7 @@ "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000111", - "val": "completing a program of eduction" + "val": "completing a program of education" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000117", @@ -6622,33 +6718,90 @@ "This data item in a typical attribute-value system such as table, XML, JSON takes values like \"secondary education\", \"Associate Degree\", \"Bachelor Degree\", \"High School\", and so on." ], "definition": { - "val": "A socio-economic data item that is about a person and their completion of an education program (and its type), where that education progam is the last one in a sequence (of education programs) that the person has completed, where each education program completed except the last one is a pre-requisite to the education program completed after it.", + "val": "A socio-economic data item that is about a person and their completion of an education program (and its type), where that education program is the last one in a sequence (of education programs) that the person has completed, where each education program completed except the last one is a pre-requisite to the education program completed after it.", "xrefs": [] } }, "type": "CLASS" }, { - "id": "http://purl.obolibrary.org/obo/OMRSE_00002048", - "lbl": "undergraduate higher education program", + "id": "http://purl.obolibrary.org/obo/OMRSE_00002046", + "lbl": "vocational education program", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000111", - "val": "undergraduate higher education plan specification" + "val": "vocational education plan specification" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000117", "val": "William R. Hogan" }, { - "pred": "http://purl.obolibrary.org/obo/IAO_0000118", - "val": "undergraduate education program" - }, - { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0002-9881-1017" - }, + "pred": "http://purl.obolibrary.org/obo/IAO_0000119", + "val": "http://uis.unesco.org/sites/default/files/documents/international-standard-classification-of-education-isced-2011-en.pdf" + } + ], + "comments": [ + "Vocational education programs are designed for learners to acquire the knowledge, skills and competencies specific to a particular occupation, trade, or class of occupations or trades. Such programs may have work-based components (e.g. apprenticeships, dual-system education programmes). Successful completion of such programs leads to labor market-relevant, vocational qualifications acknowledged as occupationally-oriented by the relevant national authorities and/or the labor market." + ], + "definition": { + "val": "An educational plan specification that has a vocational objective specification as part.", + "xrefs": [] + } + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/OMRSE_00002047", + "lbl": "kindergarten education program", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000111", + "val": "kindergarten education plan specification" + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "William R. Hogan" + }, + { + "pred": "http://purl.org/dc/elements/1.1/creator", + "val": "http://orcid.org/0000-0002-9881-1017" + }, + { + "pred": "http://purl.org/dc/elements/1.1/date", + "val": "2020-09-02T12:38:43Z" + } + ], + "definition": { + "val": "A primary education plan specification that specifies the competencies and information content entities that should be acquired by students in the first year of primary education in the United States.", + "xrefs": [] + } + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/OMRSE_00002048", + "lbl": "undergraduate higher education program", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000111", + "val": "undergraduate higher education plan specification" + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "William R. Hogan" + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000118", + "val": "undergraduate education program" + }, + { + "pred": "http://purl.org/dc/elements/1.1/creator", + "val": "http://orcid.org/0000-0002-9881-1017" + }, { "pred": "http://purl.org/dc/elements/1.1/date", "val": "2020-09-02T12:52:46Z" @@ -7057,6 +7210,342 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/OMRSE_00002061", + "lbl": "monetary personal income data item", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000112", + "val": "Examples of monetary forms of payment include: wages, salary, or tips; interest generated by capital; dividends earned; lottery, game, or contest monetary winnings; alimony; royalties; trusts; pensions; receipt of rental payments; unemployment payments; social security payments; worker's compensation; social security payments; or profit from entrepreneurial activities." + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "Matthew Diller" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Chris Stoeckert" + } + ], + "comments": [ + "We use the phrase ‘some person’ in the definition because this class can be about an individual's or a household's earnings. Similarly, we use 'personal income' in the label because the term is typically restricted to individuals and households. This class is also restricted to being about monetary forms of income." + ], + "definition": { + "val": "A data item that is about the sum of earnings for some person(s) from various forms of payment or profits.", + "xrefs": [] + } + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/OMRSE_00002062", + "lbl": "concretization-utilization process", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000112", + "val": "Taking notes on a meeting is an example in which the concretization relation is newly established, since the SDCs that concretize the GDCs come into existence as the notes are written. In contrast, using slides prepared by someone else in order to convey information during a presentation is a case of using a concretization in which the performer neither brings the concretizing SDCs into existence nor is responsible for their standing in the concretization relation to the relevant GDCs. A nonlinguistic example is drawing the logo of one’s favorite brand, in which one creates a pattern that concretizes a GDC that is also concretized by patterns on products of the brand." + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "S. Clint Dowland" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Matthew Diller" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Sarah Bost" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "William R. Hogan" + } + ], + "comments": [ + "Instances include any process that brings it about that some specifically dependent continuant begins to stand in a concretization relation to some generically dependent continuant, as well as any process in which someone makes use of a pre-established concretization relation. To be clear, instances do not include using concretizations of words or letters for purposes that do not make use of the concretization relations in which they stand (for example, hanging up a sign in a foreign language as a decoration because one likes the colors, despite having no idea what the sign says).", + "Instances include, but are not limited to, processes that bring about cognitive concretizations." + ], + "definition": { + "val": "Process in which some participant utilizes some specifically dependent continuant as a concretization of some generically dependent continuant.", + "xrefs": [] + } + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/OMRSE_00002063", + "lbl": "linguistic concretization-utilization process", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "S. Clint Dowland" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Matthew Diller" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Sarah Dowland" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "William R. Hogan" + } + ], + "definition": { + "val": "A concretization-utilization process in which the utilized specifically dependent continuant concretizes the generically dependent through use of some language.", + "xrefs": [] + } + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/OMRSE_00002064", + "lbl": "concretization-interpretation process", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000112", + "val": "For example, reading a text message that says, “It is raining outside,” and inferring that the words on the screen are meant to convey information about the weather. The pattern on the screen that corresponds to the words is the SDC, and the ICE about the rain is the GDC. Or, hearing your spouse say, “Can you come to the kitchen?” and then knowing that your spouse wants you to come to the kitchen. You have interpreted the patterns of the sound as concretizing a GDC about what your spouse wants. Or, seeing a drawing of a basketball player and inferring—perhaps incorrectly—that it is of Michael Jordan." + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "S. Clint Dowland" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Matthew Diller" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Sarah Bost" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "William R. Hogan" + } + ], + "comments": [ + "The interpretation need not be accurate. It may even be the case that the specifically dependent continuant has not previously concretized anything." + ], + "definition": { + "val": "Process in which some participant infers that some particular specifically dependent continuant stands in the concretization relation to some particular generically dependent continuant.", + "xrefs": [] + } + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/OMRSE_00002065", + "lbl": "linguistic concretization-interpretation process", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "S. Clint Dowland" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Matthew Diller" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Sarah Bost" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "William R. Hogan" + } + ], + "definition": { + "val": "A concretization-interpretation process in which the specifically dependent continuant is inferred to concretize the generically dependent continuant in a way that makes use of some language.", + "xrefs": [] + } + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/OMRSE_00002066", + "lbl": "linguistic competence", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "S. Clint Dowland" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Mathias Brochhausen" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Matthew Diller" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "William R. Hogan" + } + ], + "comments": [ + "When realized in a concretization-utilization process, the only relevant concretization may in some cases be a cognitive one, but that suffices to realize a linguistic competence. For example, suppose one begins to write a letter, planning out the words ahead of time, but is interrupted before beginning to write and never resumes. During the process of planning out the words and what one intends to communicate, one is already concretizing words cognitively, as well as considering which combinations of words one can use to concretize additional generically dependent continuants. In doing so, one performs processes that realize one's linguistic competence, without producing any concretizations other than those cognitive ones." + ], + "definition": { + "val": "A disposition that inheres in some material entity and is such that that, if realized, it is realized by either some linguistic concretization-utilization process or some linguistic concretization-interpretation process.", + "xrefs": [] + } + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/OMRSE_00002068", + "lbl": "communication", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "S. Clint Dowland" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Mathias Brochhausen" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Matthew Diller" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "William R. Hogan" + } + ], + "comments": [ + "For example, if you tell someone, “It is raining,” you produce sounds that have patterns that concretize information about the weather. Your utilization of that concretization is part of the communication. When the other person hears you, they interpret those patterns to concretize something, which may or may not be the same as what you intended to convey. In other words, they interpret the sounds you produce to have meanings associated with them, and that interpretation process is another part of the communication. If a process does not have a part of each type, it is not a communication.", + "The interpretation need not correspond exactly to what was intended by the other participant.", + "The term 'participant' in the definition need not refer to a human agent." + ], + "definition": { + "val": "A process in which some participant shares some generically dependent continuant with some other participant. The former utilizes some specifically dependent continuant that concretizes the generically dependent continuant intended to be shared, while the latter interprets that specifically dependent continuant to concretize some particular generically dependent continuant, aiming to accurately infer the other participant’s intent.", + "xrefs": [] + } + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/OMRSE_00002069", + "lbl": "language", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "William R. Hogan" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Mathias Brochhausen" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Matthew Diller" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "S. Clint Dowland" + } + ], + "definition": { + "val": "A disposition that (i) is an aggregate of linguistic competences, considered as forming a distinct group on the basis of perceived common characteristics, such as mutual intelligibility among their bearers, in addition to historical or cultural factors; (ii) if realized, is realized in any and all realizations of those linguistic competences; and (iii) inheres in a linguistic community.", + "xrefs": [] + } + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/OMRSE_00002070", + "lbl": "disclosure of preferred language", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "S. Clint Dowland" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Mathias Brochhausen" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Matthew Diller" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "William R. Hogan" + } + ], + "definition": { + "val": "A communication in which some participant states a preference for some communicative process to be in a certain language, via some concretization of some preferred language information content entity.", + "xrefs": [] + } + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/OMRSE_00002071", + "lbl": "preferred language information content entity", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "Mathias Brochhausen" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Matthew Diller" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "S. Clint Dowland" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "William R. Hogan" + } + ], + "definition": { + "val": "An information content entity that is about some person and some language, and that conveys the language with which that person prefers to communicate within some given context.", + "xrefs": [] + } + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/OMRSE_00002072", + "lbl": "role in human social processes", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "Matthew Diller" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Mathias Brochhausen" + } + ], + "comments": [ + "Previous definition: A role played by an entity in human social processes." + ], + "definition": { + "val": "A role inhering in an entity realized by social interactions in human society.", + "xrefs": [] + } + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/OMRSE_00000002", "lbl": "party to a legal entity", @@ -7267,11 +7756,6 @@ "lbl": "acute care encounter", "type": "CLASS" }, - { - "id": "http://purl.obolibrary.org/obo/OMRSE_00000161", - "lbl": "leaving a health care facility after receiving care", - "type": "CLASS" - }, { "id": "http://purl.obolibrary.org/obo/OMRSE_00000164", "lbl": "home health care organization", @@ -7371,66 +7855,6 @@ "id": "http://purl.obolibrary.org/obo/OMRSE_00000506", "lbl": "socio-economic data item", "type": "CLASS" - }, - { - "id": "http://purl.obolibrary.org/obo/OMRSE_00002046", - "meta": { - "basicPropertyValues": [ - { - "pred": "http://purl.obolibrary.org/obo/IAO_0000111", - "val": "vocational education plan specification" - }, - { - "pred": "http://purl.obolibrary.org/obo/IAO_0000117", - "val": "William R. Hogan" - }, - { - "pred": "http://purl.obolibrary.org/obo/IAO_0000119", - "val": "http://uis.unesco.org/sites/default/files/documents/international-standard-classification-of-education-isced-2011-en.pdf" - } - ], - "comments": [ - "Vocational education programs are designed for learners to acquire the knowledge, skills and competencies specific to a particular occupation, trade, or class of occupations or trades. Such programs may have work-based components (e.g. apprenticeships, dual-system education programmes). Successful completion of such programs leads to labor market-relevant, vocational qualifications acknowledged as occupationally-oriented by the relevant national authorities and/or the labor market.", - "vocational education program" - ], - "definition": { - "val": "An educational plan specification that has a vocational objective specification as part.", - "xrefs": [] - } - }, - "type": "CLASS" - }, - { - "id": "http://purl.obolibrary.org/obo/OMRSE_00002047", - "meta": { - "basicPropertyValues": [ - { - "pred": "http://purl.obolibrary.org/obo/IAO_0000111", - "val": "kindergarten education plan specification" - }, - { - "pred": "http://purl.obolibrary.org/obo/IAO_0000117", - "val": "William R. Hogan" - }, - { - "pred": "http://purl.obolibrary.org/obo/IAO_0000117", - "val": "kindergarten education program" - }, - { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0002-9881-1017" - }, - { - "pred": "http://purl.org/dc/elements/1.1/date", - "val": "2020-09-02T12:38:43Z" - } - ], - "definition": { - "val": "A primary education plan specification that specifies the competencies and information content entities that should be acquired by students in the first year of primary education in the United States.", - "xrefs": [] - } - }, - "type": "CLASS" } ], "propertyChainAxioms": [] diff --git a/omrse-base.obo b/omrse-base.obo index 9a1645b..e702a70 100644 --- a/omrse-base.obo +++ b/omrse-base.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: omrse/releases/2021-08-30/omrse-base.owl +data-version: omrse/releases/2022-04-06/omrse-base.owl remark: This ontology grew out of efforts to represent the reality underlying the demographic information required by the US federal government's \"meaningful use\" criteria for electronic medical records and a presentation by Dr. William Hogan at the Electronic Health Record of the Future conference in Buffalo, NY http://ontology.buffalo.edu/EHR/Demographics_Hogan_Buffalo_2010_09_22.ppt ontology: omrse/omrse-base property_value: http://purl.org/dc/elements/1.1/contributor "Daniel Welch" xsd:string @@ -11,7 +11,7 @@ property_value: http://purl.org/dc/elements/1.1/creator "William Hogan" xsd:stri property_value: http://purl.org/dc/elements/1.1/type IAO:8000001 property_value: http://purl.org/dc/terms/license https://creativecommons.org/licenses/by/4.0/ xsd:string property_value: owl:versionInfo "2020-10-27" xsd:string -property_value: owl:versionInfo "2021-08-30" xsd:string +property_value: owl:versionInfo "2022-04-06" xsd:string name: The Ontology of Medically Related Social Entities [Term] @@ -35,7 +35,7 @@ property_value: IAO:0000117 "William R. Hogan" xsd:string [Term] id: OMRSE:00000002 name: party to a legal entity -is_a: OMRSE:00000024 ! role in human social processes +is_a: OMRSE:00002072 ! role in human social processes [Term] id: OMRSE:00000003 @@ -90,7 +90,7 @@ id: OMRSE:00000010 name: human health care role def: "A role in human social processes that is realized by health care processes such as seeking or providing treatment for disease and injury, diagnosing disease and injury, or undergoing diagnosis. " [] comment: Mathias Brochhausen -is_a: OMRSE:00000024 ! role in human social processes +is_a: OMRSE:00002072 ! role in human social processes relationship: BFO:0000054 OGMS:0000097 property_value: IAO:0000117 "William R. Hogan" xsd:string property_value: IAO:0000118 "health care role" xsd:string @@ -188,18 +188,19 @@ relationship: RO:0002351 NCBITaxon:9606 [Term] id: OMRSE:00000024 -name: role in human social processes +name: obsolete role in human social processes def: "A role inhering in an entity realized by social interactions in human society." [] comment: Previous definition: A role played by an entity in human social processes. -is_a: BFO:0000023 +is_a: ObsoleteClass property_value: IAO:0000117 "Mathias Brochhausen" xsd:string +is_obsolete: true [Term] id: OMRSE:00000025 name: organization social role def: "A role in human social processes that inheres in an organization." [] comment: Defined class that we will ultimately move to an application ontology. We are leaving here for now until we determine which application ontology: it is likely going to be an ontology that does not currently (2012-06-05) exist.\n\nDitto for its current descendants. -is_a: OMRSE:00000024 ! role in human social processes +is_a: OMRSE:00002072 ! role in human social processes relationship: RO:0000052 OBI:0000245 property_value: IAO:0000117 "William R. Hogan" xsd:string @@ -210,7 +211,7 @@ def: "A role in human social processes that inheres in an organism." [] comment: Defined class that we will ultimately move to an application ontology. We are leaving here for now until we determine which application ontology: it is likely going to be an ontology that does not currently (2012-06-05) exist.\n\nDitto for its current descendants. comment: Includes animals as well as humans. For example, pet, assistance animal, animal grown for food, work animal, domesticated animal, K-9, etc. Human roles include gender role, party to legal entities, health care provider roles like doctor, nurse, etc. comment: Previous definition: A role in human social processes played by an organism. -is_a: OMRSE:00000024 ! role in human social processes +is_a: OMRSE:00002072 ! role in human social processes relationship: RO:0000052 OBI:0100026 property_value: IAO:0000117 "William R. Hogan\nMathias Brochhausen" xsd:string @@ -313,7 +314,7 @@ id: OMRSE:00000038 name: legal person role def: "A role borne by a human individual or by a collection of humans regarded as possessing rights and duties enforeable at law." [] comment: We are aware of the fact that Wikipedia's definition differs from ours by saying that "Legal personality (...) is the characteristic of a non-living entity regarded by law to have the status of personhood" (http://en.wikipedia.org/wiki/Legal_personality) \nHowever, Shaw explicates:\n"In any legal system, certain entities, whether they be individuals or companies, will be regarded as possessing rights and duties enforceable at law. Thus an individual may prosecute or be prosecuted for assault and a company can sue for breach of contract. They are able to do this because the law recognises them as 'legal persons' possessing the capacity to have and to maintain certain rights, and being subject to perform specific duties. (...) In municipal law individuals, limited companies and public corporations are recognized as each possessing a distinct legal personality, the terms of which are circumscribed by the relevant legislation" (Shaw MN: International Law. Sixth Edition. Cambridge University Press, Cambridge, 2008). We hold that Shaw's position is ontological more prolific since it not only allows to explain how groups of individuals become recognized as unities at law, but also how different individuals can hold different legal personality roles (always against the context of one legal system). The latter will proof useful when dealing with the representing comatous patients or minorsat law in ontologies. -is_a: OMRSE:00000024 ! role in human social processes +is_a: OMRSE:00002072 ! role in human social processes property_value: IAO:0000117 "Mathias Brochhausen" xsd:string property_value: IAO:0000119 "Malcolm N. Shaw: International Law. Cambridge University Press, Cambridge, 2008." xsd:string @@ -452,7 +453,7 @@ property_value: IAO:0000117 "Mathias Brochhausen" xsd:string [Term] id: OMRSE:00000054 name: hospital role -def: "A healthcare provider role that inheres in an organization and is realized by providing inpatient and outpatient care." [] +def: "A healthcare provider role that inheres in an organization and is realized by providing inpatient care." [] is_a: OMRSE:00000015 ! health care provider organization role property_value: IAO:0000117 "Mathias Brochhausen" xsd:string @@ -616,7 +617,7 @@ property_value: IAO:0000117 "Amanda Hicks" xsd:string id: OMRSE:00000077 name: job role def: "A role in human social processes that, if realized, is realized when the bearer provides labor or services in exchange for a wage or salary as specified by some deontic declaration." [] -is_a: OMRSE:00000024 ! role in human social processes +is_a: OMRSE:00002072 ! role in human social processes relationship: BFO:0000054 OMRSE:00000146 ! employment process property_value: IAO:0000117 "Amanda hicks" xsd:string property_value: IAO:0000118 "employee" xsd:string @@ -687,7 +688,7 @@ property_value: IAO:0000118 "human organizational role" xsd:string id: OMRSE:00000087 name: employer role def: "a role in human social processes that is realized when the bearer provides a wage or salary in exchange for some labour or services as specified by some declaration" [] -is_a: OMRSE:00000024 ! role in human social processes +is_a: OMRSE:00002072 ! role in human social processes relationship: BFO:0000054 OMRSE:00000146 ! employment process [Term] @@ -719,7 +720,7 @@ property_value: IAO:0000117 "Amanda Hicks" xsd:string id: OMRSE:00000092 name: insured party role def: "A role that inheres in an organism that is able to receive benefits from an insurance policy. The role, if realized, is realized by receiving benefits that are covered by the insurance policy." [] -is_a: OMRSE:00000024 ! role in human social processes +is_a: OMRSE:00002072 ! role in human social processes property_value: IAO:0000117 "Amanda Hicks" xsd:string [Term] @@ -738,7 +739,7 @@ property_value: IAO:0000117 "Amanda Hicks" xsd:string [Term] id: OMRSE:00000095 name: payer role -is_a: OMRSE:00000024 ! role in human social processes +is_a: OMRSE:00002072 ! role in human social processes [Term] id: OMRSE:00000096 @@ -1189,7 +1190,10 @@ is_a: OGMS:0000097 [Term] id: OMRSE:00000161 name: leaving a health care facility after receiving care +def: "A process (1) where the active participant, who at the beginning of the process is located in a healthcare facility, exits the facility and no longer stands in a \"located in\" relationship to the facility and (2) is immediately preceded by a healthcare encounter in which the active participant also participated." [] is_a: BFO:0000015 +relationship: RO:0002087 OGMS:0000097 +property_value: IAO:0000117 "William R. Hogan" xsd:string [Term] id: OMRSE:00000162 @@ -1394,47 +1398,44 @@ property_value: IAO:0000119 "Modified version of definition provided by Human Be [Term] id: OMRSE:00000192 -name: communication +name: obsolete communication def: "A process in which some participant shares some information content entity about some state of that participant with some other participant." [] comment: The term 'participant' in the definition need not refer to a human agent. -is_a: BFO:0000015 -relationship: RO:0000057 BFO:0000040 -relationship: RO:0000057 IAO:0000030 +is_a: ObsoleteClass property_value: http://purl.org/dc/elements/1.1/contributor "Mathias Brochhausen" xsd:string property_value: http://purl.org/dc/elements/1.1/contributor "Matthew Diller" xsd:string property_value: http://purl.org/dc/elements/1.1/contributor "William R. Hogan" xsd:string property_value: IAO:0000117 "S. Clint Dowland" xsd:string +is_obsolete: true [Term] id: OMRSE:00000193 -name: linguistic competence +name: obsolete linguistic competence def: "A disposition inhering in a material entity that, if realized, is realized by that material entity’s communicating via some linguistic concretization." [] -is_a: BFO:0000016 -relationship: BFO:0000054 OMRSE:00000192 ! communication -relationship: RO:0000052 BFO:0000040 +is_a: ObsoleteClass property_value: http://purl.org/dc/elements/1.1/contributor "Mathias Brochhausen" xsd:string property_value: http://purl.org/dc/elements/1.1/contributor "Matthew Diller" xsd:string property_value: http://purl.org/dc/elements/1.1/contributor "William R. Hogan" xsd:string property_value: IAO:0000117 "S. Clint Dowland" xsd:string +is_obsolete: true [Term] id: OMRSE:00000194 -name: language +name: obsolete language def: "A disposition inhering in a linguistic community that (i) is a maximal aggregate of communicatively compatible linguistic competences, and (ii) if realized, is realized by any and all realizations of those linguistic competences." [] -is_a: BFO:0000016 -relationship: BFO:0000054 OMRSE:00000192 ! communication -relationship: RO:0002351 OMRSE:00000193 ! linguistic competence +is_a: ObsoleteClass property_value: http://purl.org/dc/elements/1.1/contributor "Mathias Brochhausen" xsd:string property_value: http://purl.org/dc/elements/1.1/contributor "Matthew Diller" xsd:string property_value: http://purl.org/dc/elements/1.1/contributor "S. Clint Dowland" xsd:string property_value: IAO:0000117 "William R. Hogan" xsd:string +is_obsolete: true [Term] id: OMRSE:00000195 name: linguistic community def: "A maximal aggregate of material entities such that each member bears a linguistic competence for the same language." [] is_a: BFO:0000040 -relationship: RO:0000053 OMRSE:00000194 ! language +relationship: RO:0000053 OMRSE:00002069 ! language property_value: http://purl.org/dc/elements/1.1/contributor "Mathias Brochhausen" xsd:string property_value: http://purl.org/dc/elements/1.1/contributor "S. Clint Dowland" xsd:string property_value: http://purl.org/dc/elements/1.1/contributor "William R. Hogan" xsd:string @@ -1442,25 +1443,25 @@ property_value: IAO:0000117 "Matthew Diller" xsd:string [Term] id: OMRSE:00000196 -name: expression of preferred language +name: obsolete expression of preferred language def: "A communication in which some participant states a preference for some communicative process to be in a certain language, and that has a concretization of a preferred language information content entity as its specified output." [] -is_a: OMRSE:00000192 ! communication +is_a: OMRSE:00000192 ! obsolete communication property_value: http://purl.org/dc/elements/1.1/contributor "Mathias Brochhausen" xsd:string property_value: http://purl.org/dc/elements/1.1/contributor "Matthew Diller" xsd:string property_value: http://purl.org/dc/elements/1.1/contributor "William R. Hogan" xsd:string property_value: IAO:0000117 "S. Clint Dowland" xsd:string +is_obsolete: true [Term] id: OMRSE:00000197 -name: preferred language information content entity +name: obsolete preferred language information content entity def: "An information content entity that (i) is about some person, some language, and some linguistic competence; and (ii) conveys the language with which that person prefers to communicate within some given context." [] -is_a: IAO:0000030 -relationship: IAO:0000136 OMRSE:00000193 ! linguistic competence -relationship: IAO:0000136 OMRSE:00000194 ! language +is_a: ObsoleteClass property_value: http://purl.org/dc/elements/1.1/contributor "Matthew Diller" xsd:string property_value: http://purl.org/dc/elements/1.1/contributor "S. Clint Dowland" xsd:string property_value: http://purl.org/dc/elements/1.1/contributor "William R. Hogan" xsd:string property_value: IAO:0000117 "Mathias Brochhausen" xsd:string +is_obsolete: true [Term] id: OMRSE:00000198 @@ -1468,7 +1469,7 @@ name: information content entity-request process def: "a communication in which some participant requests of some other participant an information content entity about some portion of reality" [] comment: As with the parent class, 'participant' in the definition need not refer to a human agent. comment: The medium and grammatical form are irrelevant. For example, the request may be written or spoken, and while it may be in the form of a question, it need not be. -is_a: OMRSE:00000192 ! communication +is_a: OMRSE:00002068 ! communication property_value: IAO:0000117 "S. Clint Dowland" xsd:string [Term] @@ -1963,7 +1964,7 @@ def: "An educating that realizes a concretization of some program of education." comment: Note that parent class 'educating' and referenced class 'program of education' are defined elsewhere in this education module of OMRSE. comment: This class refers extremely broadly to the successful realization of any program of education: a single course, first grade, MD, PhD, high school, the ninth grade, getting a black belt in karate, getting a master mechanic certification, a bachelor's degree, a masters degree, a graduate certificate, early childhood education program, and even getting a certificate at the end of some week-long workshop, summer camp, a certifcate from a cooking class, an actuarial certification. is_a: OMRSE:00002029 ! education process -property_value: IAO:0000111 "completing a program of eduction" xsd:string +property_value: IAO:0000111 "completing a program of education" xsd:string property_value: IAO:0000117 "William R. Hogan" xsd:string [Term] @@ -2103,7 +2104,7 @@ property_value: IAO:0000119 http://uis.unesco.org/sites/default/files/documents/ [Term] id: OMRSE:00002045 name: highest level of education data item -def: "A socio-economic data item that is about a person and their completion of an education program (and its type), where that education progam is the last one in a sequence (of education programs) that the person has completed, where each education program completed except the last one is a pre-requisite to the education program completed after it." [] +def: "A socio-economic data item that is about a person and their completion of an education program (and its type), where that education program is the last one in a sequence (of education programs) that the person has completed, where each education program completed except the last one is a pre-requisite to the education program completed after it." [] comment: This data item in a typical attribute-value system such as table, XML, JSON takes values like "secondary education", "Associate Degree", "Bachelor Degree", "High School", and so on. is_a: OMRSE:00000506 ! socio-economic data item property_value: IAO:0000111 "highest level of education socio-economic data item" xsd:string @@ -2111,8 +2112,8 @@ property_value: IAO:0000117 "William R. Hogan" xsd:string [Term] id: OMRSE:00002046 +name: vocational education program def: "An educational plan specification that has a vocational objective specification as part." [] -comment: vocational education program comment: Vocational education programs are designed for learners to acquire the knowledge, skills and competencies specific to a particular occupation, trade, or class of occupations or trades. Such programs may have work-based components (e.g. apprenticeships, dual-system education programmes). Successful completion of such programs leads to labor market-relevant, vocational qualifications acknowledged as occupationally-oriented by the relevant national authorities and/or the labor market. is_a: OMRSE:00002031 ! educational program intersection_of: OMRSE:00002031 ! educational program @@ -2123,12 +2124,12 @@ property_value: IAO:0000119 http://uis.unesco.org/sites/default/files/documents/ [Term] id: OMRSE:00002047 +name: kindergarten education program def: "A primary education plan specification that specifies the competencies and information content entities that should be acquired by students in the first year of primary education in the United States." [] is_a: OMRSE:00002034 ! primary education program property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0002-9881-1017 property_value: http://purl.org/dc/elements/1.1/date 2020-09-02T12:38:43Z xsd:dateTime property_value: IAO:0000111 "kindergarten education plan specification" xsd:string -property_value: IAO:0000117 "kindergarten education program" xsd:string property_value: IAO:0000117 "William R. Hogan" xsd:string [Term] @@ -2279,6 +2280,134 @@ property_value: http://purl.org/dc/elements/1.1/contributor "S. Clint Dowland" x property_value: http://purl.org/dc/elements/1.1/contributor "William R. Hogan" xsd:string property_value: IAO:0000119 http://purl.obolibrary.org/obo/ERO_0002033 xsd:string +[Term] +id: OMRSE:00002061 +name: monetary personal income data item +def: "A data item that is about the sum of earnings for some person(s) from various forms of payment or profits." [] +comment: We use the phrase ‘some person’ in the definition because this class can be about an individual's or a household's earnings. Similarly, we use 'personal income' in the label because the term is typically restricted to individuals and households. This class is also restricted to being about monetary forms of income. +is_a: IAO:0000027 +property_value: http://purl.org/dc/elements/1.1/contributor "Chris Stoeckert" xsd:string +property_value: IAO:0000112 "Examples of monetary forms of payment include: wages, salary, or tips; interest generated by capital; dividends earned; lottery, game, or contest monetary winnings; alimony; royalties; trusts; pensions; receipt of rental payments; unemployment payments; social security payments; worker's compensation; social security payments; or profit from entrepreneurial activities." xsd:string +property_value: IAO:0000117 "Matthew Diller" xsd:string + +[Term] +id: OMRSE:00002062 +name: concretization-utilization process +def: "Process in which some participant utilizes some specifically dependent continuant as a concretization of some generically dependent continuant." [] +comment: Instances include any process that brings it about that some specifically dependent continuant begins to stand in a concretization relation to some generically dependent continuant, as well as any process in which someone makes use of a pre-established concretization relation. To be clear, instances do not include using concretizations of words or letters for purposes that do not make use of the concretization relations in which they stand (for example, hanging up a sign in a foreign language as a decoration because one likes the colors, despite having no idea what the sign says). +comment: Instances include, but are not limited to, processes that bring about cognitive concretizations. +is_a: BFO:0000015 +relationship: RO:0000057 BFO:0000040 +property_value: http://purl.org/dc/elements/1.1/contributor "Matthew Diller" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Sarah Bost" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "William R. Hogan" xsd:string +property_value: IAO:0000112 "Taking notes on a meeting is an example in which the concretization relation is newly established, since the SDCs that concretize the GDCs come into existence as the notes are written. In contrast, using slides prepared by someone else in order to convey information during a presentation is a case of using a concretization in which the performer neither brings the concretizing SDCs into existence nor is responsible for their standing in the concretization relation to the relevant GDCs. A nonlinguistic example is drawing the logo of one’s favorite brand, in which one creates a pattern that concretizes a GDC that is also concretized by patterns on products of the brand." xsd:string +property_value: IAO:0000117 "S. Clint Dowland" xsd:string + +[Term] +id: OMRSE:00002063 +name: linguistic concretization-utilization process +def: "A concretization-utilization process in which the utilized specifically dependent continuant concretizes the generically dependent through use of some language." [] +is_a: OMRSE:00002062 ! concretization-utilization process +property_value: http://purl.org/dc/elements/1.1/contributor "Matthew Diller" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Sarah Dowland" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "William R. Hogan" xsd:string +property_value: IAO:0000117 "S. Clint Dowland" xsd:string + +[Term] +id: OMRSE:00002064 +name: concretization-interpretation process +def: "Process in which some participant infers that some particular specifically dependent continuant stands in the concretization relation to some particular generically dependent continuant." [] +comment: The interpretation need not be accurate. It may even be the case that the specifically dependent continuant has not previously concretized anything. +is_a: BFO:0000015 +relationship: RO:0000057 BFO:0000020 +relationship: RO:0000057 BFO:0000040 +property_value: http://purl.org/dc/elements/1.1/contributor "Matthew Diller" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Sarah Bost" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "William R. Hogan" xsd:string +property_value: IAO:0000112 "For example, reading a text message that says, “It is raining outside,” and inferring that the words on the screen are meant to convey information about the weather. The pattern on the screen that corresponds to the words is the SDC, and the ICE about the rain is the GDC. Or, hearing your spouse say, “Can you come to the kitchen?” and then knowing that your spouse wants you to come to the kitchen. You have interpreted the patterns of the sound as concretizing a GDC about what your spouse wants. Or, seeing a drawing of a basketball player and inferring—perhaps incorrectly—that it is of Michael Jordan." xsd:string +property_value: IAO:0000117 "S. Clint Dowland" xsd:string + +[Term] +id: OMRSE:00002065 +name: linguistic concretization-interpretation process +def: "A concretization-interpretation process in which the specifically dependent continuant is inferred to concretize the generically dependent continuant in a way that makes use of some language." [] +is_a: OMRSE:00002064 ! concretization-interpretation process +property_value: http://purl.org/dc/elements/1.1/contributor "Matthew Diller" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Sarah Bost" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "William R. Hogan" xsd:string +property_value: IAO:0000117 "S. Clint Dowland" xsd:string + +[Term] +id: OMRSE:00002066 +name: linguistic competence +def: "A disposition that inheres in some material entity and is such that that, if realized, it is realized by either some linguistic concretization-utilization process or some linguistic concretization-interpretation process." [] +comment: When realized in a concretization-utilization process, the only relevant concretization may in some cases be a cognitive one, but that suffices to realize a linguistic competence. For example, suppose one begins to write a letter, planning out the words ahead of time, but is interrupted before beginning to write and never resumes. During the process of planning out the words and what one intends to communicate, one is already concretizing words cognitively, as well as considering which combinations of words one can use to concretize additional generically dependent continuants. In doing so, one performs processes that realize one's linguistic competence, without producing any concretizations other than those cognitive ones. +is_a: BFO:0000016 +relationship: RO:0000052 BFO:0000040 +property_value: http://purl.org/dc/elements/1.1/contributor "Mathias Brochhausen" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Matthew Diller" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "William R. Hogan" xsd:string +property_value: IAO:0000117 "S. Clint Dowland" xsd:string + +[Term] +id: OMRSE:00002068 +name: communication +def: "A process in which some participant shares some generically dependent continuant with some other participant. The former utilizes some specifically dependent continuant that concretizes the generically dependent continuant intended to be shared, while the latter interprets that specifically dependent continuant to concretize some particular generically dependent continuant, aiming to accurately infer the other participant’s intent." [] +comment: For example, if you tell someone, “It is raining,” you produce sounds that have patterns that concretize information about the weather. Your utilization of that concretization is part of the communication. When the other person hears you, they interpret those patterns to concretize something, which may or may not be the same as what you intended to convey. In other words, they interpret the sounds you produce to have meanings associated with them, and that interpretation process is another part of the communication. If a process does not have a part of each type, it is not a communication. +comment: The interpretation need not correspond exactly to what was intended by the other participant. +comment: The term 'participant' in the definition need not refer to a human agent. +is_a: BFO:0000015 +relationship: RO:0000057 BFO:0000040 +property_value: http://purl.org/dc/elements/1.1/contributor "Mathias Brochhausen" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Matthew Diller" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "William R. Hogan" xsd:string +property_value: IAO:0000117 "S. Clint Dowland" xsd:string + +[Term] +id: OMRSE:00002069 +name: language +def: "A disposition that (i) is an aggregate of linguistic competences, considered as forming a distinct group on the basis of perceived common characteristics, such as mutual intelligibility among their bearers, in addition to historical or cultural factors; (ii) if realized, is realized in any and all realizations of those linguistic competences; and (iii) inheres in a linguistic community." [] +is_a: BFO:0000016 +relationship: RO:0002351 OMRSE:00002066 ! linguistic competence +property_value: http://purl.org/dc/elements/1.1/contributor "Mathias Brochhausen" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Matthew Diller" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "S. Clint Dowland" xsd:string +property_value: IAO:0000117 "William R. Hogan" xsd:string + +[Term] +id: OMRSE:00002070 +name: disclosure of preferred language +def: "A communication in which some participant states a preference for some communicative process to be in a certain language, via some concretization of some preferred language information content entity." [] +is_a: OMRSE:00002068 ! communication +property_value: http://purl.org/dc/elements/1.1/contributor "Mathias Brochhausen" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Matthew Diller" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "William R. Hogan" xsd:string +property_value: IAO:0000117 "S. Clint Dowland" xsd:string + +[Term] +id: OMRSE:00002071 +name: preferred language information content entity +def: "An information content entity that is about some person and some language, and that conveys the language with which that person prefers to communicate within some given context." [] +is_a: IAO:0000030 +relationship: IAO:0000136 BFO:0000040 +relationship: IAO:0000136 OMRSE:00002069 ! language +property_value: http://purl.org/dc/elements/1.1/contributor "Matthew Diller" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "S. Clint Dowland" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "William R. Hogan" xsd:string +property_value: IAO:0000117 "Mathias Brochhausen" xsd:string + +[Term] +id: OMRSE:00002072 +name: role in human social processes +def: "A role inhering in an entity realized by social interactions in human society." [] +comment: Previous definition: A role played by an entity in human social processes. +is_a: BFO:0000023 +relationship: RO:0000052 BFO:0000040 +relationship: RO:0000052 BFO:0000040 +property_value: http://purl.org/dc/elements/1.1/contributor "Mathias Brochhausen" xsd:string +property_value: IAO:0000117 "Matthew Diller" xsd:string + [Term] id: PCO:0000020 is_a: OMRSE:00000022 ! aggregate of objectual organisms diff --git a/omrse-base.owl b/omrse-base.owl index fcc6c86..8c8a745 100644 --- a/omrse-base.owl +++ b/omrse-base.owl @@ -10,7 +10,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + Daniel Welch Amanda Hicks Mathias Brochhausen @@ -22,7 +22,7 @@ This ontology grew out of efforts to represent the reality underlying the demographic information required by the US federal government's "meaningful use" criteria for electronic medical records and a presentation by Dr. William Hogan at the Electronic Health Record of the Future conference in Buffalo, NY http://ontology.buffalo.edu/EHR/Demographics_Hogan_Buffalo_2010_09_22.ppt The Ontology of Medically Related Social Entities 2020-10-27 - 2021-08-30 + 2022-04-06 @@ -416,12 +416,24 @@ We expect BFO 2.0 to have this relation as well, and we will obsolete this prope + + + + + + + + + + + + @@ -565,6 +577,12 @@ We expect BFO 2.0 to have this relation as well, and we will obsolete this prope + + + + + + @@ -810,7 +828,7 @@ We expect BFO 2.0 to have this relation as well, and we will obsolete this prope - + @@ -959,7 +977,7 @@ We expect BFO 2.0 to have this relation as well, and we will obsolete this prope - + @@ -1218,37 +1236,12 @@ We expect BFO 2.0 to have this relation as well, and we will obsolete this prope - - - - - - - - - - - - - - - - - - - - - - - - - - - + A role inhering in an entity realized by social interactions in human society. Mathias Brochhausen Previous definition: A role played by an entity in human social processes. - role in human social processes + obsolete role in human social processes + true @@ -1256,7 +1249,7 @@ We expect BFO 2.0 to have this relation as well, and we will obsolete this prope - + @@ -1276,7 +1269,7 @@ Ditto for its current descendants. - + @@ -1466,7 +1459,7 @@ Amanda Hicks - + @@ -1777,7 +1770,7 @@ Note: this definition was taken over from "geopolitical organization". - A healthcare provider role that inheres in an organization and is realized by providing inpatient and outpatient care. + A healthcare provider role that inheres in an organization and is realized by providing inpatient care. Mathias Brochhausen hospital role @@ -2230,50 +2223,45 @@ A patient sustaining an injury who has been admitted to the hospital, transferre - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A role in human social processes that, if realized, is realized when the bearer provides labor or services in exchange for a wage or salary as specified by some deontic declaration. Amanda hicks employee @@ -2437,7 +2425,7 @@ last accessed June 30, 2015 - + @@ -2557,11 +2545,11 @@ last accessed June 30, 2015 - + - + @@ -2687,7 +2675,7 @@ last accessed June 30, 2015 - + payer role @@ -3830,6 +3818,14 @@ Somehow involves skilled nursing encounters + + + + + + + A process (1) where the active participant, who at the beginning of the process is located in a healthcare facility, exits the facility and no longer stands in a "located in" relationship to the facility and (2) is immediately preceded by a healthcare encounter in which the active participant also participated. + William R. Hogan leaving a health care facility after receiving care @@ -4229,26 +4225,15 @@ Somehow involves skilled nursing encounters - - - - - - - - - - - - - + A process in which some participant shares some information content entity about some state of that participant with some other participant. S. Clint Dowland Mathias Brochhausen Matthew Diller William R. Hogan The term 'participant' in the definition need not refer to a human agent. - communication + obsolete communication + true @@ -4256,25 +4241,14 @@ Somehow involves skilled nursing encounters - - - - - - - - - - - - - + A disposition inhering in a material entity that, if realized, is realized by that material entity’s communicating via some linguistic concretization. S. Clint Dowland Mathias Brochhausen Matthew Diller William R. Hogan - linguistic competence + obsolete linguistic competence + true @@ -4282,33 +4256,14 @@ Somehow involves skilled nursing encounters - - - - - - - - - - - - - - - - - - - - - + A disposition inhering in a linguistic community that (i) is a maximal aggregate of communicatively compatible linguistic competences, and (ii) if realized, is realized by any and all realizations of those linguistic competences. William R. Hogan Mathias Brochhausen Matthew Diller S. Clint Dowland - language + obsolete language + true @@ -4318,43 +4273,25 @@ Somehow involves skilled nursing encounters - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + - - + + + + + + + + + + + + A maximal aggregate of material entities such that each member bears a linguistic competence for the same language. @@ -4392,7 +4329,8 @@ Somehow involves skilled nursing encounters Mathias Brochhausen Matthew Diller William R. Hogan - expression of preferred language + obsolete expression of preferred language + true @@ -4400,41 +4338,14 @@ Somehow involves skilled nursing encounters - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + An information content entity that (i) is about some person, some language, and some linguistic competence; and (ii) conveys the language with which that person prefers to communicate within some given context. Mathias Brochhausen Matthew Diller S. Clint Dowland William R. Hogan - preferred language information content entity + obsolete preferred language information content entity + true @@ -4442,7 +4353,7 @@ Somehow involves skilled nursing encounters - + a communication in which some participant requests of some other participant an information content entity about some portion of reality S. Clint Dowland As with the parent class, 'participant' in the definition need not refer to a human agent. @@ -5234,7 +5145,7 @@ On the other hand, in the case of those who are self-taught by reading books or - completing a program of eduction + completing a program of education An educating that realizes a concretization of some program of education. William R. Hogan Note that parent class 'educating' and referenced class 'program of education' are defined elsewhere in this education module of OMRSE. @@ -5622,7 +5533,7 @@ On the other hand, in the case of those who are self-taught by reading books or highest level of education socio-economic data item - A socio-economic data item that is about a person and their completion of an education program (and its type), where that education progam is the last one in a sequence (of education programs) that the person has completed, where each education program completed except the last one is a pre-requisite to the education program completed after it. + A socio-economic data item that is about a person and their completion of an education program (and its type), where that education program is the last one in a sequence (of education programs) that the person has completed, where each education program completed except the last one is a pre-requisite to the education program completed after it. William R. Hogan This data item in a typical attribute-value system such as table, XML, JSON takes values like "secondary education", "Associate Degree", "Bachelor Degree", "High School", and so on. highest level of education data item @@ -5650,7 +5561,7 @@ On the other hand, in the case of those who are self-taught by reading books or William R. Hogan http://uis.unesco.org/sites/default/files/documents/international-standard-classification-of-education-isced-2011-en.pdf Vocational education programs are designed for learners to acquire the knowledge, skills and competencies specific to a particular occupation, trade, or class of occupations or trades. Such programs may have work-based components (e.g. apprenticeships, dual-system education programmes). Successful completion of such programs leads to labor market-relevant, vocational qualifications acknowledged as occupationally-oriented by the relevant national authorities and/or the labor market. - vocational education program + vocational education program @@ -5662,9 +5573,9 @@ On the other hand, in the case of those who are self-taught by reading books or kindergarten education plan specification A primary education plan specification that specifies the competencies and information content entities that should be acquired by students in the first year of primary education in the United States. William R. Hogan - kindergarten education program 2020-09-02T12:38:43Z + kindergarten education program @@ -5877,6 +5788,376 @@ It indicates that a person has completed only early childhood education and noth + + + + + Examples of monetary forms of payment include: wages, salary, or tips; interest generated by capital; dividends earned; lottery, game, or contest monetary winnings; alimony; royalties; trusts; pensions; receipt of rental payments; unemployment payments; social security payments; worker's compensation; social security payments; or profit from entrepreneurial activities. + A data item that is about the sum of earnings for some person(s) from various forms of payment or profits. + Matthew Diller + Chris Stoeckert + We use the phrase ‘some person’ in the definition because this class can be about an individual's or a household's earnings. Similarly, we use 'personal income' in the label because the term is typically restricted to individuals and households. This class is also restricted to being about monetary forms of income. + monetary personal income data item + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Taking notes on a meeting is an example in which the concretization relation is newly established, since the SDCs that concretize the GDCs come into existence as the notes are written. In contrast, using slides prepared by someone else in order to convey information during a presentation is a case of using a concretization in which the performer neither brings the concretizing SDCs into existence nor is responsible for their standing in the concretization relation to the relevant GDCs. A nonlinguistic example is drawing the logo of one’s favorite brand, in which one creates a pattern that concretizes a GDC that is also concretized by patterns on products of the brand. + Process in which some participant utilizes some specifically dependent continuant as a concretization of some generically dependent continuant. + S. Clint Dowland + Matthew Diller + Sarah Bost + William R. Hogan + Instances include any process that brings it about that some specifically dependent continuant begins to stand in a concretization relation to some generically dependent continuant, as well as any process in which someone makes use of a pre-established concretization relation. To be clear, instances do not include using concretizations of words or letters for purposes that do not make use of the concretization relations in which they stand (for example, hanging up a sign in a foreign language as a decoration because one likes the colors, despite having no idea what the sign says). + Instances include, but are not limited to, processes that bring about cognitive concretizations. + concretization-utilization process + + + + + + + + + + + + + + + + + + + + + + + + + A concretization-utilization process in which the utilized specifically dependent continuant concretizes the generically dependent through use of some language. + S. Clint Dowland + Matthew Diller + Sarah Dowland + William R. Hogan + linguistic concretization-utilization process + + + + + + + + + + + + + + + + + + + + + For example, reading a text message that says, “It is raining outside,” and inferring that the words on the screen are meant to convey information about the weather. The pattern on the screen that corresponds to the words is the SDC, and the ICE about the rain is the GDC. Or, hearing your spouse say, “Can you come to the kitchen?” and then knowing that your spouse wants you to come to the kitchen. You have interpreted the patterns of the sound as concretizing a GDC about what your spouse wants. Or, seeing a drawing of a basketball player and inferring—perhaps incorrectly—that it is of Michael Jordan. + Process in which some participant infers that some particular specifically dependent continuant stands in the concretization relation to some particular generically dependent continuant. + S. Clint Dowland + Matthew Diller + Sarah Bost + William R. Hogan + The interpretation need not be accurate. It may even be the case that the specifically dependent continuant has not previously concretized anything. + concretization-interpretation process + + + + + + + + + + + + + + + + + + + + + + + + + A concretization-interpretation process in which the specifically dependent continuant is inferred to concretize the generically dependent continuant in a way that makes use of some language. + S. Clint Dowland + Matthew Diller + Sarah Bost + William R. Hogan + linguistic concretization-interpretation process + + + + + + + + + + + + + + + + + + + + + + + + + + + + A disposition that inheres in some material entity and is such that that, if realized, it is realized by either some linguistic concretization-utilization process or some linguistic concretization-interpretation process. + S. Clint Dowland + Mathias Brochhausen + Matthew Diller + William R. Hogan + When realized in a concretization-utilization process, the only relevant concretization may in some cases be a cognitive one, but that suffices to realize a linguistic competence. For example, suppose one begins to write a letter, planning out the words ahead of time, but is interrupted before beginning to write and never resumes. During the process of planning out the words and what one intends to communicate, one is already concretizing words cognitively, as well as considering which combinations of words one can use to concretize additional generically dependent continuants. In doing so, one performs processes that realize one's linguistic competence, without producing any concretizations other than those cognitive ones. + linguistic competence + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A process in which some participant shares some generically dependent continuant with some other participant. The former utilizes some specifically dependent continuant that concretizes the generically dependent continuant intended to be shared, while the latter interprets that specifically dependent continuant to concretize some particular generically dependent continuant, aiming to accurately infer the other participant’s intent. + S. Clint Dowland + Mathias Brochhausen + Matthew Diller + William R. Hogan + For example, if you tell someone, “It is raining,” you produce sounds that have patterns that concretize information about the weather. Your utilization of that concretization is part of the communication. When the other person hears you, they interpret those patterns to concretize something, which may or may not be the same as what you intended to convey. In other words, they interpret the sounds you produce to have meanings associated with them, and that interpretation process is another part of the communication. If a process does not have a part of each type, it is not a communication. + The interpretation need not correspond exactly to what was intended by the other participant. + The term 'participant' in the definition need not refer to a human agent. + communication + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A disposition that (i) is an aggregate of linguistic competences, considered as forming a distinct group on the basis of perceived common characteristics, such as mutual intelligibility among their bearers, in addition to historical or cultural factors; (ii) if realized, is realized in any and all realizations of those linguistic competences; and (iii) inheres in a linguistic community. + William R. Hogan + Mathias Brochhausen + Matthew Diller + S. Clint Dowland + language + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A communication in which some participant states a preference for some communicative process to be in a certain language, via some concretization of some preferred language information content entity. + S. Clint Dowland + Mathias Brochhausen + Matthew Diller + William R. Hogan + disclosure of preferred language + + + + + + + + + + + + + + + + + + + + + An information content entity that is about some person and some language, and that conveys the language with which that person prefers to communicate within some given context. + Mathias Brochhausen + Matthew Diller + S. Clint Dowland + William R. Hogan + preferred language information content entity + + + + + + + + + + + + + + + + + + + + + A role inhering in an entity realized by social interactions in human society. + Matthew Diller + Mathias Brochhausen + Previous definition: A role played by an entity in human social processes. + role in human social processes + + + + diff --git a/omrse-full.json b/omrse-full.json index e274d48..4abf138 100644 --- a/omrse-full.json +++ b/omrse-full.json @@ -24,6 +24,11 @@ "pred": "http://purl.obolibrary.org/obo/BFO_0000050", "sub": "http://purl.obolibrary.org/obo/BFO_0000017" }, + { + "obj": "http://purl.obolibrary.org/obo/BFO_0000019", + "pred": "http://purl.obolibrary.org/obo/BFO_0000050", + "sub": "http://purl.obolibrary.org/obo/BFO_0000019" + }, { "obj": "http://purl.obolibrary.org/obo/BFO_0000020", "pred": "http://purl.obolibrary.org/obo/BFO_0000050", @@ -44,6 +49,11 @@ "pred": "http://purl.obolibrary.org/obo/RO_0000052", "sub": "http://purl.obolibrary.org/obo/OMRSE_00000048" }, + { + "obj": "http://purl.obolibrary.org/obo/BFO_0000040", + "pred": "http://purl.obolibrary.org/obo/RO_0000052", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002072" + }, { "obj": "http://purl.obolibrary.org/obo/NCBITaxon_9606", "pred": "http://purl.obolibrary.org/obo/RO_0000052", @@ -193,6 +203,15 @@ "http://purl.obolibrary.org/obo/BFO_0000002" ] }, + { + "domainClassIds": [ + "http://purl.obolibrary.org/obo/BFO_0000003" + ], + "predicateId": "http://purl.obolibrary.org/obo/RO_0002012", + "rangeClassIds": [ + "http://purl.obolibrary.org/obo/BFO_0000003" + ] + }, { "domainClassIds": [ "http://purl.obolibrary.org/obo/BFO_0000003" @@ -328,6 +347,15 @@ "http://purl.obolibrary.org/obo/BFO_0000015" ] }, + { + "domainClassIds": [ + "http://purl.obolibrary.org/obo/BFO_0000015" + ], + "predicateId": "http://purl.obolibrary.org/obo/RO_0019000", + "rangeClassIds": [ + "http://purl.obolibrary.org/obo/PATO_0000001" + ] + }, { "domainClassIds": [ "http://purl.obolibrary.org/obo/BFO_0000017" @@ -713,7 +741,17 @@ { "obj": "http://purl.obolibrary.org/obo/BFO_0000015", "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000192" + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002062" + }, + { + "obj": "http://purl.obolibrary.org/obo/BFO_0000015", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002064" + }, + { + "obj": "http://purl.obolibrary.org/obo/BFO_0000015", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002068" }, { "obj": "http://purl.obolibrary.org/obo/BFO_0000016", @@ -723,17 +761,17 @@ { "obj": "http://purl.obolibrary.org/obo/BFO_0000016", "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000193" + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002058" }, { "obj": "http://purl.obolibrary.org/obo/BFO_0000016", "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000194" + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002066" }, { "obj": "http://purl.obolibrary.org/obo/BFO_0000016", "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00002058" + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002069" }, { "obj": "http://purl.obolibrary.org/obo/BFO_0000017", @@ -785,6 +823,11 @@ "pred": "is_a", "sub": "http://purl.org/obo/owl/PATO#PATO_0001025" }, + { + "obj": "http://purl.obolibrary.org/obo/BFO_0000020", + "pred": "http://purl.obolibrary.org/obo/RO_0000057", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002064" + }, { "obj": "http://purl.obolibrary.org/obo/BFO_0000020", "pred": "is_a", @@ -795,6 +838,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/BFO_0000019" }, + { + "obj": "http://purl.obolibrary.org/obo/BFO_0000020", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/PATO_0000001" + }, { "obj": "http://purl.obolibrary.org/obo/BFO_0000023", "pred": "is_a", @@ -825,11 +873,6 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/IAO_0021031" }, - { - "obj": "http://purl.obolibrary.org/obo/BFO_0000023", - "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000024" - }, { "obj": "http://purl.obolibrary.org/obo/BFO_0000023", "pred": "is_a", @@ -955,6 +998,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/OMRSE_00000097" }, + { + "obj": "http://purl.obolibrary.org/obo/BFO_0000040", + "pred": "http://purl.obolibrary.org/obo/IAO_0000136", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002071" + }, { "obj": "http://purl.obolibrary.org/obo/BFO_0000040", "pred": "http://purl.obolibrary.org/obo/OBI_0000299", @@ -968,12 +1016,22 @@ { "obj": "http://purl.obolibrary.org/obo/BFO_0000040", "pred": "http://purl.obolibrary.org/obo/RO_0000052", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000193" + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002066" }, { "obj": "http://purl.obolibrary.org/obo/BFO_0000040", "pred": "http://purl.obolibrary.org/obo/RO_0000057", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000192" + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002062" + }, + { + "obj": "http://purl.obolibrary.org/obo/BFO_0000040", + "pred": "http://purl.obolibrary.org/obo/RO_0000057", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002064" + }, + { + "obj": "http://purl.obolibrary.org/obo/BFO_0000040", + "pred": "http://purl.obolibrary.org/obo/RO_0000057", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002068" }, { "obj": "http://purl.obolibrary.org/obo/BFO_0000040", @@ -1045,6 +1103,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/RO_0002577" }, + { + "obj": "http://purl.obolibrary.org/obo/BFO_0000050", + "pred": "subPropertyOf", + "sub": "http://purl.obolibrary.org/obo/RO_0002012" + }, { "obj": "http://purl.obolibrary.org/obo/BFO_0000050", "pred": "subPropertyOf", @@ -1223,7 +1286,7 @@ { "obj": "http://purl.obolibrary.org/obo/GO_0008150", "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/GO_0050896" + "sub": "http://purl.obolibrary.org/obo/GO_0007610" }, { "obj": "http://purl.obolibrary.org/obo/GO_0016740", @@ -1235,11 +1298,6 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/GO_0016301" }, - { - "obj": "http://purl.obolibrary.org/obo/GO_0050896", - "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/GO_0007610" - }, { "obj": "http://purl.obolibrary.org/obo/IAO_0000001", "pred": "is_a", @@ -1370,6 +1428,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/OMRSE_00000506" }, + { + "obj": "http://purl.obolibrary.org/obo/IAO_0000027", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002061" + }, { "obj": "http://purl.obolibrary.org/obo/IAO_0000028", "pred": "is_a", @@ -1435,11 +1498,6 @@ "pred": "http://purl.obolibrary.org/obo/OBI_0000299", "sub": "http://purl.obolibrary.org/obo/IAO_0000650" }, - { - "obj": "http://purl.obolibrary.org/obo/IAO_0000030", - "pred": "http://purl.obolibrary.org/obo/RO_0000057", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000192" - }, { "obj": "http://purl.obolibrary.org/obo/IAO_0000030", "pred": "http://purl.obolibrary.org/obo/RO_0000059", @@ -1543,17 +1601,17 @@ { "obj": "http://purl.obolibrary.org/obo/IAO_0000030", "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000197" + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000204" }, { "obj": "http://purl.obolibrary.org/obo/IAO_0000030", "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000204" + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000221" }, { "obj": "http://purl.obolibrary.org/obo/IAO_0000030", "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000221" + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002071" }, { "obj": "http://purl.obolibrary.org/obo/IAO_0000030", @@ -3115,6 +3173,11 @@ "pred": "http://purl.obolibrary.org/obo/BFO_0000054", "sub": "http://purl.obolibrary.org/obo/OMRSE_00000172" }, + { + "obj": "http://purl.obolibrary.org/obo/OGMS_0000097", + "pred": "http://purl.obolibrary.org/obo/RO_0002087", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000161" + }, { "obj": "http://purl.obolibrary.org/obo/OGMS_0000097", "pred": "is_a", @@ -3320,51 +3383,6 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/PCO_0000020" }, - { - "obj": "http://purl.obolibrary.org/obo/OMRSE_00000024", - "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/IAO_0020027" - }, - { - "obj": "http://purl.obolibrary.org/obo/OMRSE_00000024", - "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000002" - }, - { - "obj": "http://purl.obolibrary.org/obo/OMRSE_00000024", - "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000010" - }, - { - "obj": "http://purl.obolibrary.org/obo/OMRSE_00000024", - "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000025" - }, - { - "obj": "http://purl.obolibrary.org/obo/OMRSE_00000024", - "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000026" - }, - { - "obj": "http://purl.obolibrary.org/obo/OMRSE_00000024", - "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000038" - }, - { - "obj": "http://purl.obolibrary.org/obo/OMRSE_00000024", - "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000087" - }, - { - "obj": "http://purl.obolibrary.org/obo/OMRSE_00000024", - "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000092" - }, - { - "obj": "http://purl.obolibrary.org/obo/OMRSE_00000024", - "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000095" - }, { "obj": "http://purl.obolibrary.org/obo/OMRSE_00000025", "pred": "is_a", @@ -3410,6 +3428,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/OMRSE_00000051" }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00000048", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002072" + }, { "obj": "http://purl.obolibrary.org/obo/OMRSE_00000049", "pred": "is_a", @@ -3990,41 +4013,11 @@ "pred": "http://purl.obolibrary.org/obo/RO_0002350", "sub": "http://purl.obolibrary.org/obo/OMRSE_00000190" }, - { - "obj": "http://purl.obolibrary.org/obo/OMRSE_00000192", - "pred": "http://purl.obolibrary.org/obo/BFO_0000054", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000193" - }, - { - "obj": "http://purl.obolibrary.org/obo/OMRSE_00000192", - "pred": "http://purl.obolibrary.org/obo/BFO_0000054", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000194" - }, { "obj": "http://purl.obolibrary.org/obo/OMRSE_00000192", "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/OMRSE_00000196" }, - { - "obj": "http://purl.obolibrary.org/obo/OMRSE_00000192", - "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000198" - }, - { - "obj": "http://purl.obolibrary.org/obo/OMRSE_00000193", - "pred": "http://purl.obolibrary.org/obo/IAO_0000136", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000197" - }, - { - "obj": "http://purl.obolibrary.org/obo/OMRSE_00000194", - "pred": "http://purl.obolibrary.org/obo/IAO_0000136", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000197" - }, - { - "obj": "http://purl.obolibrary.org/obo/OMRSE_00000194", - "pred": "http://purl.obolibrary.org/obo/RO_0000053", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000195" - }, { "obj": "http://purl.obolibrary.org/obo/OMRSE_00000198", "pred": "is_a", @@ -4320,6 +4313,86 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/OMRSE_00002057" }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00002062", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002063" + }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00002064", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002065" + }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00002068", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000198" + }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00002068", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002070" + }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00002069", + "pred": "http://purl.obolibrary.org/obo/IAO_0000136", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002071" + }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00002069", + "pred": "http://purl.obolibrary.org/obo/RO_0000053", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000195" + }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00002072", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/IAO_0020027" + }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00002072", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000002" + }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00002072", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000010" + }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00002072", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000025" + }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00002072", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000026" + }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00002072", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000038" + }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00002072", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000077" + }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00002072", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000087" + }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00002072", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000092" + }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00002072", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000095" + }, { "obj": "http://purl.obolibrary.org/obo/OOSTT_00000074", "pred": "http://purl.obolibrary.org/obo/OBI_0000299", @@ -4865,6 +4938,11 @@ "pred": "subPropertyOf", "sub": "http://purl.obolibrary.org/obo/RO_0009501" }, + { + "obj": "http://purl.obolibrary.org/obo/RO_0002410", + "pred": "subPropertyOf", + "sub": "http://purl.obolibrary.org/obo/RO_0019000" + }, { "obj": "http://purl.obolibrary.org/obo/RO_0002411", "pred": "inverseOf", @@ -4900,6 +4978,11 @@ "pred": "subPropertyOf", "sub": "http://purl.obolibrary.org/obo/RO_0002578" }, + { + "obj": "http://purl.obolibrary.org/obo/RO_0002418", + "pred": "subPropertyOf", + "sub": "http://purl.obolibrary.org/obo/RO_0002012" + }, { "obj": "http://purl.obolibrary.org/obo/RO_0002418", "pred": "subPropertyOf", @@ -5135,6 +5218,16 @@ "pred": "subPropertyOf", "sub": "http://purl.obolibrary.org/obo/RO_0002448" }, + { + "obj": "http://purl.obolibrary.org/obo/RO_0019000", + "pred": "subPropertyOf", + "sub": "http://purl.obolibrary.org/obo/RO_0019001" + }, + { + "obj": "http://purl.obolibrary.org/obo/RO_0019000", + "pred": "subPropertyOf", + "sub": "http://purl.obolibrary.org/obo/RO_0019002" + }, { "obj": "http://purl.obolibrary.org/obo/UO_0000001", "pred": "http://purl.obolibrary.org/obo/IAO_0000039", @@ -5310,6 +5403,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/OMRSE_00000018" }, + { + "obj": "http://www.geneontology.org/formats/oboInOwl#ObsoleteClass", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000024" + }, { "obj": "http://www.geneontology.org/formats/oboInOwl#ObsoleteClass", "pred": "is_a", @@ -5395,6 +5493,26 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/OMRSE_00000168" }, + { + "obj": "http://www.geneontology.org/formats/oboInOwl#ObsoleteClass", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000192" + }, + { + "obj": "http://www.geneontology.org/formats/oboInOwl#ObsoleteClass", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000193" + }, + { + "obj": "http://www.geneontology.org/formats/oboInOwl#ObsoleteClass", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000194" + }, + { + "obj": "http://www.geneontology.org/formats/oboInOwl#ObsoleteClass", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000197" + }, { "obj": "http://www.geneontology.org/formats/oboInOwl#ObsoleteClass", "pred": "is_a", @@ -5985,11 +6103,11 @@ }, { "pred": "http://www.w3.org/2002/07/owl#versionInfo", - "val": "2021-08-30" + "val": "2022-04-06" } ], "subsets": [], - "version": "http://purl.obolibrary.org/obo/omrse/releases/2021-08-30/omrse-full.json", + "version": "http://purl.obolibrary.org/obo/omrse/releases/2022-04-06/omrse-full.json", "xrefs": [] }, "nodes": [ @@ -7858,7 +7976,11 @@ }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", - "val": "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" + "val": "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/" + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000116", + "val": "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", @@ -7959,6 +8081,10 @@ "pred": "http://purl.obolibrary.org/obo/IAO_0000116", "val": "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part." }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000116", + "val": "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/" + }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", "val": "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" @@ -19889,7 +20015,7 @@ }, { "id": "http://purl.obolibrary.org/obo/OMRSE_00000024", - "lbl": "role in human social processes", + "lbl": "obsolete role in human social processes", "meta": { "basicPropertyValues": [ { @@ -19907,7 +20033,8 @@ "definition": { "val": "A role inhering in an entity realized by social interactions in human society.", "xrefs": [] - } + }, + "deprecated": true }, "type": "CLASS" }, @@ -20461,7 +20588,7 @@ } ], "definition": { - "val": "A healthcare provider role that inheres in an organization and is realized by providing inpatient and outpatient care.", + "val": "A healthcare provider role that inheres in an organization and is realized by providing inpatient care.", "xrefs": [] } }, @@ -21837,6 +21964,23 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/OMRSE_00000161", + "lbl": "leaving a health care facility after receiving care", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "William R. Hogan" + } + ], + "definition": { + "val": "A process (1) where the active participant, who at the beginning of the process is located in a healthcare facility, exits the facility and no longer stands in a \"located in\" relationship to the facility and (2) is immediately preceded by a healthcare encounter in which the active participant also participated.", + "xrefs": [] + } + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/OMRSE_00000162", "lbl": "obsolete medical advice", @@ -22098,7 +22242,7 @@ }, { "id": "http://purl.obolibrary.org/obo/OMRSE_00000192", - "lbl": "communication", + "lbl": "obsolete communication", "meta": { "basicPropertyValues": [ { @@ -22124,13 +22268,14 @@ "definition": { "val": "A process in which some participant shares some information content entity about some state of that participant with some other participant.", "xrefs": [] - } + }, + "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/OMRSE_00000193", - "lbl": "linguistic competence", + "lbl": "obsolete linguistic competence", "meta": { "basicPropertyValues": [ { @@ -22153,13 +22298,14 @@ "definition": { "val": "A disposition inhering in a material entity that, if realized, is realized by that material entity’s communicating via some linguistic concretization.", "xrefs": [] - } + }, + "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/OMRSE_00000194", - "lbl": "language", + "lbl": "obsolete language", "meta": { "basicPropertyValues": [ { @@ -22182,7 +22328,8 @@ "definition": { "val": "A disposition inhering in a linguistic community that (i) is a maximal aggregate of communicatively compatible linguistic competences, and (ii) if realized, is realized by any and all realizations of those linguistic competences.", "xrefs": [] - } + }, + "deprecated": true }, "type": "CLASS" }, @@ -22217,7 +22364,7 @@ }, { "id": "http://purl.obolibrary.org/obo/OMRSE_00000196", - "lbl": "expression of preferred language", + "lbl": "obsolete expression of preferred language", "meta": { "basicPropertyValues": [ { @@ -22240,13 +22387,14 @@ "definition": { "val": "A communication in which some participant states a preference for some communicative process to be in a certain language, and that has a concretization of a preferred language information content entity as its specified output.", "xrefs": [] - } + }, + "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/OMRSE_00000197", - "lbl": "preferred language information content entity", + "lbl": "obsolete preferred language information content entity", "meta": { "basicPropertyValues": [ { @@ -22269,7 +22417,8 @@ "definition": { "val": "An information content entity that (i) is about some person, some language, and some linguistic competence; and (ii) conveys the language with which that person prefers to communicate within some given context.", "xrefs": [] - } + }, + "deprecated": true }, "type": "CLASS" }, @@ -23721,7 +23870,7 @@ "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000111", - "val": "completing a program of eduction" + "val": "completing a program of education" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000117", @@ -24100,7 +24249,64 @@ "This data item in a typical attribute-value system such as table, XML, JSON takes values like \"secondary education\", \"Associate Degree\", \"Bachelor Degree\", \"High School\", and so on." ], "definition": { - "val": "A socio-economic data item that is about a person and their completion of an education program (and its type), where that education progam is the last one in a sequence (of education programs) that the person has completed, where each education program completed except the last one is a pre-requisite to the education program completed after it.", + "val": "A socio-economic data item that is about a person and their completion of an education program (and its type), where that education program is the last one in a sequence (of education programs) that the person has completed, where each education program completed except the last one is a pre-requisite to the education program completed after it.", + "xrefs": [] + } + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/OMRSE_00002046", + "lbl": "vocational education program", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000111", + "val": "vocational education plan specification" + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "William R. Hogan" + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000119", + "val": "http://uis.unesco.org/sites/default/files/documents/international-standard-classification-of-education-isced-2011-en.pdf" + } + ], + "comments": [ + "Vocational education programs are designed for learners to acquire the knowledge, skills and competencies specific to a particular occupation, trade, or class of occupations or trades. Such programs may have work-based components (e.g. apprenticeships, dual-system education programmes). Successful completion of such programs leads to labor market-relevant, vocational qualifications acknowledged as occupationally-oriented by the relevant national authorities and/or the labor market." + ], + "definition": { + "val": "An educational plan specification that has a vocational objective specification as part.", + "xrefs": [] + } + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/OMRSE_00002047", + "lbl": "kindergarten education program", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000111", + "val": "kindergarten education plan specification" + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "William R. Hogan" + }, + { + "pred": "http://purl.org/dc/elements/1.1/creator", + "val": "http://orcid.org/0000-0002-9881-1017" + }, + { + "pred": "http://purl.org/dc/elements/1.1/date", + "val": "2020-09-02T12:38:43Z" + } + ], + "definition": { + "val": "A primary education plan specification that specifies the competencies and information content entities that should be acquired by students in the first year of primary education in the United States.", "xrefs": [] } }, @@ -24536,196 +24742,545 @@ "type": "CLASS" }, { - "id": "http://purl.obolibrary.org/obo/OOSTT_00000030", - "lbl": "OOSTT user-centered description", + "id": "http://purl.obolibrary.org/obo/OMRSE_00002061", + "lbl": "monetary personal income data item", "meta": { "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000112", + "val": "Examples of monetary forms of payment include: wages, salary, or tips; interest generated by capital; dividends earned; lottery, game, or contest monetary winnings; alimony; royalties; trusts; pensions; receipt of rental payments; unemployment payments; social security payments; worker's compensation; social security payments; or profit from entrepreneurial activities." + }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000117", - "val": "Mathias Brochhausen" + "val": "Matthew Diller" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Chris Stoeckert" } - ] + ], + "comments": [ + "We use the phrase ‘some person’ in the definition because this class can be about an individual's or a household's earnings. Similarly, we use 'personal income' in the label because the term is typically restricted to individuals and households. This class is also restricted to being about monetary forms of income." + ], + "definition": { + "val": "A data item that is about the sum of earnings for some person(s) from various forms of payment or profits.", + "xrefs": [] + } }, - "type": "PROPERTY" + "type": "CLASS" }, { - "id": "http://purl.obolibrary.org/obo/OOSTT_00000074", - "lbl": "academic degree", + "id": "http://purl.obolibrary.org/obo/OMRSE_00002062", + "lbl": "concretization-utilization process", "meta": { "basicPropertyValues": [ { - "pred": "http://purl.obolibrary.org/obo/IAO_0000117", - "val": "John Judkins" + "pred": "http://purl.obolibrary.org/obo/IAO_0000112", + "val": "Taking notes on a meeting is an example in which the concretization relation is newly established, since the SDCs that concretize the GDCs come into existence as the notes are written. In contrast, using slides prepared by someone else in order to convey information during a presentation is a case of using a concretization in which the performer neither brings the concretizing SDCs into existence nor is responsible for their standing in the concretization relation to the relevant GDCs. A nonlinguistic example is drawing the logo of one’s favorite brand, in which one creates a pattern that concretizes a GDC that is also concretized by patterns on products of the brand." }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000117", - "val": "Mathias Brochhausen" + "val": "S. Clint Dowland" }, { - "pred": "http://purl.obolibrary.org/obo/OOSTT_00000030", - "val": "Recognized degree awarded after successful completion of a college or post-graduate porgram." + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Matthew Diller" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Sarah Bost" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "William R. Hogan" } ], + "comments": [ + "Instances include any process that brings it about that some specifically dependent continuant begins to stand in a concretization relation to some generically dependent continuant, as well as any process in which someone makes use of a pre-established concretization relation. To be clear, instances do not include using concretizations of words or letters for purposes that do not make use of the concretization relations in which they stand (for example, hanging up a sign in a foreign language as a decoration because one likes the colors, despite having no idea what the sign says).", + "Instances include, but are not limited to, processes that bring about cognitive concretizations." + ], "definition": { - "val": "An information content entity that is the specified outcome of and documents the sucessful completion of a tertiary education program.", + "val": "Process in which some participant utilizes some specifically dependent continuant as a concretization of some generically dependent continuant.", "xrefs": [] } }, "type": "CLASS" }, { - "id": "http://purl.obolibrary.org/obo/OOSTT_00000081", - "lbl": "associate degree", + "id": "http://purl.obolibrary.org/obo/OMRSE_00002063", + "lbl": "linguistic concretization-utilization process", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000117", - "val": "John Judkins" + "val": "S. Clint Dowland" }, { - "pred": "http://purl.obolibrary.org/obo/IAO_0000117", - "val": "Mathias Brochhausen" + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Matthew Diller" }, { - "pred": "http://purl.obolibrary.org/obo/IAO_0000119", - "val": "https://en.wikipedia.org/w/index.php?title=Associate_degree&oldid=723897149" + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Sarah Dowland" }, { - "pred": "http://purl.obolibrary.org/obo/OOSTT_00000030", - "val": "Recognition awarded after completion of a specific curriculum from an accredited tertiary education provider that falls between high school and bachelor's degree program." + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "William R. Hogan" } ], "definition": { - "val": "An academic degree awarded by colleges and universities upon completion of a program of study lasting two years.", + "val": "A concretization-utilization process in which the utilized specifically dependent continuant concretizes the generically dependent through use of some language.", "xrefs": [] } }, "type": "CLASS" }, { - "id": "http://purl.obolibrary.org/obo/OOSTT_00000082", - "lbl": "master's degree", + "id": "http://purl.obolibrary.org/obo/OMRSE_00002064", + "lbl": "concretization-interpretation process", "meta": { "basicPropertyValues": [ { - "pred": "http://purl.obolibrary.org/obo/IAO_0000117", - "val": "John Judkins" + "pred": "http://purl.obolibrary.org/obo/IAO_0000112", + "val": "For example, reading a text message that says, “It is raining outside,” and inferring that the words on the screen are meant to convey information about the weather. The pattern on the screen that corresponds to the words is the SDC, and the ICE about the rain is the GDC. Or, hearing your spouse say, “Can you come to the kitchen?” and then knowing that your spouse wants you to come to the kitchen. You have interpreted the patterns of the sound as concretizing a GDC about what your spouse wants. Or, seeing a drawing of a basketball player and inferring—perhaps incorrectly—that it is of Michael Jordan." }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000117", - "val": "Mathias Brochhausen" + "val": "S. Clint Dowland" }, { - "pred": "http://purl.obolibrary.org/obo/IAO_0000119", - "val": "https://en.wikipedia.org/w/index.php?title=Master%27s_degree&oldid=726036185" + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Matthew Diller" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Sarah Bost" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "William R. Hogan" } ], + "comments": [ + "The interpretation need not be accurate. It may even be the case that the specifically dependent continuant has not previously concretized anything." + ], "definition": { - "val": "An academic degree awarded by universities upon completion of a course of study demonstrating a mastery or high-order overview of a specific field of study or area of professional practice.[1] Within the area studied, graduates are posited to possess advanced knowledge of a specialized body of theoretical and applied topics; high order skills in analysis, critical evaluation, or professional application; and the ability to solve complex problems and think rigorously and independently.", + "val": "Process in which some participant infers that some particular specifically dependent continuant stands in the concretization relation to some particular generically dependent continuant.", "xrefs": [] } }, "type": "CLASS" }, { - "id": "http://purl.obolibrary.org/obo/OOSTT_00000083", - "lbl": "bachelor's degree", + "id": "http://purl.obolibrary.org/obo/OMRSE_00002065", + "lbl": "linguistic concretization-interpretation process", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000117", - "val": "John Judkins" + "val": "S. Clint Dowland" }, { - "pred": "http://purl.obolibrary.org/obo/IAO_0000117", - "val": "Mathias Brochhausen" + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Matthew Diller" }, { - "pred": "http://purl.obolibrary.org/obo/IAO_0000119", - "val": "https://en.wikipedia.org/w/index.php?title=Bachelor%27s_degree&oldid=725713923" + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Sarah Bost" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "William R. Hogan" } ], "definition": { - "val": "An academic degree awarded by colleges and universities upon completion of a course of study lasting three to seven years.", + "val": "A concretization-interpretation process in which the specifically dependent continuant is inferred to concretize the generically dependent continuant in a way that makes use of some language.", "xrefs": [] } }, "type": "CLASS" }, { - "id": "http://purl.obolibrary.org/obo/OOSTT_00000084", - "lbl": "bachelor's of nursing degree", + "id": "http://purl.obolibrary.org/obo/OMRSE_00002066", + "lbl": "linguistic competence", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000117", - "val": "John Judkins" + "val": "S. Clint Dowland" }, { - "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "pred": "http://purl.org/dc/elements/1.1/contributor", "val": "Mathias Brochhausen" }, { - "pred": "http://purl.obolibrary.org/obo/IAO_0000119", - "val": "https://en.wikipedia.org/w/index.php?title=Bachelor_of_Science_in_Nursing&oldid=725962822" + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Matthew Diller" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "William R. Hogan" } ], + "comments": [ + "When realized in a concretization-utilization process, the only relevant concretization may in some cases be a cognitive one, but that suffices to realize a linguistic competence. For example, suppose one begins to write a letter, planning out the words ahead of time, but is interrupted before beginning to write and never resumes. During the process of planning out the words and what one intends to communicate, one is already concretizing words cognitively, as well as considering which combinations of words one can use to concretize additional generically dependent continuants. In doing so, one performs processes that realize one's linguistic competence, without producing any concretizations other than those cognitive ones." + ], "definition": { - "val": "An academic degree in the science and principles of nursing, granted by an accredited tertiary education provider after the successful completion of a bachelor's of nursing program.", + "val": "A disposition that inheres in some material entity and is such that that, if realized, it is realized by either some linguistic concretization-utilization process or some linguistic concretization-interpretation process.", "xrefs": [] } }, "type": "CLASS" }, { - "id": "http://purl.obolibrary.org/obo/OOSTT_00000086", - "lbl": "master's in the science of nursing degree", + "id": "http://purl.obolibrary.org/obo/OMRSE_00002068", + "lbl": "communication", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000117", - "val": "John Judkins" + "val": "S. Clint Dowland" }, { - "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "pred": "http://purl.org/dc/elements/1.1/contributor", "val": "Mathias Brochhausen" }, { - "pred": "http://purl.obolibrary.org/obo/OOSTT_00000030", - "val": "An advanced academic degree in the principles and practices of nursing, with a focus on administration, education, or advanced nursing practice, granted by an accredited college or university after the successful completion of a master's of nursing program." + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Matthew Diller" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "William R. Hogan" } ], + "comments": [ + "For example, if you tell someone, “It is raining,” you produce sounds that have patterns that concretize information about the weather. Your utilization of that concretization is part of the communication. When the other person hears you, they interpret those patterns to concretize something, which may or may not be the same as what you intended to convey. In other words, they interpret the sounds you produce to have meanings associated with them, and that interpretation process is another part of the communication. If a process does not have a part of each type, it is not a communication.", + "The interpretation need not correspond exactly to what was intended by the other participant.", + "The term 'participant' in the definition need not refer to a human agent." + ], "definition": { - "val": "An academic degree in the science and principles of nursing, granted by an accredited tertiary education provider after the successful completion of a master's of nursing program.", + "val": "A process in which some participant shares some generically dependent continuant with some other participant. The former utilizes some specifically dependent continuant that concretizes the generically dependent continuant intended to be shared, while the latter interprets that specifically dependent continuant to concretize some particular generically dependent continuant, aiming to accurately infer the other participant’s intent.", "xrefs": [] } }, "type": "CLASS" }, { - "id": "http://purl.obolibrary.org/obo/PATO_0000051", - "lbl": "morphology", + "id": "http://purl.obolibrary.org/obo/OMRSE_00002069", + "lbl": "language", "meta": { "basicPropertyValues": [ { - "pred": "http://purl.obolibrary.org/obo/IAO_0000111", - "val": "morphology" + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "William R. Hogan" }, { - "pred": "http://purl.obolibrary.org/obo/IAO_0000412", - "val": "http://purl.obolibrary.org/obo/pato.owl" + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Mathias Brochhausen" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Matthew Diller" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "S. Clint Dowland" } ], "definition": { - "val": "A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure.", + "val": "A disposition that (i) is an aggregate of linguistic competences, considered as forming a distinct group on the basis of perceived common characteristics, such as mutual intelligibility among their bearers, in addition to historical or cultural factors; (ii) if realized, is realized in any and all realizations of those linguistic competences; and (iii) inheres in a linguistic community.", "xrefs": [] } }, "type": "CLASS" }, { - "id": "http://purl.obolibrary.org/obo/PATO_0000122", - "lbl": "length", + "id": "http://purl.obolibrary.org/obo/OMRSE_00002070", + "lbl": "disclosure of preferred language", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "S. Clint Dowland" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Mathias Brochhausen" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Matthew Diller" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "William R. Hogan" + } + ], + "definition": { + "val": "A communication in which some participant states a preference for some communicative process to be in a certain language, via some concretization of some preferred language information content entity.", + "xrefs": [] + } + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/OMRSE_00002071", + "lbl": "preferred language information content entity", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "Mathias Brochhausen" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Matthew Diller" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "S. Clint Dowland" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "William R. Hogan" + } + ], + "definition": { + "val": "An information content entity that is about some person and some language, and that conveys the language with which that person prefers to communicate within some given context.", + "xrefs": [] + } + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/OMRSE_00002072", + "lbl": "role in human social processes", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "Matthew Diller" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Mathias Brochhausen" + } + ], + "comments": [ + "Previous definition: A role played by an entity in human social processes." + ], + "definition": { + "val": "A role inhering in an entity realized by social interactions in human society.", + "xrefs": [] + } + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/OOSTT_00000030", + "lbl": "OOSTT user-centered description", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "Mathias Brochhausen" + } + ] + }, + "type": "PROPERTY" + }, + { + "id": "http://purl.obolibrary.org/obo/OOSTT_00000074", + "lbl": "academic degree", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "John Judkins" + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "Mathias Brochhausen" + }, + { + "pred": "http://purl.obolibrary.org/obo/OOSTT_00000030", + "val": "Recognized degree awarded after successful completion of a college or post-graduate porgram." + } + ], + "definition": { + "val": "An information content entity that is the specified outcome of and documents the sucessful completion of a tertiary education program.", + "xrefs": [] + } + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/OOSTT_00000081", + "lbl": "associate degree", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "John Judkins" + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "Mathias Brochhausen" + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000119", + "val": "https://en.wikipedia.org/w/index.php?title=Associate_degree&oldid=723897149" + }, + { + "pred": "http://purl.obolibrary.org/obo/OOSTT_00000030", + "val": "Recognition awarded after completion of a specific curriculum from an accredited tertiary education provider that falls between high school and bachelor's degree program." + } + ], + "definition": { + "val": "An academic degree awarded by colleges and universities upon completion of a program of study lasting two years.", + "xrefs": [] + } + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/OOSTT_00000082", + "lbl": "master's degree", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "John Judkins" + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "Mathias Brochhausen" + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000119", + "val": "https://en.wikipedia.org/w/index.php?title=Master%27s_degree&oldid=726036185" + } + ], + "definition": { + "val": "An academic degree awarded by universities upon completion of a course of study demonstrating a mastery or high-order overview of a specific field of study or area of professional practice.[1] Within the area studied, graduates are posited to possess advanced knowledge of a specialized body of theoretical and applied topics; high order skills in analysis, critical evaluation, or professional application; and the ability to solve complex problems and think rigorously and independently.", + "xrefs": [] + } + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/OOSTT_00000083", + "lbl": "bachelor's degree", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "John Judkins" + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "Mathias Brochhausen" + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000119", + "val": "https://en.wikipedia.org/w/index.php?title=Bachelor%27s_degree&oldid=725713923" + } + ], + "definition": { + "val": "An academic degree awarded by colleges and universities upon completion of a course of study lasting three to seven years.", + "xrefs": [] + } + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/OOSTT_00000084", + "lbl": "bachelor's of nursing degree", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "John Judkins" + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "Mathias Brochhausen" + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000119", + "val": "https://en.wikipedia.org/w/index.php?title=Bachelor_of_Science_in_Nursing&oldid=725962822" + } + ], + "definition": { + "val": "An academic degree in the science and principles of nursing, granted by an accredited tertiary education provider after the successful completion of a bachelor's of nursing program.", + "xrefs": [] + } + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/OOSTT_00000086", + "lbl": "master's in the science of nursing degree", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "John Judkins" + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "Mathias Brochhausen" + }, + { + "pred": "http://purl.obolibrary.org/obo/OOSTT_00000030", + "val": "An advanced academic degree in the principles and practices of nursing, with a focus on administration, education, or advanced nursing practice, granted by an accredited college or university after the successful completion of a master's of nursing program." + } + ], + "definition": { + "val": "An academic degree in the science and principles of nursing, granted by an accredited tertiary education provider after the successful completion of a master's of nursing program.", + "xrefs": [] + } + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/PATO_0000001", + "lbl": "quality", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000589", + "val": "quality (PATO)" + } + ] + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/PATO_0000051", + "lbl": "morphology", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000111", + "val": "morphology" + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000412", + "val": "http://purl.obolibrary.org/obo/pato.owl" + } + ], + "definition": { + "val": "A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure.", + "xrefs": [] + } + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/PATO_0000122", + "lbl": "length", "meta": { "basicPropertyValues": [ { @@ -24837,7 +25392,7 @@ }, { "id": "http://purl.obolibrary.org/obo/RO_0000052", - "lbl": "inheres in", + "lbl": "characteristic of", "meta": { "basicPropertyValues": [ { @@ -24848,10 +25403,18 @@ "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "this fragility inheres in this vase" }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000112", + "val": "this fragility is a characteristic of this vase" + }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "this red color inheres in this apple" }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000112", + "val": "this red color is a characteristic of this apple" + }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", "val": "A dependent inheres in its bearer at all times for which the dependent exists." @@ -24865,6 +25428,9 @@ "val": "http://purl.obolibrary.org/obo/RO_0001901" } ], + "comments": [ + "Note that this relation was previously called \"inheres in\", but was changed to be called \"characteristic of\" because BFO2 uses \"inheres in\" in a more restricted fashion. This relation differs from BFO2:inheres_in in two respects: (1) it does not impose a range constraint, and thus it allows qualities of processes, as well as of information entities, whereas BFO2 restricts inheres_in to only apply to independent continuants (2) it is declared functional, i.e. something can only be a characteristic of one thing." + ], "definition": { "val": "a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence", "xrefs": [] @@ -24907,7 +25473,7 @@ } ], "definition": { - "val": "a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence", + "val": "Inverse of characteristic_of", "xrefs": [] } }, @@ -25067,6 +25633,9 @@ "val": "is function of" } ], + "comments": [ + "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020." + ], "definition": { "val": "a relation between a function and an independent continuant (the bearer), in which the function specifically depends on the bearer for its existence", "xrefs": [] @@ -25096,6 +25665,9 @@ "val": "quality_of" } ], + "comments": [ + "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020." + ], "definition": { "val": "a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence", "xrefs": [] @@ -25125,6 +25697,9 @@ "val": "role_of" } ], + "comments": [ + "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020." + ], "definition": { "val": "a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence", "xrefs": [] @@ -25218,6 +25793,23 @@ }, "type": "PROPERTY" }, + { + "id": "http://purl.obolibrary.org/obo/RO_0000092", + "lbl": "disposition of", + "meta": { + "comments": [ + "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020." + ], + "definition": { + "val": "inverse of has disposition", + "xrefs": [] + }, + "subsets": [ + "http://purl.obolibrary.org/obo/RO_0002259" + ] + }, + "type": "PROPERTY" + }, { "id": "http://purl.obolibrary.org/obo/RO_0001000", "lbl": "derives from", @@ -25459,6 +26051,17 @@ }, "type": "PROPERTY" }, + { + "id": "http://purl.obolibrary.org/obo/RO_0002012", + "lbl": "occurrent part of", + "meta": { + "definition": { + "val": "A part of relation that applies only between occurrents.", + "xrefs": [] + } + }, + "type": "PROPERTY" + }, { "id": "http://purl.obolibrary.org/obo/RO_0002013", "lbl": "has regulatory component activity", @@ -25891,7 +26494,6 @@ }, "subsets": [ "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension", - "http://purl.obolibrary.org/obo/valid_for_go_gp2term", "http://purl.obolibrary.org/obo/valid_for_go_ontology", "http://purl.obolibrary.org/obo/valid_for_gocam" ] @@ -25926,7 +26528,6 @@ }, "subsets": [ "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension", - "http://purl.obolibrary.org/obo/valid_for_go_gp2term", "http://purl.obolibrary.org/obo/valid_for_go_ontology", "http://purl.obolibrary.org/obo/valid_for_gocam" ] @@ -25961,7 +26562,6 @@ }, "subsets": [ "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension", - "http://purl.obolibrary.org/obo/valid_for_go_gp2term", "http://purl.obolibrary.org/obo/valid_for_go_ontology", "http://purl.obolibrary.org/obo/valid_for_gocam" ] @@ -26027,7 +26627,7 @@ }, { "pred": "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val": "https://github.com/oborel/obo-relations/wiki/ROGuide#defining-property-chains-involving-reflexivity" + "val": "http://purl.obolibrary.org/obo/ro/docs/reflexivity/" } ], "definition": { @@ -26049,6 +26649,10 @@ { "pred": "http://purl.obolibrary.org/obo/IAO_0000118", "val": "agent in" + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0100001", + "val": "http://purl.obolibrary.org/obo/RO_0002608" } ], "comments": [ @@ -26090,6 +26694,10 @@ { "pred": "http://purl.obolibrary.org/obo/IAO_0000412", "val": "http://purl.obolibrary.org/obo/ro.owl" + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0100001", + "val": "http://purl.obolibrary.org/obo/RO_0002500" } ], "definition": { @@ -26438,17 +27046,21 @@ }, { "id": "http://purl.obolibrary.org/obo/RO_0002314", - "lbl": "inheres in part of", + "lbl": "characteristic of part of", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", - "val": "Because part_of is transitive, inheres in is a sub-relation of inheres in part of" + "val": "Because part_of is transitive, inheres in is a sub-relation of characteristic of part of" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000117", "val": "Chris Mungall" }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000118", + "val": "inheres in part of" + }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000119", "val": "http://www.ncbi.nlm.nih.gov/pubmed/20064205" @@ -26459,11 +27071,11 @@ }, { "pred": "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val": "https://github.com/oborel/obo-relations/wiki/ROGuide#defining-property-chains-involving-reflexivity" + "val": "http://purl.obolibrary.org/obo/ro/docs/reflexivity/" } ], "definition": { - "val": "q inheres in part of w if and only if there exists some p such that q inheres in p and p part of w.", + "val": "q characteristic of part of w if and only if there exists some p such that q inheres in p and p part of w.", "xrefs": [] } }, @@ -26530,10 +27142,6 @@ { "pred": "http://purl.obolibrary.org/obo/IAO_0000232", "val": "This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized." - }, - { - "pred": "http://purl.obolibrary.org/obo/IAO_0000232", - "val": "This relation is currently used experimentally by the Gene Ontology Consortium. It may not be stable and may be obsoleted at some future time." } ], "subsets": [ @@ -27090,11 +27698,11 @@ }, { "pred": "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val": "http://purl.obolibrary.org/obo/MI_0914" + "val": "http://purl.obolibrary.org/obo/ro/docs/interaction-relations/" }, { - "pred": "http://xmlns.com/foaf/0.1/page", - "val": "https://github.com/oborel/obo-relations/wiki/InteractionRelations" + "pred": "http://www.w3.org/2004/02/skos/core#closeMatch", + "val": "http://purl.obolibrary.org/obo/MI_0914" } ], "definition": { @@ -27136,7 +27744,7 @@ "val": "http://purl.obolibrary.org/obo/ECO_0000353" }, { - "pred": "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "pred": "http://www.w3.org/2004/02/skos/core#closeMatch", "val": "http://purl.obolibrary.org/obo/MI_0915" } ], @@ -27429,8 +28037,8 @@ "val": "http://ontologydesignpatterns.org/wiki/Submissions:N-Ary_Relation_Pattern_%28OWL_2%29" }, { - "pred": "http://xmlns.com/foaf/0.1/page", - "val": "https://github.com/oborel/obo-relations/wiki/InteractionRelations" + "pred": "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val": "http://purl.obolibrary.org/obo/ro/docs/interaction-relations/" } ] }, @@ -28085,6 +28693,94 @@ }, "type": "PROPERTY" }, + { + "id": "http://purl.obolibrary.org/obo/RO_0017001", + "lbl": "utilizes", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000112", + "val": "A diagnostic testing device utilizes a specimen." + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "Asiyah Lin" + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "https://orcid.org/0000-0001-9625-1899 Bill Duncan" + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000232", + "val": "A diagnostic testing device utilizes a specimen means that the diagnostic testing device is capable of an assay, and this assay a specimen as its input." + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000232", + "val": "See github ticket https://github.com/oborel/obo-relations/issues/497" + }, + { + "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val": "2021-11-08" + } + ], + "definition": { + "val": "X utilizes Y means X and Y are material entities, and X is capable of some process P that has input Y.", + "xrefs": [] + } + }, + "type": "PROPERTY" + }, + { + "id": "http://purl.obolibrary.org/obo/RO_0019000", + "lbl": "regulates characteristic", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0002-8688-6599" + } + ], + "definition": { + "val": "A relationship that holds between a process and a characteristic in which process (P) regulates characteristic (C) iff: P results in the existence of C OR affects the intensity or magnitude of C.", + "xrefs": [] + } + }, + "type": "PROPERTY" + }, + { + "id": "http://purl.obolibrary.org/obo/RO_0019001", + "lbl": "positively regulates characteristic", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0002-8688-6599" + } + ], + "definition": { + "val": "A relationship that holds between a process and a characteristic in which process (P) positively regulates characteristic (C) iff: P results in an increase in the intensity or magnitude of C.", + "xrefs": [] + } + }, + "type": "PROPERTY" + }, + { + "id": "http://purl.obolibrary.org/obo/RO_0019002", + "lbl": "negatively regulates characteristic", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0002-8688-6599" + } + ], + "definition": { + "val": "A relationship that holds between a process and a characteristic in which process (P) negatively regulates characteristic (C) iff: P results in a decrease in the intensity or magnitude of C.", + "xrefs": [] + } + }, + "type": "PROPERTY" + }, { "id": "http://purl.obolibrary.org/obo/UO_0000001", "lbl": "length unit", @@ -28191,11 +28887,11 @@ "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasDefinition", - "val": "_:genid2147485106" + "val": "_:genid2147485172" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasDefinition", - "val": "_:genid2147485107" + "val": "_:genid2147485173" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -28258,11 +28954,6 @@ "lbl": "transferase activity, transferring phosphorus-containing groups", "type": "CLASS" }, - { - "id": "http://purl.obolibrary.org/obo/GO_0050896", - "lbl": "response to stimulus", - "type": "CLASS" - }, { "id": "http://purl.obolibrary.org/obo/IAO_0000004", "lbl": "has measurement value", @@ -28513,11 +29204,6 @@ "lbl": "acute care encounter", "type": "CLASS" }, - { - "id": "http://purl.obolibrary.org/obo/OMRSE_00000161", - "lbl": "leaving a health care facility after receiving care", - "type": "CLASS" - }, { "id": "http://purl.obolibrary.org/obo/OMRSE_00000164", "lbl": "home health care organization", @@ -28618,11 +29304,6 @@ "lbl": "socio-economic data item", "type": "CLASS" }, - { - "id": "http://purl.obolibrary.org/obo/RO_0000092", - "lbl": "disposition of", - "type": "PROPERTY" - }, { "id": "http://www.geneontology.org/formats/oboInOwl#ObsoleteClass", "lbl": "Obsolete Class", @@ -28632,66 +29313,6 @@ "id": "http://www.w3.org/2000/01/rdf-schema#label", "lbl": "label", "type": "PROPERTY" - }, - { - "id": "http://purl.obolibrary.org/obo/OMRSE_00002046", - "meta": { - "basicPropertyValues": [ - { - "pred": "http://purl.obolibrary.org/obo/IAO_0000111", - "val": "vocational education plan specification" - }, - { - "pred": "http://purl.obolibrary.org/obo/IAO_0000117", - "val": "William R. Hogan" - }, - { - "pred": "http://purl.obolibrary.org/obo/IAO_0000119", - "val": "http://uis.unesco.org/sites/default/files/documents/international-standard-classification-of-education-isced-2011-en.pdf" - } - ], - "comments": [ - "Vocational education programs are designed for learners to acquire the knowledge, skills and competencies specific to a particular occupation, trade, or class of occupations or trades. Such programs may have work-based components (e.g. apprenticeships, dual-system education programmes). Successful completion of such programs leads to labor market-relevant, vocational qualifications acknowledged as occupationally-oriented by the relevant national authorities and/or the labor market.", - "vocational education program" - ], - "definition": { - "val": "An educational plan specification that has a vocational objective specification as part.", - "xrefs": [] - } - }, - "type": "CLASS" - }, - { - "id": "http://purl.obolibrary.org/obo/OMRSE_00002047", - "meta": { - "basicPropertyValues": [ - { - "pred": "http://purl.obolibrary.org/obo/IAO_0000111", - "val": "kindergarten education plan specification" - }, - { - "pred": "http://purl.obolibrary.org/obo/IAO_0000117", - "val": "William R. Hogan" - }, - { - "pred": "http://purl.obolibrary.org/obo/IAO_0000117", - "val": "kindergarten education program" - }, - { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0002-9881-1017" - }, - { - "pred": "http://purl.org/dc/elements/1.1/date", - "val": "2020-09-02T12:38:43Z" - } - ], - "definition": { - "val": "A primary education plan specification that specifies the competencies and information content entities that should be acquired by students in the first year of primary education in the United States.", - "xrefs": [] - } - }, - "type": "CLASS" } ], "propertyChainAxioms": [ @@ -28928,6 +29549,13 @@ ], "predicateId": "http://purl.obolibrary.org/obo/RO_0002428" }, + { + "chainPredicateIds": [ + "http://purl.obolibrary.org/obo/RO_0002211", + "http://purl.obolibrary.org/obo/RO_0019000" + ], + "predicateId": "http://purl.obolibrary.org/obo/RO_0019000" + }, { "chainPredicateIds": [ "http://purl.obolibrary.org/obo/RO_0002212", @@ -28963,6 +29591,13 @@ ], "predicateId": "http://purl.obolibrary.org/obo/RO_0002430" }, + { + "chainPredicateIds": [ + "http://purl.obolibrary.org/obo/RO_0002212", + "http://purl.obolibrary.org/obo/RO_0019001" + ], + "predicateId": "http://purl.obolibrary.org/obo/RO_0019002" + }, { "chainPredicateIds": [ "http://purl.obolibrary.org/obo/RO_0002213", @@ -28991,6 +29626,27 @@ ], "predicateId": "http://purl.obolibrary.org/obo/RO_0002429" }, + { + "chainPredicateIds": [ + "http://purl.obolibrary.org/obo/RO_0002213", + "http://purl.obolibrary.org/obo/RO_0019001" + ], + "predicateId": "http://purl.obolibrary.org/obo/RO_0019001" + }, + { + "chainPredicateIds": [ + "http://purl.obolibrary.org/obo/RO_0002213", + "http://purl.obolibrary.org/obo/RO_0019002" + ], + "predicateId": "http://purl.obolibrary.org/obo/RO_0019002" + }, + { + "chainPredicateIds": [ + "http://purl.obolibrary.org/obo/RO_0002215", + "http://purl.obolibrary.org/obo/RO_0002233" + ], + "predicateId": "http://purl.obolibrary.org/obo/RO_0017001" + }, { "chainPredicateIds": [ "http://purl.obolibrary.org/obo/RO_0002224", diff --git a/omrse-full.obo b/omrse-full.obo index a0612a9..0c4e37c 100644 --- a/omrse-full.obo +++ b/omrse-full.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: omrse/releases/2021-08-30/omrse-full.owl +data-version: omrse/releases/2022-04-06/omrse-full.owl subsetdef: attribute_slim "" subsetdef: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension "" subsetdef: http://purl.obolibrary.org/obo/valid_for_go_gp2term "" @@ -17,7 +17,7 @@ property_value: http://purl.org/dc/elements/1.1/creator "Swetha Garimalla" xsd:s property_value: http://purl.org/dc/elements/1.1/creator "William Hogan" xsd:string property_value: http://purl.org/dc/terms/license https://creativecommons.org/licenses/by/4.0/ xsd:string property_value: owl:versionInfo "2020-10-27" xsd:string -property_value: owl:versionInfo "2021-08-30" xsd:string +property_value: owl:versionInfo "2022-04-06" xsd:string name: The Ontology of Medically Related Social Entities [Term] @@ -336,6 +336,7 @@ property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl id: BFO:0000019 name: quality is_a: BFO:0000020 ! specifically dependent continuant +relationship: BFO:0000050 BFO:0000019 ! part of quality property_value: BFO:0000179 "quality" xsd:string property_value: BFO:0000180 "Quality" xsd:string property_value: IAO:0000112 "the ambient temperature of this portion of air" xsd:string @@ -778,7 +779,7 @@ name: behavior def: "The internally coordinated responses (actions or inactions) of animals (individuals or groups) to internal or external stimuli, via a mechanism that involves nervous system activity." [GOC:ems, GOC:jl, ISBN:0395448956, PMID:20160973] comment: 1. Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation reviews.\n2. While a broader definition of behavior encompassing plants and single cell organisms would be justified on the basis of some usage (see PMID:20160973 for discussion), GO uses a tight definition that limits behavior to animals and to responses involving the nervous system, excluding plant responses that GO classifies under development, and responses of unicellular organisms that has general classifications for covering the responses of cells in multicellular organisms (e.g. cell chemotaxis). xref: Wikipedia:Behavior -is_a: GO:0050896 ! response to stimulus +is_a: GO:0008150 ! biological_process [Term] id: GO:0008150 @@ -804,11 +805,6 @@ id: GO:0016772 name: transferase activity, transferring phosphorus-containing groups is_a: GO:0016740 ! transferase activity -[Term] -id: GO:0050896 -name: response to stimulus -is_a: GO:0008150 ! biological_process - [Term] id: IAO:0000001 name: conditional specification @@ -3249,7 +3245,7 @@ property_value: IAO:0000117 "Sarah Bost" xsd:string id: IAO:0020027 name: owner role def: "A role in a human social process that is based on a social act and whose bearer exercises exclusive control over a property, where this control is permitted by one or more deontic roles, which are parts of the owner role." [] -is_a: OMRSE:00000024 ! role in human social processes +is_a: OMRSE:00002072 ! role in human social processes property_value: IAO:0000112 "Tammy's owner role with regards to the house on 234 Evergreen Terrace; Walter's owner role with regards to the intellectual property on his movie script" xsd:string property_value: IAO:0000117 "Mathias Brochhausen" xsd:string property_value: IAO:0000119 https://github.com/d-acts/d-acts/issues/29 xsd:string @@ -3857,7 +3853,7 @@ property_value: IAO:0000117 "William R. Hogan" xsd:string [Term] id: OMRSE:00000002 name: party to a legal entity -is_a: OMRSE:00000024 ! role in human social processes +is_a: OMRSE:00002072 ! role in human social processes [Term] id: OMRSE:00000003 @@ -3911,7 +3907,7 @@ id: OMRSE:00000010 name: human health care role def: "A role in human social processes that is realized by health care processes such as seeking or providing treatment for disease and injury, diagnosing disease and injury, or undergoing diagnosis. " [] comment: Mathias Brochhausen -is_a: OMRSE:00000024 ! role in human social processes +is_a: OMRSE:00002072 ! role in human social processes relationship: BFO:0000054 OGMS:0000097 ! realized in health care encounter property_value: IAO:0000117 "William R. Hogan" xsd:string property_value: IAO:0000118 "health care role" xsd:string @@ -4011,20 +4007,21 @@ property_value: IAO:0000412 http://purl.obolibrary.org/obo/omrse.owl xsd:string [Term] id: OMRSE:00000024 -name: role in human social processes +name: obsolete role in human social processes def: "A role inhering in an entity realized by social interactions in human society." [] comment: Previous definition: A role played by an entity in human social processes. -is_a: BFO:0000023 ! role +is_a: ObsoleteClass ! Obsolete Class property_value: IAO:0000117 "Mathias Brochhausen" xsd:string property_value: IAO:0000412 http://purl.obolibrary.org/obo/omrse.owl xsd:string +is_obsolete: true [Term] id: OMRSE:00000025 name: organization social role def: "A role in human social processes that inheres in an organization." [] comment: Defined class that we will ultimately move to an application ontology. We are leaving here for now until we determine which application ontology: it is likely going to be an ontology that does not currently (2012-06-05) exist.\n\nDitto for its current descendants. -is_a: OMRSE:00000024 ! role in human social processes is_a: OMRSE:00000051 ! organization role +is_a: OMRSE:00002072 ! role in human social processes property_value: IAO:0000117 "William R. Hogan" xsd:string [Term] @@ -4034,8 +4031,8 @@ def: "A role in human social processes that inheres in an organism." [] comment: Defined class that we will ultimately move to an application ontology. We are leaving here for now until we determine which application ontology: it is likely going to be an ontology that does not currently (2012-06-05) exist.\n\nDitto for its current descendants. comment: Includes animals as well as humans. For example, pet, assistance animal, animal grown for food, work animal, domesticated animal, K-9, etc. Human roles include gender role, party to legal entities, health care provider roles like doctor, nurse, etc. comment: Previous definition: A role in human social processes played by an organism. -is_a: OMRSE:00000024 ! role in human social processes is_a: OMRSE:00000049 ! organism role +is_a: OMRSE:00002072 ! role in human social processes property_value: IAO:0000117 "William R. Hogan\nMathias Brochhausen" xsd:string [Term] @@ -4143,7 +4140,7 @@ id: OMRSE:00000038 name: legal person role def: "A role borne by a human individual or by a collection of humans regarded as possessing rights and duties enforeable at law." [] comment: We are aware of the fact that Wikipedia's definition differs from ours by saying that "Legal personality (...) is the characteristic of a non-living entity regarded by law to have the status of personhood" (http://en.wikipedia.org/wiki/Legal_personality) \nHowever, Shaw explicates:\n"In any legal system, certain entities, whether they be individuals or companies, will be regarded as possessing rights and duties enforceable at law. Thus an individual may prosecute or be prosecuted for assault and a company can sue for breach of contract. They are able to do this because the law recognises them as 'legal persons' possessing the capacity to have and to maintain certain rights, and being subject to perform specific duties. (...) In municipal law individuals, limited companies and public corporations are recognized as each possessing a distinct legal personality, the terms of which are circumscribed by the relevant legislation" (Shaw MN: International Law. Sixth Edition. Cambridge University Press, Cambridge, 2008). We hold that Shaw's position is ontological more prolific since it not only allows to explain how groups of individuals become recognized as unities at law, but also how different individuals can hold different legal personality roles (always against the context of one legal system). The latter will proof useful when dealing with the representing comatous patients or minorsat law in ontologies. -is_a: OMRSE:00000024 ! role in human social processes +is_a: OMRSE:00002072 ! role in human social processes property_value: IAO:0000117 "Mathias Brochhausen" xsd:string property_value: IAO:0000119 "Malcolm N. Shaw: International Law. Cambridge University Press, Cambridge, 2008." xsd:string @@ -4287,7 +4284,7 @@ property_value: IAO:0000117 "Mathias Brochhausen" xsd:string [Term] id: OMRSE:00000054 name: hospital role -def: "A healthcare provider role that inheres in an organization and is realized by providing inpatient and outpatient care." [] +def: "A healthcare provider role that inheres in an organization and is realized by providing inpatient care." [] is_a: OMRSE:00000015 ! health care provider organization role property_value: IAO:0000117 "Mathias Brochhausen" xsd:string @@ -4455,6 +4452,7 @@ property_value: IAO:0000117 "Amanda Hicks" xsd:string id: OMRSE:00000077 name: job role def: "A role in human social processes that, if realized, is realized when the bearer provides labor or services in exchange for a wage or salary as specified by some deontic declaration." [] +is_a: OMRSE:00002072 ! role in human social processes relationship: BFO:0000054 OMRSE:00000146 ! realized in employment process property_value: IAO:0000117 "Amanda hicks" xsd:string property_value: IAO:0000118 "employee" xsd:string @@ -4524,7 +4522,7 @@ property_value: IAO:0000118 "human organizational role" xsd:string id: OMRSE:00000087 name: employer role def: "a role in human social processes that is realized when the bearer provides a wage or salary in exchange for some labour or services as specified by some declaration" [] -is_a: OMRSE:00000024 ! role in human social processes +is_a: OMRSE:00002072 ! role in human social processes relationship: BFO:0000054 OMRSE:00000146 ! realized in employment process [Term] @@ -4556,7 +4554,7 @@ property_value: IAO:0000117 "Amanda Hicks" xsd:string id: OMRSE:00000092 name: insured party role def: "A role that inheres in an organism that is able to receive benefits from an insurance policy. The role, if realized, is realized by receiving benefits that are covered by the insurance policy." [] -is_a: OMRSE:00000024 ! role in human social processes +is_a: OMRSE:00002072 ! role in human social processes property_value: IAO:0000117 "Amanda Hicks" xsd:string [Term] @@ -4575,7 +4573,7 @@ property_value: IAO:0000117 "Amanda Hicks" xsd:string [Term] id: OMRSE:00000095 name: payer role -is_a: OMRSE:00000024 ! role in human social processes +is_a: OMRSE:00002072 ! role in human social processes [Term] id: OMRSE:00000096 @@ -5035,7 +5033,10 @@ is_a: OGMS:0000097 ! health care encounter [Term] id: OMRSE:00000161 name: leaving a health care facility after receiving care +def: "A process (1) where the active participant, who at the beginning of the process is located in a healthcare facility, exits the facility and no longer stands in a \"located in\" relationship to the facility and (2) is immediately preceded by a healthcare encounter in which the active participant also participated." [] is_a: BFO:0000015 ! process +relationship: RO:0002087 OGMS:0000097 ! immediately preceded by health care encounter +property_value: IAO:0000117 "William R. Hogan" xsd:string [Term] id: OMRSE:00000162 @@ -5242,47 +5243,44 @@ property_value: IAO:0000119 "Modified version of definition provided by Human Be [Term] id: OMRSE:00000192 -name: communication +name: obsolete communication def: "A process in which some participant shares some information content entity about some state of that participant with some other participant." [] comment: The term 'participant' in the definition need not refer to a human agent. -is_a: BFO:0000015 ! process -relationship: RO:0000057 BFO:0000040 ! has_participant material entity -relationship: RO:0000057 IAO:0000030 ! has_participant information content entity +is_a: ObsoleteClass ! Obsolete Class property_value: http://purl.org/dc/elements/1.1/contributor "Mathias Brochhausen" xsd:string property_value: http://purl.org/dc/elements/1.1/contributor "Matthew Diller" xsd:string property_value: http://purl.org/dc/elements/1.1/contributor "William R. Hogan" xsd:string property_value: IAO:0000117 "S. Clint Dowland" xsd:string +is_obsolete: true [Term] id: OMRSE:00000193 -name: linguistic competence +name: obsolete linguistic competence def: "A disposition inhering in a material entity that, if realized, is realized by that material entity’s communicating via some linguistic concretization." [] -is_a: BFO:0000016 ! disposition -relationship: BFO:0000054 OMRSE:00000192 ! realized in communication -relationship: RO:0000052 BFO:0000040 ! inheres in material entity +is_a: ObsoleteClass ! Obsolete Class property_value: http://purl.org/dc/elements/1.1/contributor "Mathias Brochhausen" xsd:string property_value: http://purl.org/dc/elements/1.1/contributor "Matthew Diller" xsd:string property_value: http://purl.org/dc/elements/1.1/contributor "William R. Hogan" xsd:string property_value: IAO:0000117 "S. Clint Dowland" xsd:string +is_obsolete: true [Term] id: OMRSE:00000194 -name: language +name: obsolete language def: "A disposition inhering in a linguistic community that (i) is a maximal aggregate of communicatively compatible linguistic competences, and (ii) if realized, is realized by any and all realizations of those linguistic competences." [] -is_a: BFO:0000016 ! disposition -relationship: BFO:0000054 OMRSE:00000192 ! realized in communication -relationship: RO:0002351 OMRSE:00000193 ! has member linguistic competence +is_a: ObsoleteClass ! Obsolete Class property_value: http://purl.org/dc/elements/1.1/contributor "Mathias Brochhausen" xsd:string property_value: http://purl.org/dc/elements/1.1/contributor "Matthew Diller" xsd:string property_value: http://purl.org/dc/elements/1.1/contributor "S. Clint Dowland" xsd:string property_value: IAO:0000117 "William R. Hogan" xsd:string +is_obsolete: true [Term] id: OMRSE:00000195 name: linguistic community def: "A maximal aggregate of material entities such that each member bears a linguistic competence for the same language." [] is_a: BFO:0000040 ! material entity -relationship: RO:0000053 OMRSE:00000194 ! bearer of language +relationship: RO:0000053 OMRSE:00002069 ! bearer of language property_value: http://purl.org/dc/elements/1.1/contributor "Mathias Brochhausen" xsd:string property_value: http://purl.org/dc/elements/1.1/contributor "S. Clint Dowland" xsd:string property_value: http://purl.org/dc/elements/1.1/contributor "William R. Hogan" xsd:string @@ -5290,26 +5288,26 @@ property_value: IAO:0000117 "Matthew Diller" xsd:string [Term] id: OMRSE:00000196 -name: expression of preferred language +name: obsolete expression of preferred language def: "A communication in which some participant states a preference for some communicative process to be in a certain language, and that has a concretization of a preferred language information content entity as its specified output." [] is_a: OBI:0000011 ! planned process -is_a: OMRSE:00000192 ! communication +is_a: OMRSE:00000192 ! obsolete communication property_value: http://purl.org/dc/elements/1.1/contributor "Mathias Brochhausen" xsd:string property_value: http://purl.org/dc/elements/1.1/contributor "Matthew Diller" xsd:string property_value: http://purl.org/dc/elements/1.1/contributor "William R. Hogan" xsd:string property_value: IAO:0000117 "S. Clint Dowland" xsd:string +is_obsolete: true [Term] id: OMRSE:00000197 -name: preferred language information content entity +name: obsolete preferred language information content entity def: "An information content entity that (i) is about some person, some language, and some linguistic competence; and (ii) conveys the language with which that person prefers to communicate within some given context." [] -is_a: IAO:0000030 ! information content entity -relationship: IAO:0000136 OMRSE:00000193 ! is about linguistic competence -relationship: IAO:0000136 OMRSE:00000194 ! is about language +is_a: ObsoleteClass ! Obsolete Class property_value: http://purl.org/dc/elements/1.1/contributor "Matthew Diller" xsd:string property_value: http://purl.org/dc/elements/1.1/contributor "S. Clint Dowland" xsd:string property_value: http://purl.org/dc/elements/1.1/contributor "William R. Hogan" xsd:string property_value: IAO:0000117 "Mathias Brochhausen" xsd:string +is_obsolete: true [Term] id: OMRSE:00000198 @@ -5317,7 +5315,7 @@ name: information content entity-request process def: "a communication in which some participant requests of some other participant an information content entity about some portion of reality" [] comment: As with the parent class, 'participant' in the definition need not refer to a human agent. comment: The medium and grammatical form are irrelevant. For example, the request may be written or spoken, and while it may be in the form of a question, it need not be. -is_a: OMRSE:00000192 ! communication +is_a: OMRSE:00002068 ! communication property_value: IAO:0000117 "S. Clint Dowland" xsd:string [Term] @@ -5813,7 +5811,7 @@ def: "An educating that realizes a concretization of some program of education." comment: Note that parent class 'educating' and referenced class 'program of education' are defined elsewhere in this education module of OMRSE. comment: This class refers extremely broadly to the successful realization of any program of education: a single course, first grade, MD, PhD, high school, the ninth grade, getting a black belt in karate, getting a master mechanic certification, a bachelor's degree, a masters degree, a graduate certificate, early childhood education program, and even getting a certificate at the end of some week-long workshop, summer camp, a certifcate from a cooking class, an actuarial certification. is_a: OMRSE:00002029 ! education process -property_value: IAO:0000111 "completing a program of eduction" xsd:string +property_value: IAO:0000111 "completing a program of education" xsd:string property_value: IAO:0000117 "William R. Hogan" xsd:string [Term] @@ -5960,7 +5958,7 @@ property_value: IAO:0000119 http://uis.unesco.org/sites/default/files/documents/ [Term] id: OMRSE:00002045 name: highest level of education data item -def: "A socio-economic data item that is about a person and their completion of an education program (and its type), where that education progam is the last one in a sequence (of education programs) that the person has completed, where each education program completed except the last one is a pre-requisite to the education program completed after it." [] +def: "A socio-economic data item that is about a person and their completion of an education program (and its type), where that education program is the last one in a sequence (of education programs) that the person has completed, where each education program completed except the last one is a pre-requisite to the education program completed after it." [] comment: This data item in a typical attribute-value system such as table, XML, JSON takes values like "secondary education", "Associate Degree", "Bachelor Degree", "High School", and so on. is_a: OMRSE:00000506 ! socio-economic data item property_value: IAO:0000111 "highest level of education socio-economic data item" xsd:string @@ -5968,8 +5966,8 @@ property_value: IAO:0000117 "William R. Hogan" xsd:string [Term] id: OMRSE:00002046 +name: vocational education program def: "An educational plan specification that has a vocational objective specification as part." [] -comment: vocational education program comment: Vocational education programs are designed for learners to acquire the knowledge, skills and competencies specific to a particular occupation, trade, or class of occupations or trades. Such programs may have work-based components (e.g. apprenticeships, dual-system education programmes). Successful completion of such programs leads to labor market-relevant, vocational qualifications acknowledged as occupationally-oriented by the relevant national authorities and/or the labor market. is_a: OMRSE:00002031 ! educational program intersection_of: OMRSE:00002031 ! educational program @@ -5981,12 +5979,12 @@ property_value: IAO:0000119 http://uis.unesco.org/sites/default/files/documents/ [Term] id: OMRSE:00002047 +name: kindergarten education program def: "A primary education plan specification that specifies the competencies and information content entities that should be acquired by students in the first year of primary education in the United States." [] is_a: OMRSE:00002034 ! primary education program property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0002-9881-1017 property_value: http://purl.org/dc/elements/1.1/date 2020-09-02T12:38:43Z xsd:dateTime property_value: IAO:0000111 "kindergarten education plan specification" xsd:string -property_value: IAO:0000117 "kindergarten education program" xsd:string property_value: IAO:0000117 "William R. Hogan" xsd:string [Term] @@ -6137,6 +6135,133 @@ property_value: http://purl.org/dc/elements/1.1/contributor "S. Clint Dowland" x property_value: http://purl.org/dc/elements/1.1/contributor "William R. Hogan" xsd:string property_value: IAO:0000119 http://purl.obolibrary.org/obo/ERO_0002033 xsd:string +[Term] +id: OMRSE:00002061 +name: monetary personal income data item +def: "A data item that is about the sum of earnings for some person(s) from various forms of payment or profits." [] +comment: We use the phrase ‘some person’ in the definition because this class can be about an individual's or a household's earnings. Similarly, we use 'personal income' in the label because the term is typically restricted to individuals and households. This class is also restricted to being about monetary forms of income. +is_a: IAO:0000027 ! data item +property_value: http://purl.org/dc/elements/1.1/contributor "Chris Stoeckert" xsd:string +property_value: IAO:0000112 "Examples of monetary forms of payment include: wages, salary, or tips; interest generated by capital; dividends earned; lottery, game, or contest monetary winnings; alimony; royalties; trusts; pensions; receipt of rental payments; unemployment payments; social security payments; worker's compensation; social security payments; or profit from entrepreneurial activities." xsd:string +property_value: IAO:0000117 "Matthew Diller" xsd:string + +[Term] +id: OMRSE:00002062 +name: concretization-utilization process +def: "Process in which some participant utilizes some specifically dependent continuant as a concretization of some generically dependent continuant." [] +comment: Instances include any process that brings it about that some specifically dependent continuant begins to stand in a concretization relation to some generically dependent continuant, as well as any process in which someone makes use of a pre-established concretization relation. To be clear, instances do not include using concretizations of words or letters for purposes that do not make use of the concretization relations in which they stand (for example, hanging up a sign in a foreign language as a decoration because one likes the colors, despite having no idea what the sign says). +comment: Instances include, but are not limited to, processes that bring about cognitive concretizations. +is_a: BFO:0000015 ! process +relationship: RO:0000057 BFO:0000040 ! has_participant material entity +property_value: http://purl.org/dc/elements/1.1/contributor "Matthew Diller" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Sarah Bost" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "William R. Hogan" xsd:string +property_value: IAO:0000112 "Taking notes on a meeting is an example in which the concretization relation is newly established, since the SDCs that concretize the GDCs come into existence as the notes are written. In contrast, using slides prepared by someone else in order to convey information during a presentation is a case of using a concretization in which the performer neither brings the concretizing SDCs into existence nor is responsible for their standing in the concretization relation to the relevant GDCs. A nonlinguistic example is drawing the logo of one’s favorite brand, in which one creates a pattern that concretizes a GDC that is also concretized by patterns on products of the brand." xsd:string +property_value: IAO:0000117 "S. Clint Dowland" xsd:string + +[Term] +id: OMRSE:00002063 +name: linguistic concretization-utilization process +def: "A concretization-utilization process in which the utilized specifically dependent continuant concretizes the generically dependent through use of some language." [] +is_a: OMRSE:00002062 ! concretization-utilization process +property_value: http://purl.org/dc/elements/1.1/contributor "Matthew Diller" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Sarah Dowland" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "William R. Hogan" xsd:string +property_value: IAO:0000117 "S. Clint Dowland" xsd:string + +[Term] +id: OMRSE:00002064 +name: concretization-interpretation process +def: "Process in which some participant infers that some particular specifically dependent continuant stands in the concretization relation to some particular generically dependent continuant." [] +comment: The interpretation need not be accurate. It may even be the case that the specifically dependent continuant has not previously concretized anything. +is_a: BFO:0000015 ! process +relationship: RO:0000057 BFO:0000020 ! has_participant specifically dependent continuant +relationship: RO:0000057 BFO:0000040 ! has_participant material entity +property_value: http://purl.org/dc/elements/1.1/contributor "Matthew Diller" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Sarah Bost" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "William R. Hogan" xsd:string +property_value: IAO:0000112 "For example, reading a text message that says, “It is raining outside,” and inferring that the words on the screen are meant to convey information about the weather. The pattern on the screen that corresponds to the words is the SDC, and the ICE about the rain is the GDC. Or, hearing your spouse say, “Can you come to the kitchen?” and then knowing that your spouse wants you to come to the kitchen. You have interpreted the patterns of the sound as concretizing a GDC about what your spouse wants. Or, seeing a drawing of a basketball player and inferring—perhaps incorrectly—that it is of Michael Jordan." xsd:string +property_value: IAO:0000117 "S. Clint Dowland" xsd:string + +[Term] +id: OMRSE:00002065 +name: linguistic concretization-interpretation process +def: "A concretization-interpretation process in which the specifically dependent continuant is inferred to concretize the generically dependent continuant in a way that makes use of some language." [] +is_a: OMRSE:00002064 ! concretization-interpretation process +property_value: http://purl.org/dc/elements/1.1/contributor "Matthew Diller" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Sarah Bost" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "William R. Hogan" xsd:string +property_value: IAO:0000117 "S. Clint Dowland" xsd:string + +[Term] +id: OMRSE:00002066 +name: linguistic competence +def: "A disposition that inheres in some material entity and is such that that, if realized, it is realized by either some linguistic concretization-utilization process or some linguistic concretization-interpretation process." [] +comment: When realized in a concretization-utilization process, the only relevant concretization may in some cases be a cognitive one, but that suffices to realize a linguistic competence. For example, suppose one begins to write a letter, planning out the words ahead of time, but is interrupted before beginning to write and never resumes. During the process of planning out the words and what one intends to communicate, one is already concretizing words cognitively, as well as considering which combinations of words one can use to concretize additional generically dependent continuants. In doing so, one performs processes that realize one's linguistic competence, without producing any concretizations other than those cognitive ones. +is_a: BFO:0000016 ! disposition +relationship: RO:0000052 BFO:0000040 ! inheres in material entity +property_value: http://purl.org/dc/elements/1.1/contributor "Mathias Brochhausen" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Matthew Diller" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "William R. Hogan" xsd:string +property_value: IAO:0000117 "S. Clint Dowland" xsd:string + +[Term] +id: OMRSE:00002068 +name: communication +def: "A process in which some participant shares some generically dependent continuant with some other participant. The former utilizes some specifically dependent continuant that concretizes the generically dependent continuant intended to be shared, while the latter interprets that specifically dependent continuant to concretize some particular generically dependent continuant, aiming to accurately infer the other participant’s intent." [] +comment: For example, if you tell someone, “It is raining,” you produce sounds that have patterns that concretize information about the weather. Your utilization of that concretization is part of the communication. When the other person hears you, they interpret those patterns to concretize something, which may or may not be the same as what you intended to convey. In other words, they interpret the sounds you produce to have meanings associated with them, and that interpretation process is another part of the communication. If a process does not have a part of each type, it is not a communication. +comment: The interpretation need not correspond exactly to what was intended by the other participant. +comment: The term 'participant' in the definition need not refer to a human agent. +is_a: BFO:0000015 ! process +relationship: RO:0000057 BFO:0000040 ! has_participant material entity +property_value: http://purl.org/dc/elements/1.1/contributor "Mathias Brochhausen" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Matthew Diller" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "William R. Hogan" xsd:string +property_value: IAO:0000117 "S. Clint Dowland" xsd:string + +[Term] +id: OMRSE:00002069 +name: language +def: "A disposition that (i) is an aggregate of linguistic competences, considered as forming a distinct group on the basis of perceived common characteristics, such as mutual intelligibility among their bearers, in addition to historical or cultural factors; (ii) if realized, is realized in any and all realizations of those linguistic competences; and (iii) inheres in a linguistic community." [] +is_a: BFO:0000016 ! disposition +relationship: RO:0002351 OMRSE:00002066 ! has member linguistic competence +property_value: http://purl.org/dc/elements/1.1/contributor "Mathias Brochhausen" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Matthew Diller" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "S. Clint Dowland" xsd:string +property_value: IAO:0000117 "William R. Hogan" xsd:string + +[Term] +id: OMRSE:00002070 +name: disclosure of preferred language +def: "A communication in which some participant states a preference for some communicative process to be in a certain language, via some concretization of some preferred language information content entity." [] +is_a: OMRSE:00002068 ! communication +property_value: http://purl.org/dc/elements/1.1/contributor "Mathias Brochhausen" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Matthew Diller" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "William R. Hogan" xsd:string +property_value: IAO:0000117 "S. Clint Dowland" xsd:string + +[Term] +id: OMRSE:00002071 +name: preferred language information content entity +def: "An information content entity that is about some person and some language, and that conveys the language with which that person prefers to communicate within some given context." [] +is_a: IAO:0000030 ! information content entity +relationship: IAO:0000136 BFO:0000040 ! is about material entity +relationship: IAO:0000136 OMRSE:00002069 ! is about language +property_value: http://purl.org/dc/elements/1.1/contributor "Matthew Diller" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "S. Clint Dowland" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "William R. Hogan" xsd:string +property_value: IAO:0000117 "Mathias Brochhausen" xsd:string + +[Term] +id: OMRSE:00002072 +name: role in human social processes +def: "A role inhering in an entity realized by social interactions in human society." [] +comment: Previous definition: A role played by an entity in human social processes. +is_a: OMRSE:00000048 ! material entity role +relationship: RO:0000052 BFO:0000040 ! inheres in material entity +property_value: http://purl.org/dc/elements/1.1/contributor "Mathias Brochhausen" xsd:string +property_value: IAO:0000117 "Matthew Diller" xsd:string + [Term] id: OOSTT:00000074 name: academic degree @@ -6196,6 +6321,12 @@ property_value: OOSTT:00000030 "An advanced academic degree in the principles an id: ObsoleteClass name: Obsolete Class +[Term] +id: PATO:0000001 +name: quality +is_a: BFO:0000020 ! specifically dependent continuant +property_value: IAO:0000589 "quality (PATO)" xsd:string + [Term] id: PATO:0000051 name: morphology @@ -6315,6 +6446,7 @@ property_value: IAO:0000112 "my brain is part of my body (continuant parthood, t property_value: IAO:0000112 "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)" xsd:string property_value: IAO:0000112 "this day is part of this year (occurrent parthood)" xsd:string property_value: IAO:0000116 "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other." xsd:string +property_value: IAO:0000116 "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/" xsd:string property_value: IAO:0000116 "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" xsd:string property_value: IAO:0000116 "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." xsd:string property_value: IAO:0000118 "part_of" xsd:string @@ -6347,6 +6479,7 @@ property_value: IAO:0000112 "my body has part my brain (continuant parthood, two property_value: IAO:0000112 "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)" xsd:string property_value: IAO:0000112 "this year has part this day (occurrent parthood)" xsd:string property_value: IAO:0000116 "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part." xsd:string +property_value: IAO:0000116 "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/" xsd:string property_value: IAO:0000116 "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" xsd:string property_value: IAO:0000116 "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'." xsd:string property_value: IAO:0000118 "has_part" xsd:string @@ -6802,22 +6935,30 @@ name: provides service [Typedef] id: RO:0000052 +name: characteristic of name: inheres in +def: "a relation between a specifically dependent continuant (the characteristic) and any other entity (the bearer), in which the characteristic depends on the bearer for its existence." [] def: "a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence" [] +comment: Note that this relation was previously called "inheres in", but was changed to be called "characteristic of" because BFO2 uses "inheres in" in a more restricted fashion. This relation differs from BFO2:inheres_in in two respects: (1) it does not impose a range constraint, and thus it allows qualities of processes, as well as of information entities, whereas BFO2 restricts inheres_in to only apply to independent continuants (2) it is declared functional, i.e. something can only be a characteristic of one thing. property_value: IAO:0000111 "inheres in" xsd:string property_value: IAO:0000112 "this fragility inheres in this vase" xsd:string +property_value: IAO:0000112 "this fragility is a characteristic of this vase" xsd:string property_value: IAO:0000112 "this red color inheres in this apple" xsd:string +property_value: IAO:0000112 "this red color is a characteristic of this apple" xsd:string property_value: IAO:0000116 "A dependent inheres in its bearer at all times for which the dependent exists." xsd:string property_value: IAO:0000118 "inheres_in" xsd:string property_value: RO:0001900 RO:0001901 -is_a: RO:0002314 ! inheres in part of +is_functional: true +is_a: RO:0002314 ! characteristic of part of inverse_of: RO:0000053 ! bearer of [Typedef] id: RO:0000053 name: bearer of name: bearer_of +name: has characteristic def: "a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence" [] +def: "Inverse of characteristic_of" [] property_value: IAO:0000111 "bearer of" xsd:string property_value: IAO:0000112 "this apple is bearer of this red color" xsd:string property_value: IAO:0000112 "this vase is bearer of this fragility" xsd:string @@ -6826,6 +6967,7 @@ property_value: IAO:0000118 "bearer_of" xsd:string property_value: IAO:0000118 "is bearer of" xsd:string property_value: RO:0001900 RO:0001901 range: BFO:0000020 ! specifically dependent continuant +is_inverse_functional: true [Typedef] id: RO:0000056 @@ -6883,6 +7025,7 @@ range: BFO:0000031 ! generically dependent continuant id: RO:0000079 name: function of def: "a relation between a function and an independent continuant (the bearer), in which the function specifically depends on the bearer for its existence" [] +comment: This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020. property_value: IAO:0000112 "this catalysis function is a function of this enzyme" xsd:string property_value: IAO:0000116 "A function inheres in its bearer at all times for which the function exists, however the function need not be realized at all the times that the function exists." xsd:string property_value: IAO:0000118 "function_of" xsd:string @@ -6895,6 +7038,7 @@ inverse_of: RO:0000085 ! has function id: RO:0000080 name: quality of def: "a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence" [] +comment: This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020. property_value: IAO:0000112 "this red color is a quality of this apple" xsd:string property_value: IAO:0000116 "A quality inheres in its bearer at all times for which the quality exists." xsd:string property_value: IAO:0000118 "is quality of" xsd:string @@ -6906,6 +7050,7 @@ inverse_of: RO:0000086 ! has quality id: RO:0000081 name: role of def: "a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence" [] +comment: This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020. property_value: IAO:0000112 "this investigator role is a role of this person" xsd:string property_value: IAO:0000116 "A role inheres in its bearer at all times for which the role exists, however the role need not be realized at all the times that the role exists." xsd:string property_value: IAO:0000118 "is role of" xsd:string @@ -6957,6 +7102,9 @@ inverse_of: RO:0000092 ! disposition of [Typedef] id: RO:0000092 name: disposition of +def: "inverse of has disposition" [] +comment: This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020. +subset: RO:0002259 is_a: RO:0000052 ! inheres in [Typedef] @@ -7036,6 +7184,15 @@ property_value: RO:0001900 RO:0001901 domain: BFO:0000040 ! material entity range: BFO:0000141 ! immaterial entity +[Typedef] +id: RO:0002012 +name: occurrent part of +def: "A part of relation that applies only between occurrents." [] +domain: BFO:0000003 ! occurrent +range: BFO:0000003 ! occurrent +is_a: BFO:0000050 ! part of +is_a: RO:0002418 ! causally upstream of or within + [Typedef] id: RO:0002013 name: has regulatory component activity @@ -7202,7 +7359,6 @@ id: RO:0002211 name: regulates def: "process(P1) regulates process(P2) iff: P1 results in the initiation or termination of P2 OR affects the frequency of its initiation or termination OR affects the magnitude or rate of output of P2." [] subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension -subset: http://purl.obolibrary.org/obo/valid_for_go_gp2term subset: http://purl.obolibrary.org/obo/valid_for_go_ontology subset: http://purl.obolibrary.org/obo/valid_for_gocam property_value: IAO:0000114 IAO:0000125 @@ -7229,7 +7385,6 @@ id: RO:0002212 name: negatively regulates def: "Process(P1) negatively regulates process(P2) iff: P1 terminates P2, or P1 descreases the the frequency of initiation of P2 or the magnitude or rate of output of P2." [] subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension -subset: http://purl.obolibrary.org/obo/valid_for_go_gp2term subset: http://purl.obolibrary.org/obo/valid_for_go_ontology subset: http://purl.obolibrary.org/obo/valid_for_gocam property_value: IAO:0000117 "Chris Mungall" xsd:string @@ -7246,7 +7401,6 @@ id: RO:0002213 name: positively regulates def: "Process(P1) postively regulates process(P2) iff: P1 initiates P2, or P1 increases the the frequency of initiation of P2 or the magnitude or rate of output of P2." [] subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension -subset: http://purl.obolibrary.org/obo/valid_for_go_gp2term subset: http://purl.obolibrary.org/obo/valid_for_go_ontology subset: http://purl.obolibrary.org/obo/valid_for_gocam property_value: IAO:0000117 "Chris Mungall" xsd:string @@ -7282,7 +7436,7 @@ name: capable of part of def: "c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p." [] property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000118 "has function in" xsd:string -property_value: seeAlso "defining-property-chains-involving-reflexivity" +property_value: seeAlso http://purl.obolibrary.org/obo/ro/docs/reflexivity/ holds_over_chain: RO:0002215 BFO:0000050 {http://purl.obolibrary.org/obo/RO_0002582="true"} is_a: RO:0002328 ! functionally related to is_a: RO:0002500 ! causal agent in process @@ -7296,11 +7450,13 @@ property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000118 "agent in" xsd:string is_a: ObsoleteProperty is_obsolete: true +replaced_by: RO:0002608 [Typedef] id: RO:0002218 name: has active participant name: obsolete has active participant +def: "OBSOLETE x has participant y if and only if x realizes some active role that inheres in y" [] def: "x has participant y if and only if x realizes some active role that inheres in y" [] subset: ro-eco property_value: IAO:0000112 "'heart development' has active participant some Shh protein" xsd:string @@ -7311,6 +7467,7 @@ property_value: IAO:0000118 "has agent" xsd:string property_value: IAO:0000412 http://purl.obolibrary.org/obo/ro.owl xsd:string is_a: RO:0000057 ! has_participant is_obsolete: true +replaced_by: RO:0002500 [Typedef] id: RO:0002222 @@ -7458,13 +7615,14 @@ is_a: RO:0004046 ! causally upstream of or within, negative effect [Typedef] id: RO:0002314 -name: inheres in part of -def: "q inheres in part of w if and only if there exists some p such that q inheres in p and p part of w." [] -property_value: IAO:0000116 "Because part_of is transitive, inheres in is a sub-relation of inheres in part of" xsd:string +name: characteristic of part of +def: "q characteristic of part of w if and only if there exists some p such that q inheres in p and p part of w." [] +property_value: IAO:0000116 "Because part_of is transitive, inheres in is a sub-relation of characteristic of part of" xsd:string property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "inheres in part of" xsd:string property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/20064205 property_value: RO:0001900 RO:0001901 -property_value: seeAlso "defining-property-chains-involving-reflexivity" +property_value: seeAlso http://purl.obolibrary.org/obo/ro/docs/reflexivity/ holds_over_chain: RO:0000052 BFO:0000050 {http://purl.obolibrary.org/obo/RO_0002582="true"} is_a: RO:0002502 ! depends on transitive_over: BFO:0000050 ! part of @@ -7489,7 +7647,6 @@ property_value: IAO:0000118 "has" xsd:string property_value: IAO:0000118 "is catalyzing" xsd:string property_value: IAO:0000118 "is executing" xsd:string property_value: IAO:0000232 "This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized." xsd:string -property_value: IAO:0000232 "This relation is currently used experimentally by the Gene Ontology Consortium. It may not be stable and may be obsoleted at some future time." xsd:string is_a: RO:0002215 ! capable of inverse_of: RO:0002333 ! enabled by transitive_over: BFO:0000051 ! has part @@ -7722,12 +7879,12 @@ name: interacts with def: "A relationship that holds between two entities in which the processes executed by the two entities are causally connected." [] subset: ro-eco synonym: "in pairwise interaction with" EXACT [] -property_value: http://xmlns.com/foaf/0.1/page https://github.com/oborel/obo-relations/wiki/InteractionRelations xsd:anyURI +property_value: closeMatch http://purl.obolibrary.org/obo/MI_0914 xsd:anyURI property_value: IAO:0000116 "Considering relabeling as 'pairwise interacts with'" xsd:anyURI property_value: IAO:0000116 "This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact." xsd:string property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000232 "Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules." xsd:string -property_value: seeAlso http://purl.obolibrary.org/obo/MI_0914 xsd:anyURI +property_value: seeAlso http://purl.obolibrary.org/obo/ro/docs/interaction-relations/ xsd:anyURI domain: BFO:0000040 ! material entity range: BFO:0000040 ! material entity is_symmetric: true @@ -7736,11 +7893,11 @@ is_symmetric: true id: RO:0002436 name: molecularly interacts with def: "An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other." [] +property_value: closeMatch http://purl.obolibrary.org/obo/MI_0915 xsd:anyURI property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000118 "binds" xsd:string property_value: IAO:0000118 "molecularly binds with" xsd:string property_value: seeAlso ECO:0000353 -property_value: seeAlso http://purl.obolibrary.org/obo/MI_0915 xsd:anyURI is_symmetric: true is_a: RO:0002434 ! interacts with @@ -7858,9 +8015,9 @@ inverse_of: RO:0002566 ! causally influences [Typedef] id: RO:0002563 name: interaction relation helper property -property_value: http://xmlns.com/foaf/0.1/page https://github.com/oborel/obo-relations/wiki/InteractionRelations xsd:anyURI property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: seeAlso http://ontologydesignpatterns.org/wiki/Submissions:N-Ary_Relation_Pattern_%28OWL_2%29 +property_value: seeAlso http://purl.obolibrary.org/obo/ro/docs/interaction-relations/ xsd:anyURI is_a: RO:0002464 ! helper property (not for use in curation) [Typedef] @@ -8113,3 +8270,42 @@ domain: BFO:0000040 ! material entity range: BFO:0000040 ! material entity is_a: RO:0002566 ! causally influences +[Typedef] +id: RO:0017001 +name: utilizes +def: "X utilizes Y means X and Y are material entities, and X is capable of some process P that has input Y." [] +property_value: IAO:0000112 "A diagnostic testing device utilizes a specimen." xsd:string +property_value: IAO:0000117 "Asiyah Lin" xsd:string +property_value: IAO:0000117 "https://orcid.org/0000-0001-9625-1899 Bill Duncan" xsd:string +property_value: IAO:0000232 "A diagnostic testing device utilizes a specimen means that the diagnostic testing device is capable of an assay, and this assay a specimen as its input." xsd:string +property_value: IAO:0000232 "See github ticket https://github.com/oborel/obo-relations/issues/497" xsd:string +holds_over_chain: RO:0002215 RO:0002233 +creation_date: 2021-11-08 + +[Typedef] +id: RO:0019000 +name: regulates characteristic +def: "A relationship that holds between a process and a characteristic in which process (P) regulates characteristic (C) iff: P results in the existence of C OR affects the intensity or magnitude of C." [] +property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-8688-6599 +domain: BFO:0000015 ! process +range: PATO:0000001 ! quality +holds_over_chain: RO:0002211 RO:0019000 +is_a: RO:0002410 ! causally related to + +[Typedef] +id: RO:0019001 +name: positively regulates characteristic +def: "A relationship that holds between a process and a characteristic in which process (P) positively regulates characteristic (C) iff: P results in an increase in the intensity or magnitude of C." [] +property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-8688-6599 +holds_over_chain: RO:0002213 RO:0019001 +is_a: RO:0019000 ! regulates characteristic + +[Typedef] +id: RO:0019002 +name: negatively regulates characteristic +def: "A relationship that holds between a process and a characteristic in which process (P) negatively regulates characteristic (C) iff: P results in a decrease in the intensity or magnitude of C." [] +property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-8688-6599 +holds_over_chain: RO:0002212 RO:0019001 +holds_over_chain: RO:0002213 RO:0019002 +is_a: RO:0019000 ! regulates characteristic + diff --git a/omrse-full.owl b/omrse-full.owl index 04073c1..5f5240c 100644 --- a/omrse-full.owl +++ b/omrse-full.owl @@ -10,6 +10,7 @@ xmlns:foaf="http://xmlns.com/foaf/0.1/" xmlns:obo1="http://purl.org/obo/owl/obo#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" + xmlns:skos="http://www.w3.org/2004/02/skos/core#" xmlns:swrl="http://www.w3.org/2003/11/swrl#" xmlns:swrla="http://swrl.stanford.edu/ontologies/3.3/swrla.owl#" xmlns:swrlb="http://www.w3.org/2003/11/swrlb#" @@ -18,7 +19,7 @@ xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + Daniel Welch Amanda Hicks Mathias Brochhausen @@ -29,7 +30,7 @@ This ontology grew out of efforts to represent the reality underlying the demographic information required by the US federal government's "meaningful use" criteria for electronic medical records and a presentation by Dr. William Hogan at the Electronic Health Record of the Future conference in Buffalo, NY http://ontology.buffalo.edu/EHR/Demographics_Hogan_Buffalo_2010_09_22.ppt The Ontology of Medically Related Social Entities 2020-10-27 - 2021-08-30 + 2022-04-06 @@ -969,6 +970,12 @@ EquivalentTo: xsd:integer[> 2151 , <= 2300] + + + + + + @@ -1015,6 +1022,7 @@ EquivalentTo: xsd:integer[> 2151 , <= 2300] this day is part of this year (occurrent parthood) a core relation that holds between a part and its whole Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other. + Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/ Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.) @@ -1059,6 +1067,7 @@ A continuant cannot be part of an occurrent: use 'participates in'. An this year has part this day (occurrent parthood) a core relation that holds between a whole and its part Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part. + Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/ Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.) @@ -1870,13 +1879,19 @@ We expect BFO 2.0 to have this relation as well, and we will obsolete this prope + inheres in this fragility inheres in this vase + this fragility is a characteristic of this vase this red color inheres in this apple + this red color is a characteristic of this apple + a relation between a specifically dependent continuant (the characteristic) and any other entity (the bearer), in which the characteristic depends on the bearer for its existence. a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence A dependent inheres in its bearer at all times for which the dependent exists. inheres_in + Note that this relation was previously called "inheres in", but was changed to be called "characteristic of" because BFO2 uses "inheres in" in a more restricted fashion. This relation differs from BFO2:inheres_in in two respects: (1) it does not impose a range constraint, and thus it allows qualities of processes, as well as of information entities, whereas BFO2 restricts inheres_in to only apply to independent continuants (2) it is declared functional, i.e. something can only be a characteristic of one thing. + characteristic of inheres in @@ -1885,10 +1900,12 @@ We expect BFO 2.0 to have this relation as well, and we will obsolete this prope + bearer of this apple is bearer of this red color this vase is bearer of this fragility + Inverse of characteristic_of a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist. bearer_of @@ -1896,6 +1913,7 @@ We expect BFO 2.0 to have this relation as well, and we will obsolete this prope bearer of bearer_of + has characteristic @@ -1989,6 +2007,7 @@ We expect BFO 2.0 to have this relation as well, and we will obsolete this prope A function inheres in its bearer at all times for which the function exists, however the function need not be realized at all the times that the function exists. function_of is function of + This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020. function of @@ -2004,6 +2023,7 @@ We expect BFO 2.0 to have this relation as well, and we will obsolete this prope A quality inheres in its bearer at all times for which the quality exists. is quality of quality_of + This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020. quality of @@ -2019,6 +2039,7 @@ We expect BFO 2.0 to have this relation as well, and we will obsolete this prope A role inheres in its bearer at all times for which the role exists, however the role need not be realized at all the times that the role exists. is role of role_of + This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020. role of @@ -2085,6 +2106,9 @@ We expect BFO 2.0 to have this relation as well, and we will obsolete this prope + inverse of has disposition + + This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020. disposition of @@ -2223,6 +2247,19 @@ We expect BFO 2.0 to have this relation as well, and we will obsolete this prope + + + + + + + + A part of relation that applies only between occurrents. + occurrent part of + + + + @@ -2531,7 +2568,6 @@ We expect BFO 2.0 to have this relation as well, and we will obsolete this prope regulates (processual) false - regulates @@ -2555,7 +2591,6 @@ We expect BFO 2.0 to have this relation as well, and we will obsolete this prope negatively regulates (process to process) - negatively regulates @@ -2584,7 +2619,6 @@ We expect BFO 2.0 to have this relation as well, and we will obsolete this prope positively regulates (process to process) - positively regulates @@ -2625,7 +2659,7 @@ We expect BFO 2.0 to have this relation as well, and we will obsolete this prope Chris Mungall has function in capable of part of - + @@ -2646,8 +2680,9 @@ We expect BFO 2.0 to have this relation as well, and we will obsolete this prope OBSOLETE x actively participates in y if and only if x participates in y and x realizes some active role Chris Mungall agent in + Obsoleted as the inverse property was obsoleted. - obsolete actively participates in + obsolete actively participates in true @@ -2659,11 +2694,13 @@ We expect BFO 2.0 to have this relation as well, and we will obsolete this prope 'heart development' has active participant some Shh protein + OBSOLETE x has participant y if and only if x realizes some active role that inheres in y x has participant y if and only if x realizes some active role that inheres in y This may be obsoleted and replaced by the original 'has agent' relation Chris Mungall has agent http://purl.obolibrary.org/obo/ro.owl + has active participant obsolete has active participant @@ -2891,13 +2928,14 @@ We expect BFO 2.0 to have this relation as well, and we will obsolete this prope - q inheres in part of w if and only if there exists some p such that q inheres in p and p part of w. - Because part_of is transitive, inheres in is a sub-relation of inheres in part of + q characteristic of part of w if and only if there exists some p such that q inheres in p and p part of w. + Because part_of is transitive, inheres in is a sub-relation of characteristic of part of Chris Mungall + inheres in part of - inheres in part of - + characteristic of part of + @@ -2944,7 +2982,6 @@ We expect BFO 2.0 to have this relation as well, and we will obsolete this prope is catalyzing is executing This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized. - This relation is currently used experimentally by the Gene Ontology Consortium. It may not be stable and may be obsoleted at some future time. enables @@ -3345,8 +3382,8 @@ Each of these 3 primitives can be composed to yield a cross-product of different in pairwise interaction with interacts with - http://purl.obolibrary.org/obo/MI_0914 - https://github.com/oborel/obo-relations/wiki/InteractionRelations + http://purl.obolibrary.org/obo/ro/docs/interaction-relations/ + http://purl.obolibrary.org/obo/MI_0914 @@ -3362,7 +3399,7 @@ Each of these 3 primitives can be composed to yield a cross-product of different molecularly binds with molecularly interacts with - http://purl.obolibrary.org/obo/MI_0915 + http://purl.obolibrary.org/obo/MI_0915 @@ -3564,7 +3601,7 @@ For example, A and B may be gene products and binding of B by A positively regul Chris Mungall interaction relation helper property - https://github.com/oborel/obo-relations/wiki/InteractionRelations + http://purl.obolibrary.org/obo/ro/docs/interaction-relations/ @@ -3966,15 +4003,79 @@ For example, A and B may be gene products and binding of B by A positively regul - + - + + + + + + A diagnostic testing device utilizes a specimen. + X utilizes Y means X and Y are material entities, and X is capable of some process P that has input Y. + Asiyah Lin + https://orcid.org/0000-0001-9625-1899 Bill Duncan + A diagnostic testing device utilizes a specimen means that the diagnostic testing device is capable of an assay, and this assay a specimen as its input. + See github ticket https://github.com/oborel/obo-relations/issues/497 + 2021-11-08 + utilizes + + + + + + + + + + + + + + + A relationship that holds between a process and a characteristic in which process (P) regulates characteristic (C) iff: P results in the existence of C OR affects the intensity or magnitude of C. + + regulates characteristic + + + + + + + + + + + + + A relationship that holds between a process and a characteristic in which process (P) positively regulates characteristic (C) iff: P results in an increase in the intensity or magnitude of C. + + positively regulates characteristic + + + + + + + + + + + + + + + + + A relationship that holds between a process and a characteristic in which process (P) negatively regulates characteristic (C) iff: P results in a decrease in the intensity or magnitude of C. + + negatively regulates characteristic + - + - + @@ -5000,6 +5101,12 @@ For example, A and B may be gene products and binding of B by A positively regul + + + + + + quality Quality the ambient temperature of this portion of air @@ -5924,7 +6031,7 @@ For example, A and B may be gene products and binding of B by A positively regul - + The internally coordinated responses (actions or inactions) of animals (individuals or groups) to internal or external stimuli, via a mechanism that involves nervous system activity. Wikipedia:Behavior 1. Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation reviews. @@ -5995,15 +6102,6 @@ For example, A and B may be gene products and binding of B by A positively regul - - - - - response to stimulus - - - - @@ -10276,7 +10374,7 @@ Is part_of the appropriate relation to use for data items and documented identit - + Tammy's owner role with regards to the house on 234 Evergreen Terrace; Walter's owner role with regards to the intellectual property on his movie script A role in a human social process that is based on a social act and whose bearer exercises exclusive control over a property, where this control is permitted by one or more deontic roles, which are parts of the owner role. Mathias Brochhausen @@ -11306,7 +11404,7 @@ edited date: 30 SEPT 2015 - + @@ -11444,7 +11542,7 @@ edited date: 30 SEPT 2015 - + @@ -11690,38 +11788,13 @@ edited date: 30 SEPT 2015 - - - - - - - - - - - - - - - - - - - - - - - - - - - + A role inhering in an entity realized by social interactions in human society. Mathias Brochhausen http://purl.obolibrary.org/obo/omrse.owl Previous definition: A role played by an entity in human social processes. - role in human social processes + obsolete role in human social processes + true @@ -11729,8 +11802,8 @@ edited date: 30 SEPT 2015 - + A role in human social processes that inheres in an organization. William R. Hogan Defined class that we will ultimately move to an application ontology. We are leaving here for now until we determine which application ontology: it is likely going to be an ontology that does not currently (2012-06-05) exist. @@ -11744,8 +11817,8 @@ Ditto for its current descendants. - + A role in human social processes that inheres in an organism. William R. Hogan Mathias Brochhausen @@ -11940,7 +12013,7 @@ Amanda Hicks - + @@ -12266,7 +12339,7 @@ Note: this definition was taken over from "geopolitical organization". - A healthcare provider role that inheres in an organization and is realized by providing inpatient and outpatient care. + A healthcare provider role that inheres in an organization and is realized by providing inpatient care. Mathias Brochhausen hospital role @@ -12784,49 +12857,45 @@ A patient sustaining an injury who has been admitted to the hospital, transferre - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A role in human social processes that, if realized, is realized when the bearer provides labor or services in exchange for a wage or salary as specified by some deontic declaration. Amanda hicks employee @@ -12989,7 +13058,7 @@ last accessed June 30, 2015 - + @@ -13109,11 +13178,11 @@ last accessed June 30, 2015 - + - + @@ -13239,7 +13308,7 @@ last accessed June 30, 2015 - + payer role @@ -14445,6 +14514,14 @@ Somehow involves skilled nursing encounters + + + + + + + A process (1) where the active participant, who at the beginning of the process is located in a healthcare facility, exits the facility and no longer stands in a "located in" relationship to the facility and (2) is immediately preceded by a healthcare encounter in which the active participant also participated. + William R. Hogan leaving a health care facility after receiving care @@ -14851,26 +14928,15 @@ Somehow involves skilled nursing encounters - - - - - - - - - - - - - + A process in which some participant shares some information content entity about some state of that participant with some other participant. S. Clint Dowland Mathias Brochhausen Matthew Diller William R. Hogan The term 'participant' in the definition need not refer to a human agent. - communication + obsolete communication + true @@ -14878,25 +14944,14 @@ Somehow involves skilled nursing encounters - - - - - - - - - - - - - + A disposition inhering in a material entity that, if realized, is realized by that material entity’s communicating via some linguistic concretization. S. Clint Dowland Mathias Brochhausen Matthew Diller William R. Hogan - linguistic competence + obsolete linguistic competence + true @@ -14904,33 +14959,14 @@ Somehow involves skilled nursing encounters - - - - - - - - - - - - - - - - - - - - - + A disposition inhering in a linguistic community that (i) is a maximal aggregate of communicatively compatible linguistic competences, and (ii) if realized, is realized by any and all realizations of those linguistic competences. William R. Hogan Mathias Brochhausen Matthew Diller S. Clint Dowland - language + obsolete language + true @@ -14939,58 +14975,40 @@ Somehow involves skilled nursing encounters - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + - A maximal aggregate of material entities such that each member bears a linguistic competence for the same language. - Matthew Diller - Mathias Brochhausen - S. Clint Dowland - William R. Hogan - linguistic community - - - - - - + + + + + + + + + + + + + + + + + A maximal aggregate of material entities such that each member bears a linguistic competence for the same language. + Matthew Diller + Mathias Brochhausen + S. Clint Dowland + William R. Hogan + linguistic community + + + + + + @@ -15015,7 +15033,8 @@ Somehow involves skilled nursing encounters Mathias Brochhausen Matthew Diller William R. Hogan - expression of preferred language + obsolete expression of preferred language + true @@ -15023,41 +15042,14 @@ Somehow involves skilled nursing encounters - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + An information content entity that (i) is about some person, some language, and some linguistic competence; and (ii) conveys the language with which that person prefers to communicate within some given context. Mathias Brochhausen Matthew Diller S. Clint Dowland William R. Hogan - preferred language information content entity + obsolete preferred language information content entity + true @@ -15065,7 +15057,7 @@ Somehow involves skilled nursing encounters - + a communication in which some participant requests of some other participant an information content entity about some portion of reality S. Clint Dowland As with the parent class, 'participant' in the definition need not refer to a human agent. @@ -15922,7 +15914,7 @@ On the other hand, in the case of those who are self-taught by reading books or - completing a program of eduction + completing a program of education An educating that realizes a concretization of some program of education. William R. Hogan Note that parent class 'educating' and referenced class 'program of education' are defined elsewhere in this education module of OMRSE. @@ -16385,7 +16377,7 @@ On the other hand, in the case of those who are self-taught by reading books or highest level of education socio-economic data item - A socio-economic data item that is about a person and their completion of an education program (and its type), where that education progam is the last one in a sequence (of education programs) that the person has completed, where each education program completed except the last one is a pre-requisite to the education program completed after it. + A socio-economic data item that is about a person and their completion of an education program (and its type), where that education program is the last one in a sequence (of education programs) that the person has completed, where each education program completed except the last one is a pre-requisite to the education program completed after it. William R. Hogan This data item in a typical attribute-value system such as table, XML, JSON takes values like "secondary education", "Associate Degree", "Bachelor Degree", "High School", and so on. highest level of education data item @@ -16419,7 +16411,7 @@ On the other hand, in the case of those who are self-taught by reading books or William R. Hogan http://uis.unesco.org/sites/default/files/documents/international-standard-classification-of-education-isced-2011-en.pdf Vocational education programs are designed for learners to acquire the knowledge, skills and competencies specific to a particular occupation, trade, or class of occupations or trades. Such programs may have work-based components (e.g. apprenticeships, dual-system education programmes). Successful completion of such programs leads to labor market-relevant, vocational qualifications acknowledged as occupationally-oriented by the relevant national authorities and/or the labor market. - vocational education program + vocational education program @@ -16431,9 +16423,9 @@ On the other hand, in the case of those who are self-taught by reading books or kindergarten education plan specification A primary education plan specification that specifies the competencies and information content entities that should be acquired by students in the first year of primary education in the United States. William R. Hogan - kindergarten education program 2020-09-02T12:38:43Z + kindergarten education program @@ -16646,127 +16638,501 @@ It indicates that a person has completed only early childhood education and noth - - - - - An information content entity that is the specified outcome of and documents the sucessful completion of a tertiary education program. - John Judkins - Mathias Brochhausen - Recognized degree awarded after successful completion of a college or post-graduate porgram. - academic degree - - - - - - - - - An academic degree awarded by colleges and universities upon completion of a program of study lasting two years. - John Judkins - Mathias Brochhausen - https://en.wikipedia.org/w/index.php?title=Associate_degree&oldid=723897149 - Recognition awarded after completion of a specific curriculum from an accredited tertiary education provider that falls between high school and bachelor's degree program. - associate degree - - - - - - - - - An academic degree awarded by universities upon completion of a course of study demonstrating a mastery or high-order overview of a specific field of study or area of professional practice.[1] Within the area studied, graduates are posited to possess advanced knowledge of a specialized body of theoretical and applied topics; high order skills in analysis, critical evaluation, or professional application; and the ability to solve complex problems and think rigorously and independently. - John Judkins - Mathias Brochhausen - https://en.wikipedia.org/w/index.php?title=Master%27s_degree&oldid=726036185 - master's degree - - - - - + - - - An academic degree awarded by colleges and universities upon completion of a course of study lasting three to seven years. - John Judkins - Mathias Brochhausen - https://en.wikipedia.org/w/index.php?title=Bachelor%27s_degree&oldid=725713923 - bachelor's degree + + + Examples of monetary forms of payment include: wages, salary, or tips; interest generated by capital; dividends earned; lottery, game, or contest monetary winnings; alimony; royalties; trusts; pensions; receipt of rental payments; unemployment payments; social security payments; worker's compensation; social security payments; or profit from entrepreneurial activities. + A data item that is about the sum of earnings for some person(s) from various forms of payment or profits. + Matthew Diller + Chris Stoeckert + We use the phrase ‘some person’ in the definition because this class can be about an individual's or a household's earnings. Similarly, we use 'personal income' in the label because the term is typically restricted to individuals and households. This class is also restricted to being about monetary forms of income. + monetary personal income data item - + - - - An academic degree in the science and principles of nursing, granted by an accredited tertiary education provider after the successful completion of a bachelor's of nursing program. - John Judkins - Mathias Brochhausen - https://en.wikipedia.org/w/index.php?title=Bachelor_of_Science_in_Nursing&oldid=725962822 - bachelor's of nursing degree + + + + + + + + + + + + + + + + + + + + + + + + + Taking notes on a meeting is an example in which the concretization relation is newly established, since the SDCs that concretize the GDCs come into existence as the notes are written. In contrast, using slides prepared by someone else in order to convey information during a presentation is a case of using a concretization in which the performer neither brings the concretizing SDCs into existence nor is responsible for their standing in the concretization relation to the relevant GDCs. A nonlinguistic example is drawing the logo of one’s favorite brand, in which one creates a pattern that concretizes a GDC that is also concretized by patterns on products of the brand. + Process in which some participant utilizes some specifically dependent continuant as a concretization of some generically dependent continuant. + S. Clint Dowland + Matthew Diller + Sarah Bost + William R. Hogan + Instances include any process that brings it about that some specifically dependent continuant begins to stand in a concretization relation to some generically dependent continuant, as well as any process in which someone makes use of a pre-established concretization relation. To be clear, instances do not include using concretizations of words or letters for purposes that do not make use of the concretization relations in which they stand (for example, hanging up a sign in a foreign language as a decoration because one likes the colors, despite having no idea what the sign says). + Instances include, but are not limited to, processes that bring about cognitive concretizations. + concretization-utilization process - + - - - An academic degree in the science and principles of nursing, granted by an accredited tertiary education provider after the successful completion of a master's of nursing program. - John Judkins - Mathias Brochhausen - An advanced academic degree in the principles and practices of nursing, with a focus on administration, education, or advanced nursing practice, granted by an accredited college or university after the successful completion of a master's of nursing program. - master's in the science of nursing degree + + + + + + + + + + + + + + + + + + + A concretization-utilization process in which the utilized specifically dependent continuant concretizes the generically dependent through use of some language. + S. Clint Dowland + Matthew Diller + Sarah Dowland + William R. Hogan + linguistic concretization-utilization process - + - - - morphology - A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure. - - morphology + + + + + + + + + + + + + + + For example, reading a text message that says, “It is raining outside,” and inferring that the words on the screen are meant to convey information about the weather. The pattern on the screen that corresponds to the words is the SDC, and the ICE about the rain is the GDC. Or, hearing your spouse say, “Can you come to the kitchen?” and then knowing that your spouse wants you to come to the kitchen. You have interpreted the patterns of the sound as concretizing a GDC about what your spouse wants. Or, seeing a drawing of a basketball player and inferring—perhaps incorrectly—that it is of Michael Jordan. + Process in which some participant infers that some particular specifically dependent continuant stands in the concretization relation to some particular generically dependent continuant. + S. Clint Dowland + Matthew Diller + Sarah Bost + William R. Hogan + The interpretation need not be accurate. It may even be the case that the specifically dependent continuant has not previously concretized anything. + concretization-interpretation process - + - - - length - A 1-D extent quality which is equal to the distance between two points. - - length + + + + + + + + + + + + + + + + + + + A concretization-interpretation process in which the specifically dependent continuant is inferred to concretize the generically dependent continuant in a way that makes use of some language. + S. Clint Dowland + Matthew Diller + Sarah Bost + William R. Hogan + linguistic concretization-interpretation process - + - - - mass - A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter. - - mass + + + + + + + + + + + + + + + + + + + + + + A disposition that inheres in some material entity and is such that that, if realized, it is realized by either some linguistic concretization-utilization process or some linguistic concretization-interpretation process. + S. Clint Dowland + Mathias Brochhausen + Matthew Diller + William R. Hogan + When realized in a concretization-utilization process, the only relevant concretization may in some cases be a cognitive one, but that suffices to realize a linguistic competence. For example, suppose one begins to write a letter, planning out the words ahead of time, but is interrupted before beginning to write and never resumes. During the process of planning out the words and what one intends to communicate, one is already concretizing words cognitively, as well as considering which combinations of words one can use to concretize additional generically dependent continuants. In doing so, one performs processes that realize one's linguistic competence, without producing any concretizations other than those cognitive ones. + linguistic competence - + - - - physical quality - A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities. + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A process in which some participant shares some generically dependent continuant with some other participant. The former utilizes some specifically dependent continuant that concretizes the generically dependent continuant intended to be shared, while the latter interprets that specifically dependent continuant to concretize some particular generically dependent continuant, aiming to accurately infer the other participant’s intent. + S. Clint Dowland + Mathias Brochhausen + Matthew Diller + William R. Hogan + For example, if you tell someone, “It is raining,” you produce sounds that have patterns that concretize information about the weather. Your utilization of that concretization is part of the communication. When the other person hears you, they interpret those patterns to concretize something, which may or may not be the same as what you intended to convey. In other words, they interpret the sounds you produce to have meanings associated with them, and that interpretation process is another part of the communication. If a process does not have a part of each type, it is not a communication. + The interpretation need not correspond exactly to what was intended by the other participant. + The term 'participant' in the definition need not refer to a human agent. + communication + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A disposition that (i) is an aggregate of linguistic competences, considered as forming a distinct group on the basis of perceived common characteristics, such as mutual intelligibility among their bearers, in addition to historical or cultural factors; (ii) if realized, is realized in any and all realizations of those linguistic competences; and (iii) inheres in a linguistic community. + William R. Hogan + Mathias Brochhausen + Matthew Diller + S. Clint Dowland + language + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A communication in which some participant states a preference for some communicative process to be in a certain language, via some concretization of some preferred language information content entity. + S. Clint Dowland + Mathias Brochhausen + Matthew Diller + William R. Hogan + disclosure of preferred language + + + + + + + + + + + + + + + + + + + + + An information content entity that is about some person and some language, and that conveys the language with which that person prefers to communicate within some given context. + Mathias Brochhausen + Matthew Diller + S. Clint Dowland + William R. Hogan + preferred language information content entity + + + + + + + + + + + + + + + A role inhering in an entity realized by social interactions in human society. + Matthew Diller + Mathias Brochhausen + Previous definition: A role played by an entity in human social processes. + role in human social processes + + + + + + + + + An information content entity that is the specified outcome of and documents the sucessful completion of a tertiary education program. + John Judkins + Mathias Brochhausen + Recognized degree awarded after successful completion of a college or post-graduate porgram. + academic degree + + + + + + + + + An academic degree awarded by colleges and universities upon completion of a program of study lasting two years. + John Judkins + Mathias Brochhausen + https://en.wikipedia.org/w/index.php?title=Associate_degree&oldid=723897149 + Recognition awarded after completion of a specific curriculum from an accredited tertiary education provider that falls between high school and bachelor's degree program. + associate degree + + + + + + + + + An academic degree awarded by universities upon completion of a course of study demonstrating a mastery or high-order overview of a specific field of study or area of professional practice.[1] Within the area studied, graduates are posited to possess advanced knowledge of a specialized body of theoretical and applied topics; high order skills in analysis, critical evaluation, or professional application; and the ability to solve complex problems and think rigorously and independently. + John Judkins + Mathias Brochhausen + https://en.wikipedia.org/w/index.php?title=Master%27s_degree&oldid=726036185 + master's degree + + + + + + + + + An academic degree awarded by colleges and universities upon completion of a course of study lasting three to seven years. + John Judkins + Mathias Brochhausen + https://en.wikipedia.org/w/index.php?title=Bachelor%27s_degree&oldid=725713923 + bachelor's degree + + + + + + + + + An academic degree in the science and principles of nursing, granted by an accredited tertiary education provider after the successful completion of a bachelor's of nursing program. + John Judkins + Mathias Brochhausen + https://en.wikipedia.org/w/index.php?title=Bachelor_of_Science_in_Nursing&oldid=725962822 + bachelor's of nursing degree + + + + + + + + + An academic degree in the science and principles of nursing, granted by an accredited tertiary education provider after the successful completion of a master's of nursing program. + John Judkins + Mathias Brochhausen + An advanced academic degree in the principles and practices of nursing, with a focus on administration, education, or advanced nursing practice, granted by an accredited college or university after the successful completion of a master's of nursing program. + master's in the science of nursing degree + + + + + + + + + quality (PATO) + quality + + + + + + + + + morphology + A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure. + + morphology + + + + + + + + + length + A 1-D extent quality which is equal to the distance between two points. + + length + + + + + + + + + mass + A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter. + + mass + + + + + + + + + physical quality + A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities. physical quality @@ -17244,6 +17610,12 @@ It indicates that a person has completed only early childhood education and noth + + + + + + @@ -17289,13 +17661,22 @@ It indicates that a person has completed only early childhood education and noth - + + + + + + + + + + - + - + @@ -17353,6 +17734,178 @@ It indicates that a person has completed only early childhood education and noth + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + true MF(X)-directly_regulates->MF(Y)-enabled_by->GP(Z) => MF(Y)-has_input->GP(Y) e.g. if 'protein kinase activity'(X) directly_regulates 'protein binding activity (Y)and this is enabled by GP(Z) then X has_input Z @@ -17611,51 +18164,6 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - This rule is dubious: added as a quick fix for expected inference in GO-CAM. The problem is most acute for transmembrane proteins, such as receptors or cell adhesion molecules, which have some subfunctions inside the cell (e.g. kinase activity) and some subfunctions outside (e.g. ligand binding). Correct annotation of where these functions occurs leads to incorrect inference about the location of the whole protein. This should probably be weakened to "... -> overlaps" - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - If a molecular function (X) has a regulatory subfunction, then any gene product which is an input to that subfunction has an activity that directly_regulates X. Note: this is intended for cases where the regaultory subfunction is protein binding, so it could be tightened with an additional clause to specify this. inferring direct reg edge from input to regulatory subfunction @@ -18256,6 +18764,94 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/omrse.json b/omrse.json index 7563530..f9e0012 100644 --- a/omrse.json +++ b/omrse.json @@ -24,6 +24,11 @@ "pred": "http://purl.obolibrary.org/obo/BFO_0000050", "sub": "http://purl.obolibrary.org/obo/BFO_0000017" }, + { + "obj": "http://purl.obolibrary.org/obo/BFO_0000019", + "pred": "http://purl.obolibrary.org/obo/BFO_0000050", + "sub": "http://purl.obolibrary.org/obo/BFO_0000019" + }, { "obj": "http://purl.obolibrary.org/obo/BFO_0000020", "pred": "http://purl.obolibrary.org/obo/BFO_0000050", @@ -44,6 +49,11 @@ "pred": "http://purl.obolibrary.org/obo/RO_0000052", "sub": "http://purl.obolibrary.org/obo/OMRSE_00000048" }, + { + "obj": "http://purl.obolibrary.org/obo/BFO_0000040", + "pred": "http://purl.obolibrary.org/obo/RO_0000052", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002072" + }, { "obj": "http://purl.obolibrary.org/obo/NCBITaxon_9606", "pred": "http://purl.obolibrary.org/obo/RO_0000052", @@ -193,6 +203,15 @@ "http://purl.obolibrary.org/obo/BFO_0000002" ] }, + { + "domainClassIds": [ + "http://purl.obolibrary.org/obo/BFO_0000003" + ], + "predicateId": "http://purl.obolibrary.org/obo/RO_0002012", + "rangeClassIds": [ + "http://purl.obolibrary.org/obo/BFO_0000003" + ] + }, { "domainClassIds": [ "http://purl.obolibrary.org/obo/BFO_0000003" @@ -328,6 +347,15 @@ "http://purl.obolibrary.org/obo/BFO_0000015" ] }, + { + "domainClassIds": [ + "http://purl.obolibrary.org/obo/BFO_0000015" + ], + "predicateId": "http://purl.obolibrary.org/obo/RO_0019000", + "rangeClassIds": [ + "http://purl.obolibrary.org/obo/PATO_0000001" + ] + }, { "domainClassIds": [ "http://purl.obolibrary.org/obo/BFO_0000017" @@ -713,7 +741,17 @@ { "obj": "http://purl.obolibrary.org/obo/BFO_0000015", "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000192" + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002062" + }, + { + "obj": "http://purl.obolibrary.org/obo/BFO_0000015", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002064" + }, + { + "obj": "http://purl.obolibrary.org/obo/BFO_0000015", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002068" }, { "obj": "http://purl.obolibrary.org/obo/BFO_0000016", @@ -723,17 +761,17 @@ { "obj": "http://purl.obolibrary.org/obo/BFO_0000016", "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000193" + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002058" }, { "obj": "http://purl.obolibrary.org/obo/BFO_0000016", "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000194" + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002066" }, { "obj": "http://purl.obolibrary.org/obo/BFO_0000016", "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00002058" + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002069" }, { "obj": "http://purl.obolibrary.org/obo/BFO_0000017", @@ -785,6 +823,11 @@ "pred": "is_a", "sub": "http://purl.org/obo/owl/PATO#PATO_0001025" }, + { + "obj": "http://purl.obolibrary.org/obo/BFO_0000020", + "pred": "http://purl.obolibrary.org/obo/RO_0000057", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002064" + }, { "obj": "http://purl.obolibrary.org/obo/BFO_0000020", "pred": "is_a", @@ -795,6 +838,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/BFO_0000019" }, + { + "obj": "http://purl.obolibrary.org/obo/BFO_0000020", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/PATO_0000001" + }, { "obj": "http://purl.obolibrary.org/obo/BFO_0000023", "pred": "is_a", @@ -825,11 +873,6 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/IAO_0021031" }, - { - "obj": "http://purl.obolibrary.org/obo/BFO_0000023", - "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000024" - }, { "obj": "http://purl.obolibrary.org/obo/BFO_0000023", "pred": "is_a", @@ -955,6 +998,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/OMRSE_00000097" }, + { + "obj": "http://purl.obolibrary.org/obo/BFO_0000040", + "pred": "http://purl.obolibrary.org/obo/IAO_0000136", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002071" + }, { "obj": "http://purl.obolibrary.org/obo/BFO_0000040", "pred": "http://purl.obolibrary.org/obo/OBI_0000299", @@ -968,12 +1016,22 @@ { "obj": "http://purl.obolibrary.org/obo/BFO_0000040", "pred": "http://purl.obolibrary.org/obo/RO_0000052", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000193" + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002066" }, { "obj": "http://purl.obolibrary.org/obo/BFO_0000040", "pred": "http://purl.obolibrary.org/obo/RO_0000057", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000192" + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002062" + }, + { + "obj": "http://purl.obolibrary.org/obo/BFO_0000040", + "pred": "http://purl.obolibrary.org/obo/RO_0000057", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002064" + }, + { + "obj": "http://purl.obolibrary.org/obo/BFO_0000040", + "pred": "http://purl.obolibrary.org/obo/RO_0000057", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002068" }, { "obj": "http://purl.obolibrary.org/obo/BFO_0000040", @@ -1045,6 +1103,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/RO_0002577" }, + { + "obj": "http://purl.obolibrary.org/obo/BFO_0000050", + "pred": "subPropertyOf", + "sub": "http://purl.obolibrary.org/obo/RO_0002012" + }, { "obj": "http://purl.obolibrary.org/obo/BFO_0000050", "pred": "subPropertyOf", @@ -1223,7 +1286,7 @@ { "obj": "http://purl.obolibrary.org/obo/GO_0008150", "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/GO_0050896" + "sub": "http://purl.obolibrary.org/obo/GO_0007610" }, { "obj": "http://purl.obolibrary.org/obo/GO_0016740", @@ -1235,11 +1298,6 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/GO_0016301" }, - { - "obj": "http://purl.obolibrary.org/obo/GO_0050896", - "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/GO_0007610" - }, { "obj": "http://purl.obolibrary.org/obo/IAO_0000001", "pred": "is_a", @@ -1370,6 +1428,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/OMRSE_00000506" }, + { + "obj": "http://purl.obolibrary.org/obo/IAO_0000027", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002061" + }, { "obj": "http://purl.obolibrary.org/obo/IAO_0000028", "pred": "is_a", @@ -1435,11 +1498,6 @@ "pred": "http://purl.obolibrary.org/obo/OBI_0000299", "sub": "http://purl.obolibrary.org/obo/IAO_0000650" }, - { - "obj": "http://purl.obolibrary.org/obo/IAO_0000030", - "pred": "http://purl.obolibrary.org/obo/RO_0000057", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000192" - }, { "obj": "http://purl.obolibrary.org/obo/IAO_0000030", "pred": "http://purl.obolibrary.org/obo/RO_0000059", @@ -1543,17 +1601,17 @@ { "obj": "http://purl.obolibrary.org/obo/IAO_0000030", "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000197" + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000204" }, { "obj": "http://purl.obolibrary.org/obo/IAO_0000030", "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000204" + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000221" }, { "obj": "http://purl.obolibrary.org/obo/IAO_0000030", "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000221" + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002071" }, { "obj": "http://purl.obolibrary.org/obo/IAO_0000030", @@ -3115,6 +3173,11 @@ "pred": "http://purl.obolibrary.org/obo/BFO_0000054", "sub": "http://purl.obolibrary.org/obo/OMRSE_00000172" }, + { + "obj": "http://purl.obolibrary.org/obo/OGMS_0000097", + "pred": "http://purl.obolibrary.org/obo/RO_0002087", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000161" + }, { "obj": "http://purl.obolibrary.org/obo/OGMS_0000097", "pred": "is_a", @@ -3320,51 +3383,6 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/PCO_0000020" }, - { - "obj": "http://purl.obolibrary.org/obo/OMRSE_00000024", - "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/IAO_0020027" - }, - { - "obj": "http://purl.obolibrary.org/obo/OMRSE_00000024", - "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000002" - }, - { - "obj": "http://purl.obolibrary.org/obo/OMRSE_00000024", - "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000010" - }, - { - "obj": "http://purl.obolibrary.org/obo/OMRSE_00000024", - "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000025" - }, - { - "obj": "http://purl.obolibrary.org/obo/OMRSE_00000024", - "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000026" - }, - { - "obj": "http://purl.obolibrary.org/obo/OMRSE_00000024", - "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000038" - }, - { - "obj": "http://purl.obolibrary.org/obo/OMRSE_00000024", - "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000087" - }, - { - "obj": "http://purl.obolibrary.org/obo/OMRSE_00000024", - "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000092" - }, - { - "obj": "http://purl.obolibrary.org/obo/OMRSE_00000024", - "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000095" - }, { "obj": "http://purl.obolibrary.org/obo/OMRSE_00000025", "pred": "is_a", @@ -3410,6 +3428,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/OMRSE_00000051" }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00000048", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002072" + }, { "obj": "http://purl.obolibrary.org/obo/OMRSE_00000049", "pred": "is_a", @@ -3990,41 +4013,11 @@ "pred": "http://purl.obolibrary.org/obo/RO_0002350", "sub": "http://purl.obolibrary.org/obo/OMRSE_00000190" }, - { - "obj": "http://purl.obolibrary.org/obo/OMRSE_00000192", - "pred": "http://purl.obolibrary.org/obo/BFO_0000054", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000193" - }, - { - "obj": "http://purl.obolibrary.org/obo/OMRSE_00000192", - "pred": "http://purl.obolibrary.org/obo/BFO_0000054", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000194" - }, { "obj": "http://purl.obolibrary.org/obo/OMRSE_00000192", "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/OMRSE_00000196" }, - { - "obj": "http://purl.obolibrary.org/obo/OMRSE_00000192", - "pred": "is_a", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000198" - }, - { - "obj": "http://purl.obolibrary.org/obo/OMRSE_00000193", - "pred": "http://purl.obolibrary.org/obo/IAO_0000136", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000197" - }, - { - "obj": "http://purl.obolibrary.org/obo/OMRSE_00000194", - "pred": "http://purl.obolibrary.org/obo/IAO_0000136", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000197" - }, - { - "obj": "http://purl.obolibrary.org/obo/OMRSE_00000194", - "pred": "http://purl.obolibrary.org/obo/RO_0000053", - "sub": "http://purl.obolibrary.org/obo/OMRSE_00000195" - }, { "obj": "http://purl.obolibrary.org/obo/OMRSE_00000198", "pred": "is_a", @@ -4320,6 +4313,86 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/OMRSE_00002057" }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00002062", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002063" + }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00002064", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002065" + }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00002068", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000198" + }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00002068", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002070" + }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00002069", + "pred": "http://purl.obolibrary.org/obo/IAO_0000136", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00002071" + }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00002069", + "pred": "http://purl.obolibrary.org/obo/RO_0000053", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000195" + }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00002072", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/IAO_0020027" + }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00002072", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000002" + }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00002072", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000010" + }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00002072", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000025" + }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00002072", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000026" + }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00002072", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000038" + }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00002072", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000077" + }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00002072", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000087" + }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00002072", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000092" + }, + { + "obj": "http://purl.obolibrary.org/obo/OMRSE_00002072", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000095" + }, { "obj": "http://purl.obolibrary.org/obo/OOSTT_00000074", "pred": "http://purl.obolibrary.org/obo/OBI_0000299", @@ -4865,6 +4938,11 @@ "pred": "subPropertyOf", "sub": "http://purl.obolibrary.org/obo/RO_0009501" }, + { + "obj": "http://purl.obolibrary.org/obo/RO_0002410", + "pred": "subPropertyOf", + "sub": "http://purl.obolibrary.org/obo/RO_0019000" + }, { "obj": "http://purl.obolibrary.org/obo/RO_0002411", "pred": "inverseOf", @@ -4900,6 +4978,11 @@ "pred": "subPropertyOf", "sub": "http://purl.obolibrary.org/obo/RO_0002578" }, + { + "obj": "http://purl.obolibrary.org/obo/RO_0002418", + "pred": "subPropertyOf", + "sub": "http://purl.obolibrary.org/obo/RO_0002012" + }, { "obj": "http://purl.obolibrary.org/obo/RO_0002418", "pred": "subPropertyOf", @@ -5135,6 +5218,16 @@ "pred": "subPropertyOf", "sub": "http://purl.obolibrary.org/obo/RO_0002448" }, + { + "obj": "http://purl.obolibrary.org/obo/RO_0019000", + "pred": "subPropertyOf", + "sub": "http://purl.obolibrary.org/obo/RO_0019001" + }, + { + "obj": "http://purl.obolibrary.org/obo/RO_0019000", + "pred": "subPropertyOf", + "sub": "http://purl.obolibrary.org/obo/RO_0019002" + }, { "obj": "http://purl.obolibrary.org/obo/UO_0000001", "pred": "http://purl.obolibrary.org/obo/IAO_0000039", @@ -5310,6 +5403,11 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/OMRSE_00000018" }, + { + "obj": "http://www.geneontology.org/formats/oboInOwl#ObsoleteClass", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000024" + }, { "obj": "http://www.geneontology.org/formats/oboInOwl#ObsoleteClass", "pred": "is_a", @@ -5395,6 +5493,26 @@ "pred": "is_a", "sub": "http://purl.obolibrary.org/obo/OMRSE_00000168" }, + { + "obj": "http://www.geneontology.org/formats/oboInOwl#ObsoleteClass", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000192" + }, + { + "obj": "http://www.geneontology.org/formats/oboInOwl#ObsoleteClass", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000193" + }, + { + "obj": "http://www.geneontology.org/formats/oboInOwl#ObsoleteClass", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000194" + }, + { + "obj": "http://www.geneontology.org/formats/oboInOwl#ObsoleteClass", + "pred": "is_a", + "sub": "http://purl.obolibrary.org/obo/OMRSE_00000197" + }, { "obj": "http://www.geneontology.org/formats/oboInOwl#ObsoleteClass", "pred": "is_a", @@ -5985,11 +6103,11 @@ }, { "pred": "http://www.w3.org/2002/07/owl#versionInfo", - "val": "2021-08-30" + "val": "2022-04-06" } ], "subsets": [], - "version": "http://purl.obolibrary.org/obo/omrse/releases/2021-08-30/omrse.json", + "version": "http://purl.obolibrary.org/obo/omrse/releases/2022-04-06/omrse.json", "xrefs": [] }, "nodes": [ @@ -7858,7 +7976,11 @@ }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", - "val": "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" + "val": "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/" + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000116", + "val": "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", @@ -7959,6 +8081,10 @@ "pred": "http://purl.obolibrary.org/obo/IAO_0000116", "val": "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part." }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000116", + "val": "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/" + }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", "val": "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" @@ -19889,7 +20015,7 @@ }, { "id": "http://purl.obolibrary.org/obo/OMRSE_00000024", - "lbl": "role in human social processes", + "lbl": "obsolete role in human social processes", "meta": { "basicPropertyValues": [ { @@ -19907,7 +20033,8 @@ "definition": { "val": "A role inhering in an entity realized by social interactions in human society.", "xrefs": [] - } + }, + "deprecated": true }, "type": "CLASS" }, @@ -20461,7 +20588,7 @@ } ], "definition": { - "val": "A healthcare provider role that inheres in an organization and is realized by providing inpatient and outpatient care.", + "val": "A healthcare provider role that inheres in an organization and is realized by providing inpatient care.", "xrefs": [] } }, @@ -21837,6 +21964,23 @@ }, "type": "CLASS" }, + { + "id": "http://purl.obolibrary.org/obo/OMRSE_00000161", + "lbl": "leaving a health care facility after receiving care", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "William R. Hogan" + } + ], + "definition": { + "val": "A process (1) where the active participant, who at the beginning of the process is located in a healthcare facility, exits the facility and no longer stands in a \"located in\" relationship to the facility and (2) is immediately preceded by a healthcare encounter in which the active participant also participated.", + "xrefs": [] + } + }, + "type": "CLASS" + }, { "id": "http://purl.obolibrary.org/obo/OMRSE_00000162", "lbl": "obsolete medical advice", @@ -22098,7 +22242,7 @@ }, { "id": "http://purl.obolibrary.org/obo/OMRSE_00000192", - "lbl": "communication", + "lbl": "obsolete communication", "meta": { "basicPropertyValues": [ { @@ -22124,13 +22268,14 @@ "definition": { "val": "A process in which some participant shares some information content entity about some state of that participant with some other participant.", "xrefs": [] - } + }, + "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/OMRSE_00000193", - "lbl": "linguistic competence", + "lbl": "obsolete linguistic competence", "meta": { "basicPropertyValues": [ { @@ -22153,13 +22298,14 @@ "definition": { "val": "A disposition inhering in a material entity that, if realized, is realized by that material entity’s communicating via some linguistic concretization.", "xrefs": [] - } + }, + "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/OMRSE_00000194", - "lbl": "language", + "lbl": "obsolete language", "meta": { "basicPropertyValues": [ { @@ -22182,7 +22328,8 @@ "definition": { "val": "A disposition inhering in a linguistic community that (i) is a maximal aggregate of communicatively compatible linguistic competences, and (ii) if realized, is realized by any and all realizations of those linguistic competences.", "xrefs": [] - } + }, + "deprecated": true }, "type": "CLASS" }, @@ -22217,7 +22364,7 @@ }, { "id": "http://purl.obolibrary.org/obo/OMRSE_00000196", - "lbl": "expression of preferred language", + "lbl": "obsolete expression of preferred language", "meta": { "basicPropertyValues": [ { @@ -22240,13 +22387,14 @@ "definition": { "val": "A communication in which some participant states a preference for some communicative process to be in a certain language, and that has a concretization of a preferred language information content entity as its specified output.", "xrefs": [] - } + }, + "deprecated": true }, "type": "CLASS" }, { "id": "http://purl.obolibrary.org/obo/OMRSE_00000197", - "lbl": "preferred language information content entity", + "lbl": "obsolete preferred language information content entity", "meta": { "basicPropertyValues": [ { @@ -22269,7 +22417,8 @@ "definition": { "val": "An information content entity that (i) is about some person, some language, and some linguistic competence; and (ii) conveys the language with which that person prefers to communicate within some given context.", "xrefs": [] - } + }, + "deprecated": true }, "type": "CLASS" }, @@ -23721,7 +23870,7 @@ "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000111", - "val": "completing a program of eduction" + "val": "completing a program of education" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000117", @@ -24100,7 +24249,64 @@ "This data item in a typical attribute-value system such as table, XML, JSON takes values like \"secondary education\", \"Associate Degree\", \"Bachelor Degree\", \"High School\", and so on." ], "definition": { - "val": "A socio-economic data item that is about a person and their completion of an education program (and its type), where that education progam is the last one in a sequence (of education programs) that the person has completed, where each education program completed except the last one is a pre-requisite to the education program completed after it.", + "val": "A socio-economic data item that is about a person and their completion of an education program (and its type), where that education program is the last one in a sequence (of education programs) that the person has completed, where each education program completed except the last one is a pre-requisite to the education program completed after it.", + "xrefs": [] + } + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/OMRSE_00002046", + "lbl": "vocational education program", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000111", + "val": "vocational education plan specification" + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "William R. Hogan" + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000119", + "val": "http://uis.unesco.org/sites/default/files/documents/international-standard-classification-of-education-isced-2011-en.pdf" + } + ], + "comments": [ + "Vocational education programs are designed for learners to acquire the knowledge, skills and competencies specific to a particular occupation, trade, or class of occupations or trades. Such programs may have work-based components (e.g. apprenticeships, dual-system education programmes). Successful completion of such programs leads to labor market-relevant, vocational qualifications acknowledged as occupationally-oriented by the relevant national authorities and/or the labor market." + ], + "definition": { + "val": "An educational plan specification that has a vocational objective specification as part.", + "xrefs": [] + } + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/OMRSE_00002047", + "lbl": "kindergarten education program", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000111", + "val": "kindergarten education plan specification" + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "William R. Hogan" + }, + { + "pred": "http://purl.org/dc/elements/1.1/creator", + "val": "http://orcid.org/0000-0002-9881-1017" + }, + { + "pred": "http://purl.org/dc/elements/1.1/date", + "val": "2020-09-02T12:38:43Z" + } + ], + "definition": { + "val": "A primary education plan specification that specifies the competencies and information content entities that should be acquired by students in the first year of primary education in the United States.", "xrefs": [] } }, @@ -24536,196 +24742,545 @@ "type": "CLASS" }, { - "id": "http://purl.obolibrary.org/obo/OOSTT_00000030", - "lbl": "OOSTT user-centered description", + "id": "http://purl.obolibrary.org/obo/OMRSE_00002061", + "lbl": "monetary personal income data item", "meta": { "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000112", + "val": "Examples of monetary forms of payment include: wages, salary, or tips; interest generated by capital; dividends earned; lottery, game, or contest monetary winnings; alimony; royalties; trusts; pensions; receipt of rental payments; unemployment payments; social security payments; worker's compensation; social security payments; or profit from entrepreneurial activities." + }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000117", - "val": "Mathias Brochhausen" + "val": "Matthew Diller" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Chris Stoeckert" } - ] + ], + "comments": [ + "We use the phrase ‘some person’ in the definition because this class can be about an individual's or a household's earnings. Similarly, we use 'personal income' in the label because the term is typically restricted to individuals and households. This class is also restricted to being about monetary forms of income." + ], + "definition": { + "val": "A data item that is about the sum of earnings for some person(s) from various forms of payment or profits.", + "xrefs": [] + } }, - "type": "PROPERTY" + "type": "CLASS" }, { - "id": "http://purl.obolibrary.org/obo/OOSTT_00000074", - "lbl": "academic degree", + "id": "http://purl.obolibrary.org/obo/OMRSE_00002062", + "lbl": "concretization-utilization process", "meta": { "basicPropertyValues": [ { - "pred": "http://purl.obolibrary.org/obo/IAO_0000117", - "val": "John Judkins" + "pred": "http://purl.obolibrary.org/obo/IAO_0000112", + "val": "Taking notes on a meeting is an example in which the concretization relation is newly established, since the SDCs that concretize the GDCs come into existence as the notes are written. In contrast, using slides prepared by someone else in order to convey information during a presentation is a case of using a concretization in which the performer neither brings the concretizing SDCs into existence nor is responsible for their standing in the concretization relation to the relevant GDCs. A nonlinguistic example is drawing the logo of one’s favorite brand, in which one creates a pattern that concretizes a GDC that is also concretized by patterns on products of the brand." }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000117", - "val": "Mathias Brochhausen" + "val": "S. Clint Dowland" }, { - "pred": "http://purl.obolibrary.org/obo/OOSTT_00000030", - "val": "Recognized degree awarded after successful completion of a college or post-graduate porgram." + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Matthew Diller" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Sarah Bost" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "William R. Hogan" } ], + "comments": [ + "Instances include any process that brings it about that some specifically dependent continuant begins to stand in a concretization relation to some generically dependent continuant, as well as any process in which someone makes use of a pre-established concretization relation. To be clear, instances do not include using concretizations of words or letters for purposes that do not make use of the concretization relations in which they stand (for example, hanging up a sign in a foreign language as a decoration because one likes the colors, despite having no idea what the sign says).", + "Instances include, but are not limited to, processes that bring about cognitive concretizations." + ], "definition": { - "val": "An information content entity that is the specified outcome of and documents the sucessful completion of a tertiary education program.", + "val": "Process in which some participant utilizes some specifically dependent continuant as a concretization of some generically dependent continuant.", "xrefs": [] } }, "type": "CLASS" }, { - "id": "http://purl.obolibrary.org/obo/OOSTT_00000081", - "lbl": "associate degree", + "id": "http://purl.obolibrary.org/obo/OMRSE_00002063", + "lbl": "linguistic concretization-utilization process", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000117", - "val": "John Judkins" + "val": "S. Clint Dowland" }, { - "pred": "http://purl.obolibrary.org/obo/IAO_0000117", - "val": "Mathias Brochhausen" + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Matthew Diller" }, { - "pred": "http://purl.obolibrary.org/obo/IAO_0000119", - "val": "https://en.wikipedia.org/w/index.php?title=Associate_degree&oldid=723897149" + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Sarah Dowland" }, { - "pred": "http://purl.obolibrary.org/obo/OOSTT_00000030", - "val": "Recognition awarded after completion of a specific curriculum from an accredited tertiary education provider that falls between high school and bachelor's degree program." + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "William R. Hogan" } ], "definition": { - "val": "An academic degree awarded by colleges and universities upon completion of a program of study lasting two years.", + "val": "A concretization-utilization process in which the utilized specifically dependent continuant concretizes the generically dependent through use of some language.", "xrefs": [] } }, "type": "CLASS" }, { - "id": "http://purl.obolibrary.org/obo/OOSTT_00000082", - "lbl": "master's degree", + "id": "http://purl.obolibrary.org/obo/OMRSE_00002064", + "lbl": "concretization-interpretation process", "meta": { "basicPropertyValues": [ { - "pred": "http://purl.obolibrary.org/obo/IAO_0000117", - "val": "John Judkins" + "pred": "http://purl.obolibrary.org/obo/IAO_0000112", + "val": "For example, reading a text message that says, “It is raining outside,” and inferring that the words on the screen are meant to convey information about the weather. The pattern on the screen that corresponds to the words is the SDC, and the ICE about the rain is the GDC. Or, hearing your spouse say, “Can you come to the kitchen?” and then knowing that your spouse wants you to come to the kitchen. You have interpreted the patterns of the sound as concretizing a GDC about what your spouse wants. Or, seeing a drawing of a basketball player and inferring—perhaps incorrectly—that it is of Michael Jordan." }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000117", - "val": "Mathias Brochhausen" + "val": "S. Clint Dowland" }, { - "pred": "http://purl.obolibrary.org/obo/IAO_0000119", - "val": "https://en.wikipedia.org/w/index.php?title=Master%27s_degree&oldid=726036185" + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Matthew Diller" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Sarah Bost" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "William R. Hogan" } ], + "comments": [ + "The interpretation need not be accurate. It may even be the case that the specifically dependent continuant has not previously concretized anything." + ], "definition": { - "val": "An academic degree awarded by universities upon completion of a course of study demonstrating a mastery or high-order overview of a specific field of study or area of professional practice.[1] Within the area studied, graduates are posited to possess advanced knowledge of a specialized body of theoretical and applied topics; high order skills in analysis, critical evaluation, or professional application; and the ability to solve complex problems and think rigorously and independently.", + "val": "Process in which some participant infers that some particular specifically dependent continuant stands in the concretization relation to some particular generically dependent continuant.", "xrefs": [] } }, "type": "CLASS" }, { - "id": "http://purl.obolibrary.org/obo/OOSTT_00000083", - "lbl": "bachelor's degree", + "id": "http://purl.obolibrary.org/obo/OMRSE_00002065", + "lbl": "linguistic concretization-interpretation process", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000117", - "val": "John Judkins" + "val": "S. Clint Dowland" }, { - "pred": "http://purl.obolibrary.org/obo/IAO_0000117", - "val": "Mathias Brochhausen" + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Matthew Diller" }, { - "pred": "http://purl.obolibrary.org/obo/IAO_0000119", - "val": "https://en.wikipedia.org/w/index.php?title=Bachelor%27s_degree&oldid=725713923" + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Sarah Bost" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "William R. Hogan" } ], "definition": { - "val": "An academic degree awarded by colleges and universities upon completion of a course of study lasting three to seven years.", + "val": "A concretization-interpretation process in which the specifically dependent continuant is inferred to concretize the generically dependent continuant in a way that makes use of some language.", "xrefs": [] } }, "type": "CLASS" }, { - "id": "http://purl.obolibrary.org/obo/OOSTT_00000084", - "lbl": "bachelor's of nursing degree", + "id": "http://purl.obolibrary.org/obo/OMRSE_00002066", + "lbl": "linguistic competence", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000117", - "val": "John Judkins" + "val": "S. Clint Dowland" }, { - "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "pred": "http://purl.org/dc/elements/1.1/contributor", "val": "Mathias Brochhausen" }, { - "pred": "http://purl.obolibrary.org/obo/IAO_0000119", - "val": "https://en.wikipedia.org/w/index.php?title=Bachelor_of_Science_in_Nursing&oldid=725962822" + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Matthew Diller" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "William R. Hogan" } ], + "comments": [ + "When realized in a concretization-utilization process, the only relevant concretization may in some cases be a cognitive one, but that suffices to realize a linguistic competence. For example, suppose one begins to write a letter, planning out the words ahead of time, but is interrupted before beginning to write and never resumes. During the process of planning out the words and what one intends to communicate, one is already concretizing words cognitively, as well as considering which combinations of words one can use to concretize additional generically dependent continuants. In doing so, one performs processes that realize one's linguistic competence, without producing any concretizations other than those cognitive ones." + ], "definition": { - "val": "An academic degree in the science and principles of nursing, granted by an accredited tertiary education provider after the successful completion of a bachelor's of nursing program.", + "val": "A disposition that inheres in some material entity and is such that that, if realized, it is realized by either some linguistic concretization-utilization process or some linguistic concretization-interpretation process.", "xrefs": [] } }, "type": "CLASS" }, { - "id": "http://purl.obolibrary.org/obo/OOSTT_00000086", - "lbl": "master's in the science of nursing degree", + "id": "http://purl.obolibrary.org/obo/OMRSE_00002068", + "lbl": "communication", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000117", - "val": "John Judkins" + "val": "S. Clint Dowland" }, { - "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "pred": "http://purl.org/dc/elements/1.1/contributor", "val": "Mathias Brochhausen" }, { - "pred": "http://purl.obolibrary.org/obo/OOSTT_00000030", - "val": "An advanced academic degree in the principles and practices of nursing, with a focus on administration, education, or advanced nursing practice, granted by an accredited college or university after the successful completion of a master's of nursing program." + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Matthew Diller" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "William R. Hogan" } ], + "comments": [ + "For example, if you tell someone, “It is raining,” you produce sounds that have patterns that concretize information about the weather. Your utilization of that concretization is part of the communication. When the other person hears you, they interpret those patterns to concretize something, which may or may not be the same as what you intended to convey. In other words, they interpret the sounds you produce to have meanings associated with them, and that interpretation process is another part of the communication. If a process does not have a part of each type, it is not a communication.", + "The interpretation need not correspond exactly to what was intended by the other participant.", + "The term 'participant' in the definition need not refer to a human agent." + ], "definition": { - "val": "An academic degree in the science and principles of nursing, granted by an accredited tertiary education provider after the successful completion of a master's of nursing program.", + "val": "A process in which some participant shares some generically dependent continuant with some other participant. The former utilizes some specifically dependent continuant that concretizes the generically dependent continuant intended to be shared, while the latter interprets that specifically dependent continuant to concretize some particular generically dependent continuant, aiming to accurately infer the other participant’s intent.", "xrefs": [] } }, "type": "CLASS" }, { - "id": "http://purl.obolibrary.org/obo/PATO_0000051", - "lbl": "morphology", + "id": "http://purl.obolibrary.org/obo/OMRSE_00002069", + "lbl": "language", "meta": { "basicPropertyValues": [ { - "pred": "http://purl.obolibrary.org/obo/IAO_0000111", - "val": "morphology" + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "William R. Hogan" }, { - "pred": "http://purl.obolibrary.org/obo/IAO_0000412", - "val": "http://purl.obolibrary.org/obo/pato.owl" + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Mathias Brochhausen" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Matthew Diller" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "S. Clint Dowland" } ], "definition": { - "val": "A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure.", + "val": "A disposition that (i) is an aggregate of linguistic competences, considered as forming a distinct group on the basis of perceived common characteristics, such as mutual intelligibility among their bearers, in addition to historical or cultural factors; (ii) if realized, is realized in any and all realizations of those linguistic competences; and (iii) inheres in a linguistic community.", "xrefs": [] } }, "type": "CLASS" }, { - "id": "http://purl.obolibrary.org/obo/PATO_0000122", - "lbl": "length", + "id": "http://purl.obolibrary.org/obo/OMRSE_00002070", + "lbl": "disclosure of preferred language", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "S. Clint Dowland" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Mathias Brochhausen" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Matthew Diller" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "William R. Hogan" + } + ], + "definition": { + "val": "A communication in which some participant states a preference for some communicative process to be in a certain language, via some concretization of some preferred language information content entity.", + "xrefs": [] + } + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/OMRSE_00002071", + "lbl": "preferred language information content entity", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "Mathias Brochhausen" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Matthew Diller" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "S. Clint Dowland" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "William R. Hogan" + } + ], + "definition": { + "val": "An information content entity that is about some person and some language, and that conveys the language with which that person prefers to communicate within some given context.", + "xrefs": [] + } + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/OMRSE_00002072", + "lbl": "role in human social processes", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "Matthew Diller" + }, + { + "pred": "http://purl.org/dc/elements/1.1/contributor", + "val": "Mathias Brochhausen" + } + ], + "comments": [ + "Previous definition: A role played by an entity in human social processes." + ], + "definition": { + "val": "A role inhering in an entity realized by social interactions in human society.", + "xrefs": [] + } + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/OOSTT_00000030", + "lbl": "OOSTT user-centered description", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "Mathias Brochhausen" + } + ] + }, + "type": "PROPERTY" + }, + { + "id": "http://purl.obolibrary.org/obo/OOSTT_00000074", + "lbl": "academic degree", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "John Judkins" + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "Mathias Brochhausen" + }, + { + "pred": "http://purl.obolibrary.org/obo/OOSTT_00000030", + "val": "Recognized degree awarded after successful completion of a college or post-graduate porgram." + } + ], + "definition": { + "val": "An information content entity that is the specified outcome of and documents the sucessful completion of a tertiary education program.", + "xrefs": [] + } + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/OOSTT_00000081", + "lbl": "associate degree", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "John Judkins" + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "Mathias Brochhausen" + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000119", + "val": "https://en.wikipedia.org/w/index.php?title=Associate_degree&oldid=723897149" + }, + { + "pred": "http://purl.obolibrary.org/obo/OOSTT_00000030", + "val": "Recognition awarded after completion of a specific curriculum from an accredited tertiary education provider that falls between high school and bachelor's degree program." + } + ], + "definition": { + "val": "An academic degree awarded by colleges and universities upon completion of a program of study lasting two years.", + "xrefs": [] + } + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/OOSTT_00000082", + "lbl": "master's degree", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "John Judkins" + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "Mathias Brochhausen" + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000119", + "val": "https://en.wikipedia.org/w/index.php?title=Master%27s_degree&oldid=726036185" + } + ], + "definition": { + "val": "An academic degree awarded by universities upon completion of a course of study demonstrating a mastery or high-order overview of a specific field of study or area of professional practice.[1] Within the area studied, graduates are posited to possess advanced knowledge of a specialized body of theoretical and applied topics; high order skills in analysis, critical evaluation, or professional application; and the ability to solve complex problems and think rigorously and independently.", + "xrefs": [] + } + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/OOSTT_00000083", + "lbl": "bachelor's degree", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "John Judkins" + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "Mathias Brochhausen" + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000119", + "val": "https://en.wikipedia.org/w/index.php?title=Bachelor%27s_degree&oldid=725713923" + } + ], + "definition": { + "val": "An academic degree awarded by colleges and universities upon completion of a course of study lasting three to seven years.", + "xrefs": [] + } + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/OOSTT_00000084", + "lbl": "bachelor's of nursing degree", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "John Judkins" + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "Mathias Brochhausen" + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000119", + "val": "https://en.wikipedia.org/w/index.php?title=Bachelor_of_Science_in_Nursing&oldid=725962822" + } + ], + "definition": { + "val": "An academic degree in the science and principles of nursing, granted by an accredited tertiary education provider after the successful completion of a bachelor's of nursing program.", + "xrefs": [] + } + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/OOSTT_00000086", + "lbl": "master's in the science of nursing degree", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "John Judkins" + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "Mathias Brochhausen" + }, + { + "pred": "http://purl.obolibrary.org/obo/OOSTT_00000030", + "val": "An advanced academic degree in the principles and practices of nursing, with a focus on administration, education, or advanced nursing practice, granted by an accredited college or university after the successful completion of a master's of nursing program." + } + ], + "definition": { + "val": "An academic degree in the science and principles of nursing, granted by an accredited tertiary education provider after the successful completion of a master's of nursing program.", + "xrefs": [] + } + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/PATO_0000001", + "lbl": "quality", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000589", + "val": "quality (PATO)" + } + ] + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/PATO_0000051", + "lbl": "morphology", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000111", + "val": "morphology" + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000412", + "val": "http://purl.obolibrary.org/obo/pato.owl" + } + ], + "definition": { + "val": "A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure.", + "xrefs": [] + } + }, + "type": "CLASS" + }, + { + "id": "http://purl.obolibrary.org/obo/PATO_0000122", + "lbl": "length", "meta": { "basicPropertyValues": [ { @@ -24837,7 +25392,7 @@ }, { "id": "http://purl.obolibrary.org/obo/RO_0000052", - "lbl": "inheres in", + "lbl": "characteristic of", "meta": { "basicPropertyValues": [ { @@ -24848,10 +25403,18 @@ "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "this fragility inheres in this vase" }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000112", + "val": "this fragility is a characteristic of this vase" + }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000112", "val": "this red color inheres in this apple" }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000112", + "val": "this red color is a characteristic of this apple" + }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", "val": "A dependent inheres in its bearer at all times for which the dependent exists." @@ -24865,6 +25428,9 @@ "val": "http://purl.obolibrary.org/obo/RO_0001901" } ], + "comments": [ + "Note that this relation was previously called \"inheres in\", but was changed to be called \"characteristic of\" because BFO2 uses \"inheres in\" in a more restricted fashion. This relation differs from BFO2:inheres_in in two respects: (1) it does not impose a range constraint, and thus it allows qualities of processes, as well as of information entities, whereas BFO2 restricts inheres_in to only apply to independent continuants (2) it is declared functional, i.e. something can only be a characteristic of one thing." + ], "definition": { "val": "a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence", "xrefs": [] @@ -24907,7 +25473,7 @@ } ], "definition": { - "val": "a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence", + "val": "Inverse of characteristic_of", "xrefs": [] } }, @@ -25067,6 +25633,9 @@ "val": "is function of" } ], + "comments": [ + "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020." + ], "definition": { "val": "a relation between a function and an independent continuant (the bearer), in which the function specifically depends on the bearer for its existence", "xrefs": [] @@ -25096,6 +25665,9 @@ "val": "quality_of" } ], + "comments": [ + "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020." + ], "definition": { "val": "a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence", "xrefs": [] @@ -25125,6 +25697,9 @@ "val": "role_of" } ], + "comments": [ + "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020." + ], "definition": { "val": "a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence", "xrefs": [] @@ -25218,6 +25793,23 @@ }, "type": "PROPERTY" }, + { + "id": "http://purl.obolibrary.org/obo/RO_0000092", + "lbl": "disposition of", + "meta": { + "comments": [ + "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020." + ], + "definition": { + "val": "inverse of has disposition", + "xrefs": [] + }, + "subsets": [ + "http://purl.obolibrary.org/obo/RO_0002259" + ] + }, + "type": "PROPERTY" + }, { "id": "http://purl.obolibrary.org/obo/RO_0001000", "lbl": "derives from", @@ -25459,6 +26051,17 @@ }, "type": "PROPERTY" }, + { + "id": "http://purl.obolibrary.org/obo/RO_0002012", + "lbl": "occurrent part of", + "meta": { + "definition": { + "val": "A part of relation that applies only between occurrents.", + "xrefs": [] + } + }, + "type": "PROPERTY" + }, { "id": "http://purl.obolibrary.org/obo/RO_0002013", "lbl": "has regulatory component activity", @@ -25891,7 +26494,6 @@ }, "subsets": [ "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension", - "http://purl.obolibrary.org/obo/valid_for_go_gp2term", "http://purl.obolibrary.org/obo/valid_for_go_ontology", "http://purl.obolibrary.org/obo/valid_for_gocam" ] @@ -25926,7 +26528,6 @@ }, "subsets": [ "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension", - "http://purl.obolibrary.org/obo/valid_for_go_gp2term", "http://purl.obolibrary.org/obo/valid_for_go_ontology", "http://purl.obolibrary.org/obo/valid_for_gocam" ] @@ -25961,7 +26562,6 @@ }, "subsets": [ "http://purl.obolibrary.org/obo/valid_for_go_annotation_extension", - "http://purl.obolibrary.org/obo/valid_for_go_gp2term", "http://purl.obolibrary.org/obo/valid_for_go_ontology", "http://purl.obolibrary.org/obo/valid_for_gocam" ] @@ -26027,7 +26627,7 @@ }, { "pred": "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val": "https://github.com/oborel/obo-relations/wiki/ROGuide#defining-property-chains-involving-reflexivity" + "val": "http://purl.obolibrary.org/obo/ro/docs/reflexivity/" } ], "definition": { @@ -26049,6 +26649,10 @@ { "pred": "http://purl.obolibrary.org/obo/IAO_0000118", "val": "agent in" + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0100001", + "val": "http://purl.obolibrary.org/obo/RO_0002608" } ], "comments": [ @@ -26090,6 +26694,10 @@ { "pred": "http://purl.obolibrary.org/obo/IAO_0000412", "val": "http://purl.obolibrary.org/obo/ro.owl" + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0100001", + "val": "http://purl.obolibrary.org/obo/RO_0002500" } ], "definition": { @@ -26438,17 +27046,21 @@ }, { "id": "http://purl.obolibrary.org/obo/RO_0002314", - "lbl": "inheres in part of", + "lbl": "characteristic of part of", "meta": { "basicPropertyValues": [ { "pred": "http://purl.obolibrary.org/obo/IAO_0000116", - "val": "Because part_of is transitive, inheres in is a sub-relation of inheres in part of" + "val": "Because part_of is transitive, inheres in is a sub-relation of characteristic of part of" }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000117", "val": "Chris Mungall" }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000118", + "val": "inheres in part of" + }, { "pred": "http://purl.obolibrary.org/obo/IAO_0000119", "val": "http://www.ncbi.nlm.nih.gov/pubmed/20064205" @@ -26459,11 +27071,11 @@ }, { "pred": "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val": "https://github.com/oborel/obo-relations/wiki/ROGuide#defining-property-chains-involving-reflexivity" + "val": "http://purl.obolibrary.org/obo/ro/docs/reflexivity/" } ], "definition": { - "val": "q inheres in part of w if and only if there exists some p such that q inheres in p and p part of w.", + "val": "q characteristic of part of w if and only if there exists some p such that q inheres in p and p part of w.", "xrefs": [] } }, @@ -26530,10 +27142,6 @@ { "pred": "http://purl.obolibrary.org/obo/IAO_0000232", "val": "This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized." - }, - { - "pred": "http://purl.obolibrary.org/obo/IAO_0000232", - "val": "This relation is currently used experimentally by the Gene Ontology Consortium. It may not be stable and may be obsoleted at some future time." } ], "subsets": [ @@ -27090,11 +27698,11 @@ }, { "pred": "http://www.w3.org/2000/01/rdf-schema#seeAlso", - "val": "http://purl.obolibrary.org/obo/MI_0914" + "val": "http://purl.obolibrary.org/obo/ro/docs/interaction-relations/" }, { - "pred": "http://xmlns.com/foaf/0.1/page", - "val": "https://github.com/oborel/obo-relations/wiki/InteractionRelations" + "pred": "http://www.w3.org/2004/02/skos/core#closeMatch", + "val": "http://purl.obolibrary.org/obo/MI_0914" } ], "definition": { @@ -27136,7 +27744,7 @@ "val": "http://purl.obolibrary.org/obo/ECO_0000353" }, { - "pred": "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "pred": "http://www.w3.org/2004/02/skos/core#closeMatch", "val": "http://purl.obolibrary.org/obo/MI_0915" } ], @@ -27429,8 +28037,8 @@ "val": "http://ontologydesignpatterns.org/wiki/Submissions:N-Ary_Relation_Pattern_%28OWL_2%29" }, { - "pred": "http://xmlns.com/foaf/0.1/page", - "val": "https://github.com/oborel/obo-relations/wiki/InteractionRelations" + "pred": "http://www.w3.org/2000/01/rdf-schema#seeAlso", + "val": "http://purl.obolibrary.org/obo/ro/docs/interaction-relations/" } ] }, @@ -28085,6 +28693,94 @@ }, "type": "PROPERTY" }, + { + "id": "http://purl.obolibrary.org/obo/RO_0017001", + "lbl": "utilizes", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000112", + "val": "A diagnostic testing device utilizes a specimen." + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "Asiyah Lin" + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000117", + "val": "https://orcid.org/0000-0001-9625-1899 Bill Duncan" + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000232", + "val": "A diagnostic testing device utilizes a specimen means that the diagnostic testing device is capable of an assay, and this assay a specimen as its input." + }, + { + "pred": "http://purl.obolibrary.org/obo/IAO_0000232", + "val": "See github ticket https://github.com/oborel/obo-relations/issues/497" + }, + { + "pred": "http://www.geneontology.org/formats/oboInOwl#creation_date", + "val": "2021-11-08" + } + ], + "definition": { + "val": "X utilizes Y means X and Y are material entities, and X is capable of some process P that has input Y.", + "xrefs": [] + } + }, + "type": "PROPERTY" + }, + { + "id": "http://purl.obolibrary.org/obo/RO_0019000", + "lbl": "regulates characteristic", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0002-8688-6599" + } + ], + "definition": { + "val": "A relationship that holds between a process and a characteristic in which process (P) regulates characteristic (C) iff: P results in the existence of C OR affects the intensity or magnitude of C.", + "xrefs": [] + } + }, + "type": "PROPERTY" + }, + { + "id": "http://purl.obolibrary.org/obo/RO_0019001", + "lbl": "positively regulates characteristic", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0002-8688-6599" + } + ], + "definition": { + "val": "A relationship that holds between a process and a characteristic in which process (P) positively regulates characteristic (C) iff: P results in an increase in the intensity or magnitude of C.", + "xrefs": [] + } + }, + "type": "PROPERTY" + }, + { + "id": "http://purl.obolibrary.org/obo/RO_0019002", + "lbl": "negatively regulates characteristic", + "meta": { + "basicPropertyValues": [ + { + "pred": "http://purl.org/dc/terms/contributor", + "val": "https://orcid.org/0000-0002-8688-6599" + } + ], + "definition": { + "val": "A relationship that holds between a process and a characteristic in which process (P) negatively regulates characteristic (C) iff: P results in a decrease in the intensity or magnitude of C.", + "xrefs": [] + } + }, + "type": "PROPERTY" + }, { "id": "http://purl.obolibrary.org/obo/UO_0000001", "lbl": "length unit", @@ -28191,11 +28887,11 @@ "basicPropertyValues": [ { "pred": "http://www.geneontology.org/formats/oboInOwl#hasDefinition", - "val": "_:genid2147485106" + "val": "_:genid2147485172" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasDefinition", - "val": "_:genid2147485107" + "val": "_:genid2147485173" }, { "pred": "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace", @@ -28258,11 +28954,6 @@ "lbl": "transferase activity, transferring phosphorus-containing groups", "type": "CLASS" }, - { - "id": "http://purl.obolibrary.org/obo/GO_0050896", - "lbl": "response to stimulus", - "type": "CLASS" - }, { "id": "http://purl.obolibrary.org/obo/IAO_0000004", "lbl": "has measurement value", @@ -28513,11 +29204,6 @@ "lbl": "acute care encounter", "type": "CLASS" }, - { - "id": "http://purl.obolibrary.org/obo/OMRSE_00000161", - "lbl": "leaving a health care facility after receiving care", - "type": "CLASS" - }, { "id": "http://purl.obolibrary.org/obo/OMRSE_00000164", "lbl": "home health care organization", @@ -28618,11 +29304,6 @@ "lbl": "socio-economic data item", "type": "CLASS" }, - { - "id": "http://purl.obolibrary.org/obo/RO_0000092", - "lbl": "disposition of", - "type": "PROPERTY" - }, { "id": "http://www.geneontology.org/formats/oboInOwl#ObsoleteClass", "lbl": "Obsolete Class", @@ -28632,66 +29313,6 @@ "id": "http://www.w3.org/2000/01/rdf-schema#label", "lbl": "label", "type": "PROPERTY" - }, - { - "id": "http://purl.obolibrary.org/obo/OMRSE_00002046", - "meta": { - "basicPropertyValues": [ - { - "pred": "http://purl.obolibrary.org/obo/IAO_0000111", - "val": "vocational education plan specification" - }, - { - "pred": "http://purl.obolibrary.org/obo/IAO_0000117", - "val": "William R. Hogan" - }, - { - "pred": "http://purl.obolibrary.org/obo/IAO_0000119", - "val": "http://uis.unesco.org/sites/default/files/documents/international-standard-classification-of-education-isced-2011-en.pdf" - } - ], - "comments": [ - "Vocational education programs are designed for learners to acquire the knowledge, skills and competencies specific to a particular occupation, trade, or class of occupations or trades. Such programs may have work-based components (e.g. apprenticeships, dual-system education programmes). Successful completion of such programs leads to labor market-relevant, vocational qualifications acknowledged as occupationally-oriented by the relevant national authorities and/or the labor market.", - "vocational education program" - ], - "definition": { - "val": "An educational plan specification that has a vocational objective specification as part.", - "xrefs": [] - } - }, - "type": "CLASS" - }, - { - "id": "http://purl.obolibrary.org/obo/OMRSE_00002047", - "meta": { - "basicPropertyValues": [ - { - "pred": "http://purl.obolibrary.org/obo/IAO_0000111", - "val": "kindergarten education plan specification" - }, - { - "pred": "http://purl.obolibrary.org/obo/IAO_0000117", - "val": "William R. Hogan" - }, - { - "pred": "http://purl.obolibrary.org/obo/IAO_0000117", - "val": "kindergarten education program" - }, - { - "pred": "http://purl.org/dc/elements/1.1/creator", - "val": "http://orcid.org/0000-0002-9881-1017" - }, - { - "pred": "http://purl.org/dc/elements/1.1/date", - "val": "2020-09-02T12:38:43Z" - } - ], - "definition": { - "val": "A primary education plan specification that specifies the competencies and information content entities that should be acquired by students in the first year of primary education in the United States.", - "xrefs": [] - } - }, - "type": "CLASS" } ], "propertyChainAxioms": [ @@ -28928,6 +29549,13 @@ ], "predicateId": "http://purl.obolibrary.org/obo/RO_0002428" }, + { + "chainPredicateIds": [ + "http://purl.obolibrary.org/obo/RO_0002211", + "http://purl.obolibrary.org/obo/RO_0019000" + ], + "predicateId": "http://purl.obolibrary.org/obo/RO_0019000" + }, { "chainPredicateIds": [ "http://purl.obolibrary.org/obo/RO_0002212", @@ -28963,6 +29591,13 @@ ], "predicateId": "http://purl.obolibrary.org/obo/RO_0002430" }, + { + "chainPredicateIds": [ + "http://purl.obolibrary.org/obo/RO_0002212", + "http://purl.obolibrary.org/obo/RO_0019001" + ], + "predicateId": "http://purl.obolibrary.org/obo/RO_0019002" + }, { "chainPredicateIds": [ "http://purl.obolibrary.org/obo/RO_0002213", @@ -28991,6 +29626,27 @@ ], "predicateId": "http://purl.obolibrary.org/obo/RO_0002429" }, + { + "chainPredicateIds": [ + "http://purl.obolibrary.org/obo/RO_0002213", + "http://purl.obolibrary.org/obo/RO_0019001" + ], + "predicateId": "http://purl.obolibrary.org/obo/RO_0019001" + }, + { + "chainPredicateIds": [ + "http://purl.obolibrary.org/obo/RO_0002213", + "http://purl.obolibrary.org/obo/RO_0019002" + ], + "predicateId": "http://purl.obolibrary.org/obo/RO_0019002" + }, + { + "chainPredicateIds": [ + "http://purl.obolibrary.org/obo/RO_0002215", + "http://purl.obolibrary.org/obo/RO_0002233" + ], + "predicateId": "http://purl.obolibrary.org/obo/RO_0017001" + }, { "chainPredicateIds": [ "http://purl.obolibrary.org/obo/RO_0002224", diff --git a/omrse.obo b/omrse.obo index a0612a9..0c4e37c 100644 --- a/omrse.obo +++ b/omrse.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: omrse/releases/2021-08-30/omrse-full.owl +data-version: omrse/releases/2022-04-06/omrse-full.owl subsetdef: attribute_slim "" subsetdef: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension "" subsetdef: http://purl.obolibrary.org/obo/valid_for_go_gp2term "" @@ -17,7 +17,7 @@ property_value: http://purl.org/dc/elements/1.1/creator "Swetha Garimalla" xsd:s property_value: http://purl.org/dc/elements/1.1/creator "William Hogan" xsd:string property_value: http://purl.org/dc/terms/license https://creativecommons.org/licenses/by/4.0/ xsd:string property_value: owl:versionInfo "2020-10-27" xsd:string -property_value: owl:versionInfo "2021-08-30" xsd:string +property_value: owl:versionInfo "2022-04-06" xsd:string name: The Ontology of Medically Related Social Entities [Term] @@ -336,6 +336,7 @@ property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl id: BFO:0000019 name: quality is_a: BFO:0000020 ! specifically dependent continuant +relationship: BFO:0000050 BFO:0000019 ! part of quality property_value: BFO:0000179 "quality" xsd:string property_value: BFO:0000180 "Quality" xsd:string property_value: IAO:0000112 "the ambient temperature of this portion of air" xsd:string @@ -778,7 +779,7 @@ name: behavior def: "The internally coordinated responses (actions or inactions) of animals (individuals or groups) to internal or external stimuli, via a mechanism that involves nervous system activity." [GOC:ems, GOC:jl, ISBN:0395448956, PMID:20160973] comment: 1. Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation reviews.\n2. While a broader definition of behavior encompassing plants and single cell organisms would be justified on the basis of some usage (see PMID:20160973 for discussion), GO uses a tight definition that limits behavior to animals and to responses involving the nervous system, excluding plant responses that GO classifies under development, and responses of unicellular organisms that has general classifications for covering the responses of cells in multicellular organisms (e.g. cell chemotaxis). xref: Wikipedia:Behavior -is_a: GO:0050896 ! response to stimulus +is_a: GO:0008150 ! biological_process [Term] id: GO:0008150 @@ -804,11 +805,6 @@ id: GO:0016772 name: transferase activity, transferring phosphorus-containing groups is_a: GO:0016740 ! transferase activity -[Term] -id: GO:0050896 -name: response to stimulus -is_a: GO:0008150 ! biological_process - [Term] id: IAO:0000001 name: conditional specification @@ -3249,7 +3245,7 @@ property_value: IAO:0000117 "Sarah Bost" xsd:string id: IAO:0020027 name: owner role def: "A role in a human social process that is based on a social act and whose bearer exercises exclusive control over a property, where this control is permitted by one or more deontic roles, which are parts of the owner role." [] -is_a: OMRSE:00000024 ! role in human social processes +is_a: OMRSE:00002072 ! role in human social processes property_value: IAO:0000112 "Tammy's owner role with regards to the house on 234 Evergreen Terrace; Walter's owner role with regards to the intellectual property on his movie script" xsd:string property_value: IAO:0000117 "Mathias Brochhausen" xsd:string property_value: IAO:0000119 https://github.com/d-acts/d-acts/issues/29 xsd:string @@ -3857,7 +3853,7 @@ property_value: IAO:0000117 "William R. Hogan" xsd:string [Term] id: OMRSE:00000002 name: party to a legal entity -is_a: OMRSE:00000024 ! role in human social processes +is_a: OMRSE:00002072 ! role in human social processes [Term] id: OMRSE:00000003 @@ -3911,7 +3907,7 @@ id: OMRSE:00000010 name: human health care role def: "A role in human social processes that is realized by health care processes such as seeking or providing treatment for disease and injury, diagnosing disease and injury, or undergoing diagnosis. " [] comment: Mathias Brochhausen -is_a: OMRSE:00000024 ! role in human social processes +is_a: OMRSE:00002072 ! role in human social processes relationship: BFO:0000054 OGMS:0000097 ! realized in health care encounter property_value: IAO:0000117 "William R. Hogan" xsd:string property_value: IAO:0000118 "health care role" xsd:string @@ -4011,20 +4007,21 @@ property_value: IAO:0000412 http://purl.obolibrary.org/obo/omrse.owl xsd:string [Term] id: OMRSE:00000024 -name: role in human social processes +name: obsolete role in human social processes def: "A role inhering in an entity realized by social interactions in human society." [] comment: Previous definition: A role played by an entity in human social processes. -is_a: BFO:0000023 ! role +is_a: ObsoleteClass ! Obsolete Class property_value: IAO:0000117 "Mathias Brochhausen" xsd:string property_value: IAO:0000412 http://purl.obolibrary.org/obo/omrse.owl xsd:string +is_obsolete: true [Term] id: OMRSE:00000025 name: organization social role def: "A role in human social processes that inheres in an organization." [] comment: Defined class that we will ultimately move to an application ontology. We are leaving here for now until we determine which application ontology: it is likely going to be an ontology that does not currently (2012-06-05) exist.\n\nDitto for its current descendants. -is_a: OMRSE:00000024 ! role in human social processes is_a: OMRSE:00000051 ! organization role +is_a: OMRSE:00002072 ! role in human social processes property_value: IAO:0000117 "William R. Hogan" xsd:string [Term] @@ -4034,8 +4031,8 @@ def: "A role in human social processes that inheres in an organism." [] comment: Defined class that we will ultimately move to an application ontology. We are leaving here for now until we determine which application ontology: it is likely going to be an ontology that does not currently (2012-06-05) exist.\n\nDitto for its current descendants. comment: Includes animals as well as humans. For example, pet, assistance animal, animal grown for food, work animal, domesticated animal, K-9, etc. Human roles include gender role, party to legal entities, health care provider roles like doctor, nurse, etc. comment: Previous definition: A role in human social processes played by an organism. -is_a: OMRSE:00000024 ! role in human social processes is_a: OMRSE:00000049 ! organism role +is_a: OMRSE:00002072 ! role in human social processes property_value: IAO:0000117 "William R. Hogan\nMathias Brochhausen" xsd:string [Term] @@ -4143,7 +4140,7 @@ id: OMRSE:00000038 name: legal person role def: "A role borne by a human individual or by a collection of humans regarded as possessing rights and duties enforeable at law." [] comment: We are aware of the fact that Wikipedia's definition differs from ours by saying that "Legal personality (...) is the characteristic of a non-living entity regarded by law to have the status of personhood" (http://en.wikipedia.org/wiki/Legal_personality) \nHowever, Shaw explicates:\n"In any legal system, certain entities, whether they be individuals or companies, will be regarded as possessing rights and duties enforceable at law. Thus an individual may prosecute or be prosecuted for assault and a company can sue for breach of contract. They are able to do this because the law recognises them as 'legal persons' possessing the capacity to have and to maintain certain rights, and being subject to perform specific duties. (...) In municipal law individuals, limited companies and public corporations are recognized as each possessing a distinct legal personality, the terms of which are circumscribed by the relevant legislation" (Shaw MN: International Law. Sixth Edition. Cambridge University Press, Cambridge, 2008). We hold that Shaw's position is ontological more prolific since it not only allows to explain how groups of individuals become recognized as unities at law, but also how different individuals can hold different legal personality roles (always against the context of one legal system). The latter will proof useful when dealing with the representing comatous patients or minorsat law in ontologies. -is_a: OMRSE:00000024 ! role in human social processes +is_a: OMRSE:00002072 ! role in human social processes property_value: IAO:0000117 "Mathias Brochhausen" xsd:string property_value: IAO:0000119 "Malcolm N. Shaw: International Law. Cambridge University Press, Cambridge, 2008." xsd:string @@ -4287,7 +4284,7 @@ property_value: IAO:0000117 "Mathias Brochhausen" xsd:string [Term] id: OMRSE:00000054 name: hospital role -def: "A healthcare provider role that inheres in an organization and is realized by providing inpatient and outpatient care." [] +def: "A healthcare provider role that inheres in an organization and is realized by providing inpatient care." [] is_a: OMRSE:00000015 ! health care provider organization role property_value: IAO:0000117 "Mathias Brochhausen" xsd:string @@ -4455,6 +4452,7 @@ property_value: IAO:0000117 "Amanda Hicks" xsd:string id: OMRSE:00000077 name: job role def: "A role in human social processes that, if realized, is realized when the bearer provides labor or services in exchange for a wage or salary as specified by some deontic declaration." [] +is_a: OMRSE:00002072 ! role in human social processes relationship: BFO:0000054 OMRSE:00000146 ! realized in employment process property_value: IAO:0000117 "Amanda hicks" xsd:string property_value: IAO:0000118 "employee" xsd:string @@ -4524,7 +4522,7 @@ property_value: IAO:0000118 "human organizational role" xsd:string id: OMRSE:00000087 name: employer role def: "a role in human social processes that is realized when the bearer provides a wage or salary in exchange for some labour or services as specified by some declaration" [] -is_a: OMRSE:00000024 ! role in human social processes +is_a: OMRSE:00002072 ! role in human social processes relationship: BFO:0000054 OMRSE:00000146 ! realized in employment process [Term] @@ -4556,7 +4554,7 @@ property_value: IAO:0000117 "Amanda Hicks" xsd:string id: OMRSE:00000092 name: insured party role def: "A role that inheres in an organism that is able to receive benefits from an insurance policy. The role, if realized, is realized by receiving benefits that are covered by the insurance policy." [] -is_a: OMRSE:00000024 ! role in human social processes +is_a: OMRSE:00002072 ! role in human social processes property_value: IAO:0000117 "Amanda Hicks" xsd:string [Term] @@ -4575,7 +4573,7 @@ property_value: IAO:0000117 "Amanda Hicks" xsd:string [Term] id: OMRSE:00000095 name: payer role -is_a: OMRSE:00000024 ! role in human social processes +is_a: OMRSE:00002072 ! role in human social processes [Term] id: OMRSE:00000096 @@ -5035,7 +5033,10 @@ is_a: OGMS:0000097 ! health care encounter [Term] id: OMRSE:00000161 name: leaving a health care facility after receiving care +def: "A process (1) where the active participant, who at the beginning of the process is located in a healthcare facility, exits the facility and no longer stands in a \"located in\" relationship to the facility and (2) is immediately preceded by a healthcare encounter in which the active participant also participated." [] is_a: BFO:0000015 ! process +relationship: RO:0002087 OGMS:0000097 ! immediately preceded by health care encounter +property_value: IAO:0000117 "William R. Hogan" xsd:string [Term] id: OMRSE:00000162 @@ -5242,47 +5243,44 @@ property_value: IAO:0000119 "Modified version of definition provided by Human Be [Term] id: OMRSE:00000192 -name: communication +name: obsolete communication def: "A process in which some participant shares some information content entity about some state of that participant with some other participant." [] comment: The term 'participant' in the definition need not refer to a human agent. -is_a: BFO:0000015 ! process -relationship: RO:0000057 BFO:0000040 ! has_participant material entity -relationship: RO:0000057 IAO:0000030 ! has_participant information content entity +is_a: ObsoleteClass ! Obsolete Class property_value: http://purl.org/dc/elements/1.1/contributor "Mathias Brochhausen" xsd:string property_value: http://purl.org/dc/elements/1.1/contributor "Matthew Diller" xsd:string property_value: http://purl.org/dc/elements/1.1/contributor "William R. Hogan" xsd:string property_value: IAO:0000117 "S. Clint Dowland" xsd:string +is_obsolete: true [Term] id: OMRSE:00000193 -name: linguistic competence +name: obsolete linguistic competence def: "A disposition inhering in a material entity that, if realized, is realized by that material entity’s communicating via some linguistic concretization." [] -is_a: BFO:0000016 ! disposition -relationship: BFO:0000054 OMRSE:00000192 ! realized in communication -relationship: RO:0000052 BFO:0000040 ! inheres in material entity +is_a: ObsoleteClass ! Obsolete Class property_value: http://purl.org/dc/elements/1.1/contributor "Mathias Brochhausen" xsd:string property_value: http://purl.org/dc/elements/1.1/contributor "Matthew Diller" xsd:string property_value: http://purl.org/dc/elements/1.1/contributor "William R. Hogan" xsd:string property_value: IAO:0000117 "S. Clint Dowland" xsd:string +is_obsolete: true [Term] id: OMRSE:00000194 -name: language +name: obsolete language def: "A disposition inhering in a linguistic community that (i) is a maximal aggregate of communicatively compatible linguistic competences, and (ii) if realized, is realized by any and all realizations of those linguistic competences." [] -is_a: BFO:0000016 ! disposition -relationship: BFO:0000054 OMRSE:00000192 ! realized in communication -relationship: RO:0002351 OMRSE:00000193 ! has member linguistic competence +is_a: ObsoleteClass ! Obsolete Class property_value: http://purl.org/dc/elements/1.1/contributor "Mathias Brochhausen" xsd:string property_value: http://purl.org/dc/elements/1.1/contributor "Matthew Diller" xsd:string property_value: http://purl.org/dc/elements/1.1/contributor "S. Clint Dowland" xsd:string property_value: IAO:0000117 "William R. Hogan" xsd:string +is_obsolete: true [Term] id: OMRSE:00000195 name: linguistic community def: "A maximal aggregate of material entities such that each member bears a linguistic competence for the same language." [] is_a: BFO:0000040 ! material entity -relationship: RO:0000053 OMRSE:00000194 ! bearer of language +relationship: RO:0000053 OMRSE:00002069 ! bearer of language property_value: http://purl.org/dc/elements/1.1/contributor "Mathias Brochhausen" xsd:string property_value: http://purl.org/dc/elements/1.1/contributor "S. Clint Dowland" xsd:string property_value: http://purl.org/dc/elements/1.1/contributor "William R. Hogan" xsd:string @@ -5290,26 +5288,26 @@ property_value: IAO:0000117 "Matthew Diller" xsd:string [Term] id: OMRSE:00000196 -name: expression of preferred language +name: obsolete expression of preferred language def: "A communication in which some participant states a preference for some communicative process to be in a certain language, and that has a concretization of a preferred language information content entity as its specified output." [] is_a: OBI:0000011 ! planned process -is_a: OMRSE:00000192 ! communication +is_a: OMRSE:00000192 ! obsolete communication property_value: http://purl.org/dc/elements/1.1/contributor "Mathias Brochhausen" xsd:string property_value: http://purl.org/dc/elements/1.1/contributor "Matthew Diller" xsd:string property_value: http://purl.org/dc/elements/1.1/contributor "William R. Hogan" xsd:string property_value: IAO:0000117 "S. Clint Dowland" xsd:string +is_obsolete: true [Term] id: OMRSE:00000197 -name: preferred language information content entity +name: obsolete preferred language information content entity def: "An information content entity that (i) is about some person, some language, and some linguistic competence; and (ii) conveys the language with which that person prefers to communicate within some given context." [] -is_a: IAO:0000030 ! information content entity -relationship: IAO:0000136 OMRSE:00000193 ! is about linguistic competence -relationship: IAO:0000136 OMRSE:00000194 ! is about language +is_a: ObsoleteClass ! Obsolete Class property_value: http://purl.org/dc/elements/1.1/contributor "Matthew Diller" xsd:string property_value: http://purl.org/dc/elements/1.1/contributor "S. Clint Dowland" xsd:string property_value: http://purl.org/dc/elements/1.1/contributor "William R. Hogan" xsd:string property_value: IAO:0000117 "Mathias Brochhausen" xsd:string +is_obsolete: true [Term] id: OMRSE:00000198 @@ -5317,7 +5315,7 @@ name: information content entity-request process def: "a communication in which some participant requests of some other participant an information content entity about some portion of reality" [] comment: As with the parent class, 'participant' in the definition need not refer to a human agent. comment: The medium and grammatical form are irrelevant. For example, the request may be written or spoken, and while it may be in the form of a question, it need not be. -is_a: OMRSE:00000192 ! communication +is_a: OMRSE:00002068 ! communication property_value: IAO:0000117 "S. Clint Dowland" xsd:string [Term] @@ -5813,7 +5811,7 @@ def: "An educating that realizes a concretization of some program of education." comment: Note that parent class 'educating' and referenced class 'program of education' are defined elsewhere in this education module of OMRSE. comment: This class refers extremely broadly to the successful realization of any program of education: a single course, first grade, MD, PhD, high school, the ninth grade, getting a black belt in karate, getting a master mechanic certification, a bachelor's degree, a masters degree, a graduate certificate, early childhood education program, and even getting a certificate at the end of some week-long workshop, summer camp, a certifcate from a cooking class, an actuarial certification. is_a: OMRSE:00002029 ! education process -property_value: IAO:0000111 "completing a program of eduction" xsd:string +property_value: IAO:0000111 "completing a program of education" xsd:string property_value: IAO:0000117 "William R. Hogan" xsd:string [Term] @@ -5960,7 +5958,7 @@ property_value: IAO:0000119 http://uis.unesco.org/sites/default/files/documents/ [Term] id: OMRSE:00002045 name: highest level of education data item -def: "A socio-economic data item that is about a person and their completion of an education program (and its type), where that education progam is the last one in a sequence (of education programs) that the person has completed, where each education program completed except the last one is a pre-requisite to the education program completed after it." [] +def: "A socio-economic data item that is about a person and their completion of an education program (and its type), where that education program is the last one in a sequence (of education programs) that the person has completed, where each education program completed except the last one is a pre-requisite to the education program completed after it." [] comment: This data item in a typical attribute-value system such as table, XML, JSON takes values like "secondary education", "Associate Degree", "Bachelor Degree", "High School", and so on. is_a: OMRSE:00000506 ! socio-economic data item property_value: IAO:0000111 "highest level of education socio-economic data item" xsd:string @@ -5968,8 +5966,8 @@ property_value: IAO:0000117 "William R. Hogan" xsd:string [Term] id: OMRSE:00002046 +name: vocational education program def: "An educational plan specification that has a vocational objective specification as part." [] -comment: vocational education program comment: Vocational education programs are designed for learners to acquire the knowledge, skills and competencies specific to a particular occupation, trade, or class of occupations or trades. Such programs may have work-based components (e.g. apprenticeships, dual-system education programmes). Successful completion of such programs leads to labor market-relevant, vocational qualifications acknowledged as occupationally-oriented by the relevant national authorities and/or the labor market. is_a: OMRSE:00002031 ! educational program intersection_of: OMRSE:00002031 ! educational program @@ -5981,12 +5979,12 @@ property_value: IAO:0000119 http://uis.unesco.org/sites/default/files/documents/ [Term] id: OMRSE:00002047 +name: kindergarten education program def: "A primary education plan specification that specifies the competencies and information content entities that should be acquired by students in the first year of primary education in the United States." [] is_a: OMRSE:00002034 ! primary education program property_value: http://purl.org/dc/elements/1.1/creator http://orcid.org/0000-0002-9881-1017 property_value: http://purl.org/dc/elements/1.1/date 2020-09-02T12:38:43Z xsd:dateTime property_value: IAO:0000111 "kindergarten education plan specification" xsd:string -property_value: IAO:0000117 "kindergarten education program" xsd:string property_value: IAO:0000117 "William R. Hogan" xsd:string [Term] @@ -6137,6 +6135,133 @@ property_value: http://purl.org/dc/elements/1.1/contributor "S. Clint Dowland" x property_value: http://purl.org/dc/elements/1.1/contributor "William R. Hogan" xsd:string property_value: IAO:0000119 http://purl.obolibrary.org/obo/ERO_0002033 xsd:string +[Term] +id: OMRSE:00002061 +name: monetary personal income data item +def: "A data item that is about the sum of earnings for some person(s) from various forms of payment or profits." [] +comment: We use the phrase ‘some person’ in the definition because this class can be about an individual's or a household's earnings. Similarly, we use 'personal income' in the label because the term is typically restricted to individuals and households. This class is also restricted to being about monetary forms of income. +is_a: IAO:0000027 ! data item +property_value: http://purl.org/dc/elements/1.1/contributor "Chris Stoeckert" xsd:string +property_value: IAO:0000112 "Examples of monetary forms of payment include: wages, salary, or tips; interest generated by capital; dividends earned; lottery, game, or contest monetary winnings; alimony; royalties; trusts; pensions; receipt of rental payments; unemployment payments; social security payments; worker's compensation; social security payments; or profit from entrepreneurial activities." xsd:string +property_value: IAO:0000117 "Matthew Diller" xsd:string + +[Term] +id: OMRSE:00002062 +name: concretization-utilization process +def: "Process in which some participant utilizes some specifically dependent continuant as a concretization of some generically dependent continuant." [] +comment: Instances include any process that brings it about that some specifically dependent continuant begins to stand in a concretization relation to some generically dependent continuant, as well as any process in which someone makes use of a pre-established concretization relation. To be clear, instances do not include using concretizations of words or letters for purposes that do not make use of the concretization relations in which they stand (for example, hanging up a sign in a foreign language as a decoration because one likes the colors, despite having no idea what the sign says). +comment: Instances include, but are not limited to, processes that bring about cognitive concretizations. +is_a: BFO:0000015 ! process +relationship: RO:0000057 BFO:0000040 ! has_participant material entity +property_value: http://purl.org/dc/elements/1.1/contributor "Matthew Diller" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Sarah Bost" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "William R. Hogan" xsd:string +property_value: IAO:0000112 "Taking notes on a meeting is an example in which the concretization relation is newly established, since the SDCs that concretize the GDCs come into existence as the notes are written. In contrast, using slides prepared by someone else in order to convey information during a presentation is a case of using a concretization in which the performer neither brings the concretizing SDCs into existence nor is responsible for their standing in the concretization relation to the relevant GDCs. A nonlinguistic example is drawing the logo of one’s favorite brand, in which one creates a pattern that concretizes a GDC that is also concretized by patterns on products of the brand." xsd:string +property_value: IAO:0000117 "S. Clint Dowland" xsd:string + +[Term] +id: OMRSE:00002063 +name: linguistic concretization-utilization process +def: "A concretization-utilization process in which the utilized specifically dependent continuant concretizes the generically dependent through use of some language." [] +is_a: OMRSE:00002062 ! concretization-utilization process +property_value: http://purl.org/dc/elements/1.1/contributor "Matthew Diller" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Sarah Dowland" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "William R. Hogan" xsd:string +property_value: IAO:0000117 "S. Clint Dowland" xsd:string + +[Term] +id: OMRSE:00002064 +name: concretization-interpretation process +def: "Process in which some participant infers that some particular specifically dependent continuant stands in the concretization relation to some particular generically dependent continuant." [] +comment: The interpretation need not be accurate. It may even be the case that the specifically dependent continuant has not previously concretized anything. +is_a: BFO:0000015 ! process +relationship: RO:0000057 BFO:0000020 ! has_participant specifically dependent continuant +relationship: RO:0000057 BFO:0000040 ! has_participant material entity +property_value: http://purl.org/dc/elements/1.1/contributor "Matthew Diller" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Sarah Bost" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "William R. Hogan" xsd:string +property_value: IAO:0000112 "For example, reading a text message that says, “It is raining outside,” and inferring that the words on the screen are meant to convey information about the weather. The pattern on the screen that corresponds to the words is the SDC, and the ICE about the rain is the GDC. Or, hearing your spouse say, “Can you come to the kitchen?” and then knowing that your spouse wants you to come to the kitchen. You have interpreted the patterns of the sound as concretizing a GDC about what your spouse wants. Or, seeing a drawing of a basketball player and inferring—perhaps incorrectly—that it is of Michael Jordan." xsd:string +property_value: IAO:0000117 "S. Clint Dowland" xsd:string + +[Term] +id: OMRSE:00002065 +name: linguistic concretization-interpretation process +def: "A concretization-interpretation process in which the specifically dependent continuant is inferred to concretize the generically dependent continuant in a way that makes use of some language." [] +is_a: OMRSE:00002064 ! concretization-interpretation process +property_value: http://purl.org/dc/elements/1.1/contributor "Matthew Diller" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Sarah Bost" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "William R. Hogan" xsd:string +property_value: IAO:0000117 "S. Clint Dowland" xsd:string + +[Term] +id: OMRSE:00002066 +name: linguistic competence +def: "A disposition that inheres in some material entity and is such that that, if realized, it is realized by either some linguistic concretization-utilization process or some linguistic concretization-interpretation process." [] +comment: When realized in a concretization-utilization process, the only relevant concretization may in some cases be a cognitive one, but that suffices to realize a linguistic competence. For example, suppose one begins to write a letter, planning out the words ahead of time, but is interrupted before beginning to write and never resumes. During the process of planning out the words and what one intends to communicate, one is already concretizing words cognitively, as well as considering which combinations of words one can use to concretize additional generically dependent continuants. In doing so, one performs processes that realize one's linguistic competence, without producing any concretizations other than those cognitive ones. +is_a: BFO:0000016 ! disposition +relationship: RO:0000052 BFO:0000040 ! inheres in material entity +property_value: http://purl.org/dc/elements/1.1/contributor "Mathias Brochhausen" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Matthew Diller" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "William R. Hogan" xsd:string +property_value: IAO:0000117 "S. Clint Dowland" xsd:string + +[Term] +id: OMRSE:00002068 +name: communication +def: "A process in which some participant shares some generically dependent continuant with some other participant. The former utilizes some specifically dependent continuant that concretizes the generically dependent continuant intended to be shared, while the latter interprets that specifically dependent continuant to concretize some particular generically dependent continuant, aiming to accurately infer the other participant’s intent." [] +comment: For example, if you tell someone, “It is raining,” you produce sounds that have patterns that concretize information about the weather. Your utilization of that concretization is part of the communication. When the other person hears you, they interpret those patterns to concretize something, which may or may not be the same as what you intended to convey. In other words, they interpret the sounds you produce to have meanings associated with them, and that interpretation process is another part of the communication. If a process does not have a part of each type, it is not a communication. +comment: The interpretation need not correspond exactly to what was intended by the other participant. +comment: The term 'participant' in the definition need not refer to a human agent. +is_a: BFO:0000015 ! process +relationship: RO:0000057 BFO:0000040 ! has_participant material entity +property_value: http://purl.org/dc/elements/1.1/contributor "Mathias Brochhausen" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Matthew Diller" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "William R. Hogan" xsd:string +property_value: IAO:0000117 "S. Clint Dowland" xsd:string + +[Term] +id: OMRSE:00002069 +name: language +def: "A disposition that (i) is an aggregate of linguistic competences, considered as forming a distinct group on the basis of perceived common characteristics, such as mutual intelligibility among their bearers, in addition to historical or cultural factors; (ii) if realized, is realized in any and all realizations of those linguistic competences; and (iii) inheres in a linguistic community." [] +is_a: BFO:0000016 ! disposition +relationship: RO:0002351 OMRSE:00002066 ! has member linguistic competence +property_value: http://purl.org/dc/elements/1.1/contributor "Mathias Brochhausen" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Matthew Diller" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "S. Clint Dowland" xsd:string +property_value: IAO:0000117 "William R. Hogan" xsd:string + +[Term] +id: OMRSE:00002070 +name: disclosure of preferred language +def: "A communication in which some participant states a preference for some communicative process to be in a certain language, via some concretization of some preferred language information content entity." [] +is_a: OMRSE:00002068 ! communication +property_value: http://purl.org/dc/elements/1.1/contributor "Mathias Brochhausen" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "Matthew Diller" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "William R. Hogan" xsd:string +property_value: IAO:0000117 "S. Clint Dowland" xsd:string + +[Term] +id: OMRSE:00002071 +name: preferred language information content entity +def: "An information content entity that is about some person and some language, and that conveys the language with which that person prefers to communicate within some given context." [] +is_a: IAO:0000030 ! information content entity +relationship: IAO:0000136 BFO:0000040 ! is about material entity +relationship: IAO:0000136 OMRSE:00002069 ! is about language +property_value: http://purl.org/dc/elements/1.1/contributor "Matthew Diller" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "S. Clint Dowland" xsd:string +property_value: http://purl.org/dc/elements/1.1/contributor "William R. Hogan" xsd:string +property_value: IAO:0000117 "Mathias Brochhausen" xsd:string + +[Term] +id: OMRSE:00002072 +name: role in human social processes +def: "A role inhering in an entity realized by social interactions in human society." [] +comment: Previous definition: A role played by an entity in human social processes. +is_a: OMRSE:00000048 ! material entity role +relationship: RO:0000052 BFO:0000040 ! inheres in material entity +property_value: http://purl.org/dc/elements/1.1/contributor "Mathias Brochhausen" xsd:string +property_value: IAO:0000117 "Matthew Diller" xsd:string + [Term] id: OOSTT:00000074 name: academic degree @@ -6196,6 +6321,12 @@ property_value: OOSTT:00000030 "An advanced academic degree in the principles an id: ObsoleteClass name: Obsolete Class +[Term] +id: PATO:0000001 +name: quality +is_a: BFO:0000020 ! specifically dependent continuant +property_value: IAO:0000589 "quality (PATO)" xsd:string + [Term] id: PATO:0000051 name: morphology @@ -6315,6 +6446,7 @@ property_value: IAO:0000112 "my brain is part of my body (continuant parthood, t property_value: IAO:0000112 "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)" xsd:string property_value: IAO:0000112 "this day is part of this year (occurrent parthood)" xsd:string property_value: IAO:0000116 "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other." xsd:string +property_value: IAO:0000116 "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/" xsd:string property_value: IAO:0000116 "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" xsd:string property_value: IAO:0000116 "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." xsd:string property_value: IAO:0000118 "part_of" xsd:string @@ -6347,6 +6479,7 @@ property_value: IAO:0000112 "my body has part my brain (continuant parthood, two property_value: IAO:0000112 "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)" xsd:string property_value: IAO:0000112 "this year has part this day (occurrent parthood)" xsd:string property_value: IAO:0000116 "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part." xsd:string +property_value: IAO:0000116 "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/" xsd:string property_value: IAO:0000116 "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime" xsd:string property_value: IAO:0000116 "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'." xsd:string property_value: IAO:0000118 "has_part" xsd:string @@ -6802,22 +6935,30 @@ name: provides service [Typedef] id: RO:0000052 +name: characteristic of name: inheres in +def: "a relation between a specifically dependent continuant (the characteristic) and any other entity (the bearer), in which the characteristic depends on the bearer for its existence." [] def: "a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence" [] +comment: Note that this relation was previously called "inheres in", but was changed to be called "characteristic of" because BFO2 uses "inheres in" in a more restricted fashion. This relation differs from BFO2:inheres_in in two respects: (1) it does not impose a range constraint, and thus it allows qualities of processes, as well as of information entities, whereas BFO2 restricts inheres_in to only apply to independent continuants (2) it is declared functional, i.e. something can only be a characteristic of one thing. property_value: IAO:0000111 "inheres in" xsd:string property_value: IAO:0000112 "this fragility inheres in this vase" xsd:string +property_value: IAO:0000112 "this fragility is a characteristic of this vase" xsd:string property_value: IAO:0000112 "this red color inheres in this apple" xsd:string +property_value: IAO:0000112 "this red color is a characteristic of this apple" xsd:string property_value: IAO:0000116 "A dependent inheres in its bearer at all times for which the dependent exists." xsd:string property_value: IAO:0000118 "inheres_in" xsd:string property_value: RO:0001900 RO:0001901 -is_a: RO:0002314 ! inheres in part of +is_functional: true +is_a: RO:0002314 ! characteristic of part of inverse_of: RO:0000053 ! bearer of [Typedef] id: RO:0000053 name: bearer of name: bearer_of +name: has characteristic def: "a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence" [] +def: "Inverse of characteristic_of" [] property_value: IAO:0000111 "bearer of" xsd:string property_value: IAO:0000112 "this apple is bearer of this red color" xsd:string property_value: IAO:0000112 "this vase is bearer of this fragility" xsd:string @@ -6826,6 +6967,7 @@ property_value: IAO:0000118 "bearer_of" xsd:string property_value: IAO:0000118 "is bearer of" xsd:string property_value: RO:0001900 RO:0001901 range: BFO:0000020 ! specifically dependent continuant +is_inverse_functional: true [Typedef] id: RO:0000056 @@ -6883,6 +7025,7 @@ range: BFO:0000031 ! generically dependent continuant id: RO:0000079 name: function of def: "a relation between a function and an independent continuant (the bearer), in which the function specifically depends on the bearer for its existence" [] +comment: This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020. property_value: IAO:0000112 "this catalysis function is a function of this enzyme" xsd:string property_value: IAO:0000116 "A function inheres in its bearer at all times for which the function exists, however the function need not be realized at all the times that the function exists." xsd:string property_value: IAO:0000118 "function_of" xsd:string @@ -6895,6 +7038,7 @@ inverse_of: RO:0000085 ! has function id: RO:0000080 name: quality of def: "a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence" [] +comment: This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020. property_value: IAO:0000112 "this red color is a quality of this apple" xsd:string property_value: IAO:0000116 "A quality inheres in its bearer at all times for which the quality exists." xsd:string property_value: IAO:0000118 "is quality of" xsd:string @@ -6906,6 +7050,7 @@ inverse_of: RO:0000086 ! has quality id: RO:0000081 name: role of def: "a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence" [] +comment: This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020. property_value: IAO:0000112 "this investigator role is a role of this person" xsd:string property_value: IAO:0000116 "A role inheres in its bearer at all times for which the role exists, however the role need not be realized at all the times that the role exists." xsd:string property_value: IAO:0000118 "is role of" xsd:string @@ -6957,6 +7102,9 @@ inverse_of: RO:0000092 ! disposition of [Typedef] id: RO:0000092 name: disposition of +def: "inverse of has disposition" [] +comment: This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020. +subset: RO:0002259 is_a: RO:0000052 ! inheres in [Typedef] @@ -7036,6 +7184,15 @@ property_value: RO:0001900 RO:0001901 domain: BFO:0000040 ! material entity range: BFO:0000141 ! immaterial entity +[Typedef] +id: RO:0002012 +name: occurrent part of +def: "A part of relation that applies only between occurrents." [] +domain: BFO:0000003 ! occurrent +range: BFO:0000003 ! occurrent +is_a: BFO:0000050 ! part of +is_a: RO:0002418 ! causally upstream of or within + [Typedef] id: RO:0002013 name: has regulatory component activity @@ -7202,7 +7359,6 @@ id: RO:0002211 name: regulates def: "process(P1) regulates process(P2) iff: P1 results in the initiation or termination of P2 OR affects the frequency of its initiation or termination OR affects the magnitude or rate of output of P2." [] subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension -subset: http://purl.obolibrary.org/obo/valid_for_go_gp2term subset: http://purl.obolibrary.org/obo/valid_for_go_ontology subset: http://purl.obolibrary.org/obo/valid_for_gocam property_value: IAO:0000114 IAO:0000125 @@ -7229,7 +7385,6 @@ id: RO:0002212 name: negatively regulates def: "Process(P1) negatively regulates process(P2) iff: P1 terminates P2, or P1 descreases the the frequency of initiation of P2 or the magnitude or rate of output of P2." [] subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension -subset: http://purl.obolibrary.org/obo/valid_for_go_gp2term subset: http://purl.obolibrary.org/obo/valid_for_go_ontology subset: http://purl.obolibrary.org/obo/valid_for_gocam property_value: IAO:0000117 "Chris Mungall" xsd:string @@ -7246,7 +7401,6 @@ id: RO:0002213 name: positively regulates def: "Process(P1) postively regulates process(P2) iff: P1 initiates P2, or P1 increases the the frequency of initiation of P2 or the magnitude or rate of output of P2." [] subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension -subset: http://purl.obolibrary.org/obo/valid_for_go_gp2term subset: http://purl.obolibrary.org/obo/valid_for_go_ontology subset: http://purl.obolibrary.org/obo/valid_for_gocam property_value: IAO:0000117 "Chris Mungall" xsd:string @@ -7282,7 +7436,7 @@ name: capable of part of def: "c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p." [] property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000118 "has function in" xsd:string -property_value: seeAlso "defining-property-chains-involving-reflexivity" +property_value: seeAlso http://purl.obolibrary.org/obo/ro/docs/reflexivity/ holds_over_chain: RO:0002215 BFO:0000050 {http://purl.obolibrary.org/obo/RO_0002582="true"} is_a: RO:0002328 ! functionally related to is_a: RO:0002500 ! causal agent in process @@ -7296,11 +7450,13 @@ property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000118 "agent in" xsd:string is_a: ObsoleteProperty is_obsolete: true +replaced_by: RO:0002608 [Typedef] id: RO:0002218 name: has active participant name: obsolete has active participant +def: "OBSOLETE x has participant y if and only if x realizes some active role that inheres in y" [] def: "x has participant y if and only if x realizes some active role that inheres in y" [] subset: ro-eco property_value: IAO:0000112 "'heart development' has active participant some Shh protein" xsd:string @@ -7311,6 +7467,7 @@ property_value: IAO:0000118 "has agent" xsd:string property_value: IAO:0000412 http://purl.obolibrary.org/obo/ro.owl xsd:string is_a: RO:0000057 ! has_participant is_obsolete: true +replaced_by: RO:0002500 [Typedef] id: RO:0002222 @@ -7458,13 +7615,14 @@ is_a: RO:0004046 ! causally upstream of or within, negative effect [Typedef] id: RO:0002314 -name: inheres in part of -def: "q inheres in part of w if and only if there exists some p such that q inheres in p and p part of w." [] -property_value: IAO:0000116 "Because part_of is transitive, inheres in is a sub-relation of inheres in part of" xsd:string +name: characteristic of part of +def: "q characteristic of part of w if and only if there exists some p such that q inheres in p and p part of w." [] +property_value: IAO:0000116 "Because part_of is transitive, inheres in is a sub-relation of characteristic of part of" xsd:string property_value: IAO:0000117 "Chris Mungall" xsd:string +property_value: IAO:0000118 "inheres in part of" xsd:string property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/20064205 property_value: RO:0001900 RO:0001901 -property_value: seeAlso "defining-property-chains-involving-reflexivity" +property_value: seeAlso http://purl.obolibrary.org/obo/ro/docs/reflexivity/ holds_over_chain: RO:0000052 BFO:0000050 {http://purl.obolibrary.org/obo/RO_0002582="true"} is_a: RO:0002502 ! depends on transitive_over: BFO:0000050 ! part of @@ -7489,7 +7647,6 @@ property_value: IAO:0000118 "has" xsd:string property_value: IAO:0000118 "is catalyzing" xsd:string property_value: IAO:0000118 "is executing" xsd:string property_value: IAO:0000232 "This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized." xsd:string -property_value: IAO:0000232 "This relation is currently used experimentally by the Gene Ontology Consortium. It may not be stable and may be obsoleted at some future time." xsd:string is_a: RO:0002215 ! capable of inverse_of: RO:0002333 ! enabled by transitive_over: BFO:0000051 ! has part @@ -7722,12 +7879,12 @@ name: interacts with def: "A relationship that holds between two entities in which the processes executed by the two entities are causally connected." [] subset: ro-eco synonym: "in pairwise interaction with" EXACT [] -property_value: http://xmlns.com/foaf/0.1/page https://github.com/oborel/obo-relations/wiki/InteractionRelations xsd:anyURI +property_value: closeMatch http://purl.obolibrary.org/obo/MI_0914 xsd:anyURI property_value: IAO:0000116 "Considering relabeling as 'pairwise interacts with'" xsd:anyURI property_value: IAO:0000116 "This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact." xsd:string property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000232 "Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules." xsd:string -property_value: seeAlso http://purl.obolibrary.org/obo/MI_0914 xsd:anyURI +property_value: seeAlso http://purl.obolibrary.org/obo/ro/docs/interaction-relations/ xsd:anyURI domain: BFO:0000040 ! material entity range: BFO:0000040 ! material entity is_symmetric: true @@ -7736,11 +7893,11 @@ is_symmetric: true id: RO:0002436 name: molecularly interacts with def: "An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other." [] +property_value: closeMatch http://purl.obolibrary.org/obo/MI_0915 xsd:anyURI property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: IAO:0000118 "binds" xsd:string property_value: IAO:0000118 "molecularly binds with" xsd:string property_value: seeAlso ECO:0000353 -property_value: seeAlso http://purl.obolibrary.org/obo/MI_0915 xsd:anyURI is_symmetric: true is_a: RO:0002434 ! interacts with @@ -7858,9 +8015,9 @@ inverse_of: RO:0002566 ! causally influences [Typedef] id: RO:0002563 name: interaction relation helper property -property_value: http://xmlns.com/foaf/0.1/page https://github.com/oborel/obo-relations/wiki/InteractionRelations xsd:anyURI property_value: IAO:0000117 "Chris Mungall" xsd:string property_value: seeAlso http://ontologydesignpatterns.org/wiki/Submissions:N-Ary_Relation_Pattern_%28OWL_2%29 +property_value: seeAlso http://purl.obolibrary.org/obo/ro/docs/interaction-relations/ xsd:anyURI is_a: RO:0002464 ! helper property (not for use in curation) [Typedef] @@ -8113,3 +8270,42 @@ domain: BFO:0000040 ! material entity range: BFO:0000040 ! material entity is_a: RO:0002566 ! causally influences +[Typedef] +id: RO:0017001 +name: utilizes +def: "X utilizes Y means X and Y are material entities, and X is capable of some process P that has input Y." [] +property_value: IAO:0000112 "A diagnostic testing device utilizes a specimen." xsd:string +property_value: IAO:0000117 "Asiyah Lin" xsd:string +property_value: IAO:0000117 "https://orcid.org/0000-0001-9625-1899 Bill Duncan" xsd:string +property_value: IAO:0000232 "A diagnostic testing device utilizes a specimen means that the diagnostic testing device is capable of an assay, and this assay a specimen as its input." xsd:string +property_value: IAO:0000232 "See github ticket https://github.com/oborel/obo-relations/issues/497" xsd:string +holds_over_chain: RO:0002215 RO:0002233 +creation_date: 2021-11-08 + +[Typedef] +id: RO:0019000 +name: regulates characteristic +def: "A relationship that holds between a process and a characteristic in which process (P) regulates characteristic (C) iff: P results in the existence of C OR affects the intensity or magnitude of C." [] +property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-8688-6599 +domain: BFO:0000015 ! process +range: PATO:0000001 ! quality +holds_over_chain: RO:0002211 RO:0019000 +is_a: RO:0002410 ! causally related to + +[Typedef] +id: RO:0019001 +name: positively regulates characteristic +def: "A relationship that holds between a process and a characteristic in which process (P) positively regulates characteristic (C) iff: P results in an increase in the intensity or magnitude of C." [] +property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-8688-6599 +holds_over_chain: RO:0002213 RO:0019001 +is_a: RO:0019000 ! regulates characteristic + +[Typedef] +id: RO:0019002 +name: negatively regulates characteristic +def: "A relationship that holds between a process and a characteristic in which process (P) negatively regulates characteristic (C) iff: P results in a decrease in the intensity or magnitude of C." [] +property_value: http://purl.org/dc/terms/contributor https://orcid.org/0000-0002-8688-6599 +holds_over_chain: RO:0002212 RO:0019001 +holds_over_chain: RO:0002213 RO:0019002 +is_a: RO:0019000 ! regulates characteristic + diff --git a/omrse.owl b/omrse.owl index bc8debd..62cc900 100644 --- a/omrse.owl +++ b/omrse.owl @@ -10,6 +10,7 @@ xmlns:foaf="http://xmlns.com/foaf/0.1/" xmlns:obo1="http://purl.org/obo/owl/obo#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" + xmlns:skos="http://www.w3.org/2004/02/skos/core#" xmlns:swrl="http://www.w3.org/2003/11/swrl#" xmlns:swrla="http://swrl.stanford.edu/ontologies/3.3/swrla.owl#" xmlns:swrlb="http://www.w3.org/2003/11/swrlb#" @@ -18,7 +19,7 @@ xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + Daniel Welch Amanda Hicks Mathias Brochhausen @@ -29,7 +30,7 @@ This ontology grew out of efforts to represent the reality underlying the demographic information required by the US federal government's "meaningful use" criteria for electronic medical records and a presentation by Dr. William Hogan at the Electronic Health Record of the Future conference in Buffalo, NY http://ontology.buffalo.edu/EHR/Demographics_Hogan_Buffalo_2010_09_22.ppt The Ontology of Medically Related Social Entities 2020-10-27 - 2021-08-30 + 2022-04-06 @@ -969,6 +970,12 @@ EquivalentTo: xsd:integer[> 2151 , <= 2300] + + + + + + @@ -1015,6 +1022,7 @@ EquivalentTo: xsd:integer[> 2151 , <= 2300] this day is part of this year (occurrent parthood) a core relation that holds between a part and its whole Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other. + Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/ Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.) @@ -1059,6 +1067,7 @@ A continuant cannot be part of an occurrent: use 'participates in'. An this year has part this day (occurrent parthood) a core relation that holds between a whole and its part Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part. + Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/ Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.) @@ -1870,13 +1879,19 @@ We expect BFO 2.0 to have this relation as well, and we will obsolete this prope + inheres in this fragility inheres in this vase + this fragility is a characteristic of this vase this red color inheres in this apple + this red color is a characteristic of this apple + a relation between a specifically dependent continuant (the characteristic) and any other entity (the bearer), in which the characteristic depends on the bearer for its existence. a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence A dependent inheres in its bearer at all times for which the dependent exists. inheres_in + Note that this relation was previously called "inheres in", but was changed to be called "characteristic of" because BFO2 uses "inheres in" in a more restricted fashion. This relation differs from BFO2:inheres_in in two respects: (1) it does not impose a range constraint, and thus it allows qualities of processes, as well as of information entities, whereas BFO2 restricts inheres_in to only apply to independent continuants (2) it is declared functional, i.e. something can only be a characteristic of one thing. + characteristic of inheres in @@ -1885,10 +1900,12 @@ We expect BFO 2.0 to have this relation as well, and we will obsolete this prope + bearer of this apple is bearer of this red color this vase is bearer of this fragility + Inverse of characteristic_of a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist. bearer_of @@ -1896,6 +1913,7 @@ We expect BFO 2.0 to have this relation as well, and we will obsolete this prope bearer of bearer_of + has characteristic @@ -1989,6 +2007,7 @@ We expect BFO 2.0 to have this relation as well, and we will obsolete this prope A function inheres in its bearer at all times for which the function exists, however the function need not be realized at all the times that the function exists. function_of is function of + This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020. function of @@ -2004,6 +2023,7 @@ We expect BFO 2.0 to have this relation as well, and we will obsolete this prope A quality inheres in its bearer at all times for which the quality exists. is quality of quality_of + This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020. quality of @@ -2019,6 +2039,7 @@ We expect BFO 2.0 to have this relation as well, and we will obsolete this prope A role inheres in its bearer at all times for which the role exists, however the role need not be realized at all the times that the role exists. is role of role_of + This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020. role of @@ -2085,6 +2106,9 @@ We expect BFO 2.0 to have this relation as well, and we will obsolete this prope + inverse of has disposition + + This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020. disposition of @@ -2223,6 +2247,19 @@ We expect BFO 2.0 to have this relation as well, and we will obsolete this prope + + + + + + + + A part of relation that applies only between occurrents. + occurrent part of + + + + @@ -2531,7 +2568,6 @@ We expect BFO 2.0 to have this relation as well, and we will obsolete this prope regulates (processual) false - regulates @@ -2555,7 +2591,6 @@ We expect BFO 2.0 to have this relation as well, and we will obsolete this prope negatively regulates (process to process) - negatively regulates @@ -2584,7 +2619,6 @@ We expect BFO 2.0 to have this relation as well, and we will obsolete this prope positively regulates (process to process) - positively regulates @@ -2625,7 +2659,7 @@ We expect BFO 2.0 to have this relation as well, and we will obsolete this prope Chris Mungall has function in capable of part of - + @@ -2646,8 +2680,9 @@ We expect BFO 2.0 to have this relation as well, and we will obsolete this prope OBSOLETE x actively participates in y if and only if x participates in y and x realizes some active role Chris Mungall agent in + Obsoleted as the inverse property was obsoleted. - obsolete actively participates in + obsolete actively participates in true @@ -2659,11 +2694,13 @@ We expect BFO 2.0 to have this relation as well, and we will obsolete this prope 'heart development' has active participant some Shh protein + OBSOLETE x has participant y if and only if x realizes some active role that inheres in y x has participant y if and only if x realizes some active role that inheres in y This may be obsoleted and replaced by the original 'has agent' relation Chris Mungall has agent http://purl.obolibrary.org/obo/ro.owl + has active participant obsolete has active participant @@ -2891,13 +2928,14 @@ We expect BFO 2.0 to have this relation as well, and we will obsolete this prope - q inheres in part of w if and only if there exists some p such that q inheres in p and p part of w. - Because part_of is transitive, inheres in is a sub-relation of inheres in part of + q characteristic of part of w if and only if there exists some p such that q inheres in p and p part of w. + Because part_of is transitive, inheres in is a sub-relation of characteristic of part of Chris Mungall + inheres in part of - inheres in part of - + characteristic of part of + @@ -2944,7 +2982,6 @@ We expect BFO 2.0 to have this relation as well, and we will obsolete this prope is catalyzing is executing This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized. - This relation is currently used experimentally by the Gene Ontology Consortium. It may not be stable and may be obsoleted at some future time. enables @@ -3345,8 +3382,8 @@ Each of these 3 primitives can be composed to yield a cross-product of different in pairwise interaction with interacts with - http://purl.obolibrary.org/obo/MI_0914 - https://github.com/oborel/obo-relations/wiki/InteractionRelations + http://purl.obolibrary.org/obo/ro/docs/interaction-relations/ + http://purl.obolibrary.org/obo/MI_0914 @@ -3362,7 +3399,7 @@ Each of these 3 primitives can be composed to yield a cross-product of different molecularly binds with molecularly interacts with - http://purl.obolibrary.org/obo/MI_0915 + http://purl.obolibrary.org/obo/MI_0915 @@ -3564,7 +3601,7 @@ For example, A and B may be gene products and binding of B by A positively regul Chris Mungall interaction relation helper property - https://github.com/oborel/obo-relations/wiki/InteractionRelations + http://purl.obolibrary.org/obo/ro/docs/interaction-relations/ @@ -3966,15 +4003,79 @@ For example, A and B may be gene products and binding of B by A positively regul - + - + + + + + + A diagnostic testing device utilizes a specimen. + X utilizes Y means X and Y are material entities, and X is capable of some process P that has input Y. + Asiyah Lin + https://orcid.org/0000-0001-9625-1899 Bill Duncan + A diagnostic testing device utilizes a specimen means that the diagnostic testing device is capable of an assay, and this assay a specimen as its input. + See github ticket https://github.com/oborel/obo-relations/issues/497 + 2021-11-08 + utilizes + + + + + + + + + + + + + + + A relationship that holds between a process and a characteristic in which process (P) regulates characteristic (C) iff: P results in the existence of C OR affects the intensity or magnitude of C. + + regulates characteristic + + + + + + + + + + + + + A relationship that holds between a process and a characteristic in which process (P) positively regulates characteristic (C) iff: P results in an increase in the intensity or magnitude of C. + + positively regulates characteristic + + + + + + + + + + + + + + + + + A relationship that holds between a process and a characteristic in which process (P) negatively regulates characteristic (C) iff: P results in a decrease in the intensity or magnitude of C. + + negatively regulates characteristic + - + - + @@ -5000,6 +5101,12 @@ For example, A and B may be gene products and binding of B by A positively regul + + + + + + quality Quality the ambient temperature of this portion of air @@ -5924,7 +6031,7 @@ For example, A and B may be gene products and binding of B by A positively regul - + The internally coordinated responses (actions or inactions) of animals (individuals or groups) to internal or external stimuli, via a mechanism that involves nervous system activity. Wikipedia:Behavior 1. Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation reviews. @@ -5995,15 +6102,6 @@ For example, A and B may be gene products and binding of B by A positively regul - - - - - response to stimulus - - - - @@ -10276,7 +10374,7 @@ Is part_of the appropriate relation to use for data items and documented identit - + Tammy's owner role with regards to the house on 234 Evergreen Terrace; Walter's owner role with regards to the intellectual property on his movie script A role in a human social process that is based on a social act and whose bearer exercises exclusive control over a property, where this control is permitted by one or more deontic roles, which are parts of the owner role. Mathias Brochhausen @@ -11306,7 +11404,7 @@ edited date: 30 SEPT 2015 - + @@ -11444,7 +11542,7 @@ edited date: 30 SEPT 2015 - + @@ -11690,38 +11788,13 @@ edited date: 30 SEPT 2015 - - - - - - - - - - - - - - - - - - - - - - - - - - - + A role inhering in an entity realized by social interactions in human society. Mathias Brochhausen http://purl.obolibrary.org/obo/omrse.owl Previous definition: A role played by an entity in human social processes. - role in human social processes + obsolete role in human social processes + true @@ -11729,8 +11802,8 @@ edited date: 30 SEPT 2015 - + A role in human social processes that inheres in an organization. William R. Hogan Defined class that we will ultimately move to an application ontology. We are leaving here for now until we determine which application ontology: it is likely going to be an ontology that does not currently (2012-06-05) exist. @@ -11744,8 +11817,8 @@ Ditto for its current descendants. - + A role in human social processes that inheres in an organism. William R. Hogan Mathias Brochhausen @@ -11940,7 +12013,7 @@ Amanda Hicks - + @@ -12266,7 +12339,7 @@ Note: this definition was taken over from "geopolitical organization". - A healthcare provider role that inheres in an organization and is realized by providing inpatient and outpatient care. + A healthcare provider role that inheres in an organization and is realized by providing inpatient care. Mathias Brochhausen hospital role @@ -12784,49 +12857,45 @@ A patient sustaining an injury who has been admitted to the hospital, transferre - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A role in human social processes that, if realized, is realized when the bearer provides labor or services in exchange for a wage or salary as specified by some deontic declaration. Amanda hicks employee @@ -12989,7 +13058,7 @@ last accessed June 30, 2015 - + @@ -13109,11 +13178,11 @@ last accessed June 30, 2015 - + - + @@ -13239,7 +13308,7 @@ last accessed June 30, 2015 - + payer role @@ -14445,6 +14514,14 @@ Somehow involves skilled nursing encounters + + + + + + + A process (1) where the active participant, who at the beginning of the process is located in a healthcare facility, exits the facility and no longer stands in a "located in" relationship to the facility and (2) is immediately preceded by a healthcare encounter in which the active participant also participated. + William R. Hogan leaving a health care facility after receiving care @@ -14851,26 +14928,15 @@ Somehow involves skilled nursing encounters - - - - - - - - - - - - - + A process in which some participant shares some information content entity about some state of that participant with some other participant. S. Clint Dowland Mathias Brochhausen Matthew Diller William R. Hogan The term 'participant' in the definition need not refer to a human agent. - communication + obsolete communication + true @@ -14878,25 +14944,14 @@ Somehow involves skilled nursing encounters - - - - - - - - - - - - - + A disposition inhering in a material entity that, if realized, is realized by that material entity’s communicating via some linguistic concretization. S. Clint Dowland Mathias Brochhausen Matthew Diller William R. Hogan - linguistic competence + obsolete linguistic competence + true @@ -14904,33 +14959,14 @@ Somehow involves skilled nursing encounters - - - - - - - - - - - - - - - - - - - - - + A disposition inhering in a linguistic community that (i) is a maximal aggregate of communicatively compatible linguistic competences, and (ii) if realized, is realized by any and all realizations of those linguistic competences. William R. Hogan Mathias Brochhausen Matthew Diller S. Clint Dowland - language + obsolete language + true @@ -14939,58 +14975,40 @@ Somehow involves skilled nursing encounters - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + - A maximal aggregate of material entities such that each member bears a linguistic competence for the same language. - Matthew Diller - Mathias Brochhausen - S. Clint Dowland - William R. Hogan - linguistic community - - - - - - + + + + + + + + + + + + + + + + + A maximal aggregate of material entities such that each member bears a linguistic competence for the same language. + Matthew Diller + Mathias Brochhausen + S. Clint Dowland + William R. Hogan + linguistic community + + + + + + @@ -15015,7 +15033,8 @@ Somehow involves skilled nursing encounters Mathias Brochhausen Matthew Diller William R. Hogan - expression of preferred language + obsolete expression of preferred language + true @@ -15023,41 +15042,14 @@ Somehow involves skilled nursing encounters - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + An information content entity that (i) is about some person, some language, and some linguistic competence; and (ii) conveys the language with which that person prefers to communicate within some given context. Mathias Brochhausen Matthew Diller S. Clint Dowland William R. Hogan - preferred language information content entity + obsolete preferred language information content entity + true @@ -15065,7 +15057,7 @@ Somehow involves skilled nursing encounters - + a communication in which some participant requests of some other participant an information content entity about some portion of reality S. Clint Dowland As with the parent class, 'participant' in the definition need not refer to a human agent. @@ -15922,7 +15914,7 @@ On the other hand, in the case of those who are self-taught by reading books or - completing a program of eduction + completing a program of education An educating that realizes a concretization of some program of education. William R. Hogan Note that parent class 'educating' and referenced class 'program of education' are defined elsewhere in this education module of OMRSE. @@ -16385,7 +16377,7 @@ On the other hand, in the case of those who are self-taught by reading books or highest level of education socio-economic data item - A socio-economic data item that is about a person and their completion of an education program (and its type), where that education progam is the last one in a sequence (of education programs) that the person has completed, where each education program completed except the last one is a pre-requisite to the education program completed after it. + A socio-economic data item that is about a person and their completion of an education program (and its type), where that education program is the last one in a sequence (of education programs) that the person has completed, where each education program completed except the last one is a pre-requisite to the education program completed after it. William R. Hogan This data item in a typical attribute-value system such as table, XML, JSON takes values like "secondary education", "Associate Degree", "Bachelor Degree", "High School", and so on. highest level of education data item @@ -16419,7 +16411,7 @@ On the other hand, in the case of those who are self-taught by reading books or William R. Hogan http://uis.unesco.org/sites/default/files/documents/international-standard-classification-of-education-isced-2011-en.pdf Vocational education programs are designed for learners to acquire the knowledge, skills and competencies specific to a particular occupation, trade, or class of occupations or trades. Such programs may have work-based components (e.g. apprenticeships, dual-system education programmes). Successful completion of such programs leads to labor market-relevant, vocational qualifications acknowledged as occupationally-oriented by the relevant national authorities and/or the labor market. - vocational education program + vocational education program @@ -16431,9 +16423,9 @@ On the other hand, in the case of those who are self-taught by reading books or kindergarten education plan specification A primary education plan specification that specifies the competencies and information content entities that should be acquired by students in the first year of primary education in the United States. William R. Hogan - kindergarten education program 2020-09-02T12:38:43Z + kindergarten education program @@ -16646,127 +16638,501 @@ It indicates that a person has completed only early childhood education and noth - - - - - An information content entity that is the specified outcome of and documents the sucessful completion of a tertiary education program. - John Judkins - Mathias Brochhausen - Recognized degree awarded after successful completion of a college or post-graduate porgram. - academic degree - - - - - - - - - An academic degree awarded by colleges and universities upon completion of a program of study lasting two years. - John Judkins - Mathias Brochhausen - https://en.wikipedia.org/w/index.php?title=Associate_degree&oldid=723897149 - Recognition awarded after completion of a specific curriculum from an accredited tertiary education provider that falls between high school and bachelor's degree program. - associate degree - - - - - - - - - An academic degree awarded by universities upon completion of a course of study demonstrating a mastery or high-order overview of a specific field of study or area of professional practice.[1] Within the area studied, graduates are posited to possess advanced knowledge of a specialized body of theoretical and applied topics; high order skills in analysis, critical evaluation, or professional application; and the ability to solve complex problems and think rigorously and independently. - John Judkins - Mathias Brochhausen - https://en.wikipedia.org/w/index.php?title=Master%27s_degree&oldid=726036185 - master's degree - - - - - + - - - An academic degree awarded by colleges and universities upon completion of a course of study lasting three to seven years. - John Judkins - Mathias Brochhausen - https://en.wikipedia.org/w/index.php?title=Bachelor%27s_degree&oldid=725713923 - bachelor's degree + + + Examples of monetary forms of payment include: wages, salary, or tips; interest generated by capital; dividends earned; lottery, game, or contest monetary winnings; alimony; royalties; trusts; pensions; receipt of rental payments; unemployment payments; social security payments; worker's compensation; social security payments; or profit from entrepreneurial activities. + A data item that is about the sum of earnings for some person(s) from various forms of payment or profits. + Matthew Diller + Chris Stoeckert + We use the phrase ‘some person’ in the definition because this class can be about an individual's or a household's earnings. Similarly, we use 'personal income' in the label because the term is typically restricted to individuals and households. This class is also restricted to being about monetary forms of income. + monetary personal income data item - + - - - An academic degree in the science and principles of nursing, granted by an accredited tertiary education provider after the successful completion of a bachelor's of nursing program. - John Judkins - Mathias Brochhausen - https://en.wikipedia.org/w/index.php?title=Bachelor_of_Science_in_Nursing&oldid=725962822 - bachelor's of nursing degree + + + + + + + + + + + + + + + + + + + + + + + + + Taking notes on a meeting is an example in which the concretization relation is newly established, since the SDCs that concretize the GDCs come into existence as the notes are written. In contrast, using slides prepared by someone else in order to convey information during a presentation is a case of using a concretization in which the performer neither brings the concretizing SDCs into existence nor is responsible for their standing in the concretization relation to the relevant GDCs. A nonlinguistic example is drawing the logo of one’s favorite brand, in which one creates a pattern that concretizes a GDC that is also concretized by patterns on products of the brand. + Process in which some participant utilizes some specifically dependent continuant as a concretization of some generically dependent continuant. + S. Clint Dowland + Matthew Diller + Sarah Bost + William R. Hogan + Instances include any process that brings it about that some specifically dependent continuant begins to stand in a concretization relation to some generically dependent continuant, as well as any process in which someone makes use of a pre-established concretization relation. To be clear, instances do not include using concretizations of words or letters for purposes that do not make use of the concretization relations in which they stand (for example, hanging up a sign in a foreign language as a decoration because one likes the colors, despite having no idea what the sign says). + Instances include, but are not limited to, processes that bring about cognitive concretizations. + concretization-utilization process - + - - - An academic degree in the science and principles of nursing, granted by an accredited tertiary education provider after the successful completion of a master's of nursing program. - John Judkins - Mathias Brochhausen - An advanced academic degree in the principles and practices of nursing, with a focus on administration, education, or advanced nursing practice, granted by an accredited college or university after the successful completion of a master's of nursing program. - master's in the science of nursing degree + + + + + + + + + + + + + + + + + + + A concretization-utilization process in which the utilized specifically dependent continuant concretizes the generically dependent through use of some language. + S. Clint Dowland + Matthew Diller + Sarah Dowland + William R. Hogan + linguistic concretization-utilization process - + - - - morphology - A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure. - - morphology + + + + + + + + + + + + + + + For example, reading a text message that says, “It is raining outside,” and inferring that the words on the screen are meant to convey information about the weather. The pattern on the screen that corresponds to the words is the SDC, and the ICE about the rain is the GDC. Or, hearing your spouse say, “Can you come to the kitchen?” and then knowing that your spouse wants you to come to the kitchen. You have interpreted the patterns of the sound as concretizing a GDC about what your spouse wants. Or, seeing a drawing of a basketball player and inferring—perhaps incorrectly—that it is of Michael Jordan. + Process in which some participant infers that some particular specifically dependent continuant stands in the concretization relation to some particular generically dependent continuant. + S. Clint Dowland + Matthew Diller + Sarah Bost + William R. Hogan + The interpretation need not be accurate. It may even be the case that the specifically dependent continuant has not previously concretized anything. + concretization-interpretation process - + - - - length - A 1-D extent quality which is equal to the distance between two points. - - length + + + + + + + + + + + + + + + + + + + A concretization-interpretation process in which the specifically dependent continuant is inferred to concretize the generically dependent continuant in a way that makes use of some language. + S. Clint Dowland + Matthew Diller + Sarah Bost + William R. Hogan + linguistic concretization-interpretation process - + - - - mass - A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter. - - mass + + + + + + + + + + + + + + + + + + + + + + A disposition that inheres in some material entity and is such that that, if realized, it is realized by either some linguistic concretization-utilization process or some linguistic concretization-interpretation process. + S. Clint Dowland + Mathias Brochhausen + Matthew Diller + William R. Hogan + When realized in a concretization-utilization process, the only relevant concretization may in some cases be a cognitive one, but that suffices to realize a linguistic competence. For example, suppose one begins to write a letter, planning out the words ahead of time, but is interrupted before beginning to write and never resumes. During the process of planning out the words and what one intends to communicate, one is already concretizing words cognitively, as well as considering which combinations of words one can use to concretize additional generically dependent continuants. In doing so, one performs processes that realize one's linguistic competence, without producing any concretizations other than those cognitive ones. + linguistic competence - + - - - physical quality - A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities. + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A process in which some participant shares some generically dependent continuant with some other participant. The former utilizes some specifically dependent continuant that concretizes the generically dependent continuant intended to be shared, while the latter interprets that specifically dependent continuant to concretize some particular generically dependent continuant, aiming to accurately infer the other participant’s intent. + S. Clint Dowland + Mathias Brochhausen + Matthew Diller + William R. Hogan + For example, if you tell someone, “It is raining,” you produce sounds that have patterns that concretize information about the weather. Your utilization of that concretization is part of the communication. When the other person hears you, they interpret those patterns to concretize something, which may or may not be the same as what you intended to convey. In other words, they interpret the sounds you produce to have meanings associated with them, and that interpretation process is another part of the communication. If a process does not have a part of each type, it is not a communication. + The interpretation need not correspond exactly to what was intended by the other participant. + The term 'participant' in the definition need not refer to a human agent. + communication + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A disposition that (i) is an aggregate of linguistic competences, considered as forming a distinct group on the basis of perceived common characteristics, such as mutual intelligibility among their bearers, in addition to historical or cultural factors; (ii) if realized, is realized in any and all realizations of those linguistic competences; and (iii) inheres in a linguistic community. + William R. Hogan + Mathias Brochhausen + Matthew Diller + S. Clint Dowland + language + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A communication in which some participant states a preference for some communicative process to be in a certain language, via some concretization of some preferred language information content entity. + S. Clint Dowland + Mathias Brochhausen + Matthew Diller + William R. Hogan + disclosure of preferred language + + + + + + + + + + + + + + + + + + + + + An information content entity that is about some person and some language, and that conveys the language with which that person prefers to communicate within some given context. + Mathias Brochhausen + Matthew Diller + S. Clint Dowland + William R. Hogan + preferred language information content entity + + + + + + + + + + + + + + + A role inhering in an entity realized by social interactions in human society. + Matthew Diller + Mathias Brochhausen + Previous definition: A role played by an entity in human social processes. + role in human social processes + + + + + + + + + An information content entity that is the specified outcome of and documents the sucessful completion of a tertiary education program. + John Judkins + Mathias Brochhausen + Recognized degree awarded after successful completion of a college or post-graduate porgram. + academic degree + + + + + + + + + An academic degree awarded by colleges and universities upon completion of a program of study lasting two years. + John Judkins + Mathias Brochhausen + https://en.wikipedia.org/w/index.php?title=Associate_degree&oldid=723897149 + Recognition awarded after completion of a specific curriculum from an accredited tertiary education provider that falls between high school and bachelor's degree program. + associate degree + + + + + + + + + An academic degree awarded by universities upon completion of a course of study demonstrating a mastery or high-order overview of a specific field of study or area of professional practice.[1] Within the area studied, graduates are posited to possess advanced knowledge of a specialized body of theoretical and applied topics; high order skills in analysis, critical evaluation, or professional application; and the ability to solve complex problems and think rigorously and independently. + John Judkins + Mathias Brochhausen + https://en.wikipedia.org/w/index.php?title=Master%27s_degree&oldid=726036185 + master's degree + + + + + + + + + An academic degree awarded by colleges and universities upon completion of a course of study lasting three to seven years. + John Judkins + Mathias Brochhausen + https://en.wikipedia.org/w/index.php?title=Bachelor%27s_degree&oldid=725713923 + bachelor's degree + + + + + + + + + An academic degree in the science and principles of nursing, granted by an accredited tertiary education provider after the successful completion of a bachelor's of nursing program. + John Judkins + Mathias Brochhausen + https://en.wikipedia.org/w/index.php?title=Bachelor_of_Science_in_Nursing&oldid=725962822 + bachelor's of nursing degree + + + + + + + + + An academic degree in the science and principles of nursing, granted by an accredited tertiary education provider after the successful completion of a master's of nursing program. + John Judkins + Mathias Brochhausen + An advanced academic degree in the principles and practices of nursing, with a focus on administration, education, or advanced nursing practice, granted by an accredited college or university after the successful completion of a master's of nursing program. + master's in the science of nursing degree + + + + + + + + + quality (PATO) + quality + + + + + + + + + morphology + A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure. + + morphology + + + + + + + + + length + A 1-D extent quality which is equal to the distance between two points. + + length + + + + + + + + + mass + A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter. + + mass + + + + + + + + + physical quality + A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities. physical quality @@ -17244,6 +17610,12 @@ It indicates that a person has completed only early childhood education and noth + + + + + + @@ -17289,13 +17661,22 @@ It indicates that a person has completed only early childhood education and noth - + + + + + + + + + + - + - + @@ -17353,6 +17734,178 @@ It indicates that a person has completed only early childhood education and noth + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + true MF(X)-directly_regulates->MF(Y)-enabled_by->GP(Z) => MF(Y)-has_input->GP(Y) e.g. if 'protein kinase activity'(X) directly_regulates 'protein binding activity (Y)and this is enabled by GP(Z) then X has_input Z @@ -17611,51 +18164,6 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase - - This rule is dubious: added as a quick fix for expected inference in GO-CAM. The problem is most acute for transmembrane proteins, such as receptors or cell adhesion molecules, which have some subfunctions inside the cell (e.g. kinase activity) and some subfunctions outside (e.g. ligand binding). Correct annotation of where these functions occurs leads to incorrect inference about the location of the whole protein. This should probably be weakened to "... -> overlaps" - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - If a molecular function (X) has a regulatory subfunction, then any gene product which is an input to that subfunction has an activity that directly_regulates X. Note: this is intended for cases where the regaultory subfunction is protein binding, so it could be tightened with an additional clause to specify this. inferring direct reg edge from input to regulatory subfunction @@ -18256,6 +18764,94 @@ e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +