Merge pull request #279 from mcwdsi/issue276_indvhealthcareprovider

Closes issue #275, closes issue #276, and closes issue #277: deprecat…

Author: dexink

src/ontology/omrse-edit.owl

@@ -337,6 +337,7 @@ Declaration(Class(obo:OMRSE_00000293))
 Declaration(Class(obo:OMRSE_00000294))
 Declaration(Class(obo:OMRSE_00000295))
 Declaration(Class(obo:OMRSE_00000296))
+Declaration(Class(obo:OMRSE_00000300))
 Declaration(Class(obo:OMRSE_00000500))
 Declaration(Class(obo:OMRSE_00000501))
 Declaration(Class(obo:OMRSE_00000502))
@@ -755,19 +756,18 @@ AnnotationAssertion(rdfs:label obo:OMRSE_00000009 "female gender role"@en)
 SubClassOf(obo:OMRSE_00000009 obo:OMRSE_00000007)
 SubClassOf(obo:OMRSE_00000009 ObjectIntersectionOf(ObjectSomeValuesFrom(obo:RO_0000052 obo:OBI_0100026) ObjectAllValuesFrom(obo:RO_0000052 obo:OBI_0100026)))
 
-# Class: obo:OMRSE_00000010 (human health care role)
+# Class: obo:OMRSE_00000010 (health care role)
 
 AnnotationAssertion(obo:IAO_0000115 obo:OMRSE_00000010 "A role in human social processes that is realized by health care processes such as seeking or providing treatment for disease and injury, diagnosing disease and injury, or undergoing diagnosis."@en)
 AnnotationAssertion(obo:IAO_0000117 obo:OMRSE_00000010 "Mathias Brochhausen")
 AnnotationAssertion(obo:IAO_0000117 obo:OMRSE_00000010 "William R. Hogan"@en)
-AnnotationAssertion(obo:IAO_0000118 obo:OMRSE_00000010 "health care role"@en)
-AnnotationAssertion(rdfs:label obo:OMRSE_00000010 "human health care role"@en)
+AnnotationAssertion(rdfs:label obo:OMRSE_00000010 "health care role"@en)
 SubClassOf(obo:OMRSE_00000010 obo:OMRSE_00002072)
 SubClassOf(obo:OMRSE_00000010 ObjectSomeValuesFrom(obo:BFO_0000054 obo:OGMS_0000097))
 
 # Class: obo:OMRSE_00000011 (patient role)
 
-AnnotationAssertion(obo:IAO_0000115 obo:OMRSE_00000011 "A role borne by an organism and that is realized by presenting to a health care provider in a clinical encounter."@en)
+AnnotationAssertion(obo:IAO_0000115 obo:OMRSE_00000011 "A health care role borne by an organism and that is realized by presenting to a health care provider in a clinical encounter."@en)
 AnnotationAssertion(obo:IAO_0000117 obo:OMRSE_00000011 "Amanda Hicks"@en)
 AnnotationAssertion(obo:IAO_0000117 obo:OMRSE_00000011 "Mathias Brochhausen"@en)
 AnnotationAssertion(obo:IAO_0000118 obo:OMRSE_00000011 "patient"@en)
@@ -779,7 +779,7 @@ SubClassOf(obo:OMRSE_00000011 ObjectSomeValuesFrom(obo:RO_0000052 obo:OBI_010002
 
 # Class: obo:OMRSE_00000012 (health care provider role)
 
-AnnotationAssertion(obo:IAO_0000115 obo:OMRSE_00000012 "A human health care role inhering in an organization or human being that is realized by a process of providing health care services to an organism."@en)
+AnnotationAssertion(obo:IAO_0000115 obo:OMRSE_00000012 "A health care role inhering in an organization or human being that is realized by a process of providing health care services to an organism."@en)
 AnnotationAssertion(obo:IAO_0000117 obo:OMRSE_00000012 "Mathias Brochhausen"@en)
 AnnotationAssertion(obo:IAO_0000117 obo:OMRSE_00000012 "William R. Hogan"@en)
 AnnotationAssertion(rdfs:label obo:OMRSE_00000012 "health care provider role"@en)
@@ -793,7 +793,7 @@ AnnotationAssertion(obo:IAO_0000117 obo:OMRSE_00000013 "Mathias Brochhausen"@en)
 AnnotationAssertion(obo:IAO_0000118 obo:OMRSE_00000013 "physician"@en)
 AnnotationAssertion(obo:IAO_0000119 obo:OMRSE_00000013 "http://en.wikipedia.org/wiki/Physician"@en)
 AnnotationAssertion(rdfs:label obo:OMRSE_00000013 "physician role"@en)
-SubClassOf(obo:OMRSE_00000013 obo:OMRSE_00000012)
+SubClassOf(obo:OMRSE_00000013 obo:OMRSE_00000300)
 SubClassOf(obo:OMRSE_00000013 ObjectSomeValuesFrom(obo:RO_0000052 obo:NCBITaxon_9606))
 
 # Class: obo:OMRSE_00000014 (nurse role)
@@ -803,7 +803,7 @@ AnnotationAssertion(obo:IAO_0000117 obo:OMRSE_00000014 "Mathias Brochhausen"@en)
 AnnotationAssertion(obo:IAO_0000118 obo:OMRSE_00000014 "nurse"@en)
 AnnotationAssertion(obo:IAO_0000119 obo:OMRSE_00000014 "based on: http://en.wikipedia.org/wiki/Nursing"@en)
 AnnotationAssertion(rdfs:label obo:OMRSE_00000014 "nurse role"@en)
-SubClassOf(obo:OMRSE_00000014 obo:OMRSE_00000012)
+SubClassOf(obo:OMRSE_00000014 obo:OMRSE_00000300)
 SubClassOf(obo:OMRSE_00000014 ObjectSomeValuesFrom(obo:RO_0000052 obo:NCBITaxon_9606))
 
 # Class: obo:OMRSE_00000015 (health care provider organization role)
@@ -815,10 +815,11 @@ AnnotationAssertion(rdfs:label obo:OMRSE_00000015 "health care provider organiza
 SubClassOf(obo:OMRSE_00000015 obo:OMRSE_00000027)
 SubClassOf(obo:OMRSE_00000015 ObjectSomeValuesFrom(obo:BFO_0000054 obo:OGMS_0000097))
 
-# Class: obo:OMRSE_00000016 (person health care provider role)
+# Class: obo:OMRSE_00000016 (obsolete person health care provider role)
 
-AnnotationAssertion(rdfs:label obo:OMRSE_00000016 "person health care provider role"@en)
-SubClassOf(obo:OMRSE_00000016 obo:OMRSE_00000001)
+AnnotationAssertion(rdfs:label obo:OMRSE_00000016 "obsolete person health care provider role"@en)
+AnnotationAssertion(owl:deprecated obo:OMRSE_00000016 "true"^^xsd:boolean)
+SubClassOf(obo:OMRSE_00000016 oboInOwl:ObsoleteClass)
 
 # Class: obo:OMRSE_00000017 (physician practice)
 
@@ -1240,7 +1241,7 @@ AnnotationAssertion(obo:IAO_0000119 obo:OMRSE_00000066 "The following definition
 
 \"A trauma patient who is under the age of 15 years.\""@en)
 AnnotationAssertion(rdfs:label obo:OMRSE_00000066 "pediatric trauma patient role"@en)
-SubClassOf(obo:OMRSE_00000066 obo:OMRSE_00000030)
+SubClassOf(obo:OMRSE_00000066 obo:OMRSE_00000073)
 
 # Class: obo:OMRSE_00000067 (injured patient role)
 
@@ -1706,7 +1707,7 @@ SubClassOf(obo:OMRSE_00000128 oboInOwl:ObsoleteClass)
 
 AnnotationAssertion(obo:IAO_0000115 obo:OMRSE_00000129 "A human health care provider role that inheres in a human being that is created by state licensing and that is realized by taking patient histories, performing physical exams, diagnosing illnesses, developing treatment plans, ordering lab tests, prescribing medications, counselling and educating patients, suturing wounds, and assisting in surgery under the supervision of a physician or a surgeon."@en)
 AnnotationAssertion(rdfs:label obo:OMRSE_00000129 "US physician assistant role"@en)
-SubClassOf(obo:OMRSE_00000129 obo:OMRSE_00000012)
+SubClassOf(obo:OMRSE_00000129 obo:OMRSE_00000300)
 SubClassOf(obo:OMRSE_00000129 ObjectSomeValuesFrom(obo:RO_0000052 obo:NCBITaxon_9606))
 
 # Class: obo:OMRSE_00000130 (anesthesiologist role)
@@ -1761,6 +1762,9 @@ SubClassOf(obo:OMRSE_00000138 oboInOwl:ObsoleteClass)
 
 # Class: obo:OMRSE_00000139 (surgeon role)
 
+AnnotationAssertion(obo:IAO_0000115 obo:OMRSE_00000139 "A physician role that, if realized, is realized by its bearer using operative manual and instrumental techniques to investigate, treat, or modify a patient's anatomical or physiological state for health, functional, or aesthetic purposes."@en)
+AnnotationAssertion(obo:IAO_0000117 obo:OMRSE_00000139 "Matthew Diller"@en)
+AnnotationAssertion(dc:contributor obo:OMRSE_00000139 "William R. Hogan"@en)
 AnnotationAssertion(rdfs:label obo:OMRSE_00000139 "surgeon role"@en)
 SubClassOf(obo:OMRSE_00000139 obo:OMRSE_00000013)
 SubClassOf(obo:OMRSE_00000139 ObjectSomeValuesFrom(obo:BFO_0000054 obo:OAE_0000067))
@@ -1823,7 +1827,7 @@ SubClassOf(obo:OMRSE_00000146 ObjectIntersectionOf(ObjectSomeValuesFrom(obo:BFO_
 
 # Class: obo:OMRSE_00000147 (pediatric surgeon role)
 
-AnnotationAssertion(obo:IAO_0000115 obo:OMRSE_00000147 "A surgeon role borne by a human being and that, if realized, is realized by its bearer using operative manual and instrumental techniques on preadult patients to investigate and/or treat a pathological condition such as disease or injury, to help improve bodily function or appearance or to repair unwanted ruptured areas."@en)
+AnnotationAssertion(obo:IAO_0000115 obo:OMRSE_00000147 "A surgeon role that, if realized, is realized by its bearer by performing procedures on a child."@en)
 AnnotationAssertion(obo:IAO_0000117 obo:OMRSE_00000147 "Amanda Hicks")
 AnnotationAssertion(rdfs:label obo:OMRSE_00000147 "pediatric surgeon role"@en)
 SubClassOf(obo:OMRSE_00000147 obo:OMRSE_00000139)
@@ -2727,7 +2731,7 @@ AnnotationAssertion(obo:IAO_0000117 obo:OMRSE_00000249 "Matthew Diller"@en)
 AnnotationAssertion(obo:IAO_0000118 obo:OMRSE_00000249 "skilled birth attendant role"@en)
 AnnotationAssertion(dc:contributor obo:OMRSE_00000249 "https://orcid.org/0000-0001-6595-0902")
 AnnotationAssertion(rdfs:label obo:OMRSE_00000249 "birth attendant role"@en)
-SubClassOf(obo:OMRSE_00000249 obo:OMRSE_00000012)
+SubClassOf(obo:OMRSE_00000249 obo:OMRSE_00000300)
 
 # Class: obo:OMRSE_00000250 (linguistic competence information content entity)
 
@@ -3114,6 +3118,16 @@ AnnotationAssertion(rdfs:label obo:OMRSE_00000296 "gender identity"@en)
 SubClassOf(obo:OMRSE_00000296 obo:OMRSE_00000278)
 SubClassOf(obo:OMRSE_00000296 ObjectSomeValuesFrom(obo:RO_0000059 ObjectIntersectionOf(obo:BFO_0000031 ObjectIntersectionOf(ObjectSomeValuesFrom(obo:IAO_0000136 obo:NCBITaxon_9606) ObjectSomeValuesFrom(obo:IAO_0000136 obo:OMRSE_00000291)))))
 
+# Class: obo:OMRSE_00000300 (institutional health care provider role)
+
+AnnotationAssertion(obo:IAO_0000115 obo:OMRSE_00000300 "A human role within an organization that itself bears a healthcare provider organization role."@en)
+AnnotationAssertion(obo:IAO_0000117 obo:OMRSE_00000300 "Matthew Diller"@en)
+AnnotationAssertion(obo:IAO_0000118 obo:OMRSE_00000300 "human role within a healthcare organization"@en)
+AnnotationAssertion(dc:contributor obo:OMRSE_00000300 "Colbie Reed"@en)
+AnnotationAssertion(dc:contributor obo:OMRSE_00000300 "William R. Hogan"@en)
+AnnotationAssertion(rdfs:label obo:OMRSE_00000300 "institutional health care provider role"@en)
+SubClassOf(obo:OMRSE_00000300 obo:OMRSE_00000086)
+
 # Class: obo:OMRSE_00000500 (job role data item)
 
 AnnotationAssertion(obo:IAO_0000112 obo:OMRSE_00000500 "Can be about any aspect of employment, such as salary, work location, or employer."@en)