From 11978f01a60847dca1f8d7bffa9d2ce12e8e44b5 Mon Sep 17 00:00:00 2001 From: Diller Date: Mon, 22 Mar 2021 16:55:50 -0400 Subject: [PATCH 1/2] Preparing for new release. --- omrse-base.json | 4 ++-- omrse-base.obo | 4 ++-- omrse-base.owl | 4 ++-- omrse-full.json | 4 ++-- omrse-full.obo | 4 ++-- omrse-full.owl | 4 ++-- omrse.json | 4 ++-- omrse.obo | 4 ++-- omrse.owl | 4 ++-- omrse/catalog-v001.xml | 10 ++++++++++ omrse/language/catalog-v001.xml | 7 +++++++ 11 files changed, 35 insertions(+), 18 deletions(-) create mode 100644 omrse/catalog-v001.xml create mode 100644 omrse/language/catalog-v001.xml diff --git a/omrse-base.json b/omrse-base.json index 1afca2b..07cdbdc 100644 --- a/omrse-base.json +++ b/omrse-base.json @@ -2000,11 +2000,11 @@ }, { "pred": "http://www.w3.org/2002/07/owl#versionInfo", - "val": "2021-03-05" + "val": "2021-03-22" } ], "subsets": [], - "version": "http://purl.obolibrary.org/obo/omrse/releases/2021-03-05/omrse-base.json", + "version": "http://purl.obolibrary.org/obo/omrse/releases/2021-03-22/omrse-base.json", "xrefs": [] }, "nodes": [ diff --git a/omrse-base.obo b/omrse-base.obo index f2ae79c..264d701 100644 --- a/omrse-base.obo +++ b/omrse-base.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: omrse/releases/2021-03-05/omrse-base.owl +data-version: omrse/releases/2021-03-22/omrse-base.owl remark: This ontology grew out of efforts to represent the reality underlying the demographic information required by the US federal government's \"meaningful use\" criteria for electronic medical records and a presentation by Dr. William Hogan at the Electronic Health Record of the Future conference in Buffalo, NY http://ontology.buffalo.edu/EHR/Demographics_Hogan_Buffalo_2010_09_22.ppt ontology: omrse/omrse-base property_value: http://purl.org/dc/elements/1.1/contributor "Daniel Welch" xsd:string @@ -11,7 +11,7 @@ property_value: http://purl.org/dc/elements/1.1/creator "William Hogan" xsd:stri property_value: http://purl.org/dc/elements/1.1/type IAO:8000001 property_value: http://purl.org/dc/terms/license https://creativecommons.org/licenses/by/4.0/ xsd:string property_value: owl:versionInfo "2020-10-27" xsd:string -property_value: owl:versionInfo "2021-03-05" xsd:string +property_value: owl:versionInfo "2021-03-22" xsd:string name: The Ontology of Medically Related Social Entities [Term] diff --git a/omrse-base.owl b/omrse-base.owl index 09797b6..cf95395 100644 --- a/omrse-base.owl +++ b/omrse-base.owl @@ -10,7 +10,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:terms="http://purl.org/dc/terms/"> - + Daniel Welch Amanda Hicks Mathias Brochhausen @@ -22,7 +22,7 @@ This ontology grew out of efforts to represent the reality underlying the demographic information required by the US federal government's "meaningful use" criteria for electronic medical records and a presentation by Dr. William Hogan at the Electronic Health Record of the Future conference in Buffalo, NY http://ontology.buffalo.edu/EHR/Demographics_Hogan_Buffalo_2010_09_22.ppt The Ontology of Medically Related Social Entities 2020-10-27 - 2021-03-05 + 2021-03-22 diff --git a/omrse-full.json b/omrse-full.json index fc7ac17..df93c41 100644 --- a/omrse-full.json +++ b/omrse-full.json @@ -5964,11 +5964,11 @@ }, { "pred": "http://www.w3.org/2002/07/owl#versionInfo", - "val": "2021-03-05" + "val": "2021-03-22" } ], "subsets": [], - "version": "http://purl.obolibrary.org/obo/omrse/releases/2021-03-05/omrse-full.json", + "version": "http://purl.obolibrary.org/obo/omrse/releases/2021-03-22/omrse-full.json", "xrefs": [] }, "nodes": [ diff --git a/omrse-full.obo b/omrse-full.obo index 43a4369..4ce520f 100644 --- a/omrse-full.obo +++ b/omrse-full.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: omrse/releases/2021-03-05/omrse-full.owl +data-version: omrse/releases/2021-03-22/omrse-full.owl subsetdef: attribute_slim "" subsetdef: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension "" subsetdef: http://purl.obolibrary.org/obo/valid_for_go_gp2term "" @@ -17,7 +17,7 @@ property_value: http://purl.org/dc/elements/1.1/creator "Swetha Garimalla" xsd:s property_value: http://purl.org/dc/elements/1.1/creator "William Hogan" xsd:string property_value: http://purl.org/dc/terms/license https://creativecommons.org/licenses/by/4.0/ xsd:string property_value: owl:versionInfo "2020-10-27" xsd:string -property_value: owl:versionInfo "2021-03-05" xsd:string +property_value: owl:versionInfo "2021-03-22" xsd:string name: The Ontology of Medically Related Social Entities [Term] diff --git a/omrse-full.owl b/omrse-full.owl index 409042f..bc35468 100644 --- a/omrse-full.owl +++ b/omrse-full.owl @@ -18,7 +18,7 @@ xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + Daniel Welch Amanda Hicks Mathias Brochhausen @@ -29,7 +29,7 @@ This ontology grew out of efforts to represent the reality underlying the demographic information required by the US federal government's "meaningful use" criteria for electronic medical records and a presentation by Dr. William Hogan at the Electronic Health Record of the Future conference in Buffalo, NY http://ontology.buffalo.edu/EHR/Demographics_Hogan_Buffalo_2010_09_22.ppt The Ontology of Medically Related Social Entities 2020-10-27 - 2021-03-05 + 2021-03-22 diff --git a/omrse.json b/omrse.json index 9552e66..d173634 100644 --- a/omrse.json +++ b/omrse.json @@ -5964,11 +5964,11 @@ }, { "pred": "http://www.w3.org/2002/07/owl#versionInfo", - "val": "2021-03-05" + "val": "2021-03-22" } ], "subsets": [], - "version": "http://purl.obolibrary.org/obo/omrse/releases/2021-03-05/omrse.json", + "version": "http://purl.obolibrary.org/obo/omrse/releases/2021-03-22/omrse.json", "xrefs": [] }, "nodes": [ diff --git a/omrse.obo b/omrse.obo index 43a4369..4ce520f 100644 --- a/omrse.obo +++ b/omrse.obo @@ -1,5 +1,5 @@ format-version: 1.2 -data-version: omrse/releases/2021-03-05/omrse-full.owl +data-version: omrse/releases/2021-03-22/omrse-full.owl subsetdef: attribute_slim "" subsetdef: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension "" subsetdef: http://purl.obolibrary.org/obo/valid_for_go_gp2term "" @@ -17,7 +17,7 @@ property_value: http://purl.org/dc/elements/1.1/creator "Swetha Garimalla" xsd:s property_value: http://purl.org/dc/elements/1.1/creator "William Hogan" xsd:string property_value: http://purl.org/dc/terms/license https://creativecommons.org/licenses/by/4.0/ xsd:string property_value: owl:versionInfo "2020-10-27" xsd:string -property_value: owl:versionInfo "2021-03-05" xsd:string +property_value: owl:versionInfo "2021-03-22" xsd:string name: The Ontology of Medically Related Social Entities [Term] diff --git a/omrse.owl b/omrse.owl index a82d045..2d5ecbe 100644 --- a/omrse.owl +++ b/omrse.owl @@ -18,7 +18,7 @@ xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + Daniel Welch Amanda Hicks Mathias Brochhausen @@ -29,7 +29,7 @@ This ontology grew out of efforts to represent the reality underlying the demographic information required by the US federal government's "meaningful use" criteria for electronic medical records and a presentation by Dr. William Hogan at the Electronic Health Record of the Future conference in Buffalo, NY http://ontology.buffalo.edu/EHR/Demographics_Hogan_Buffalo_2010_09_22.ppt The Ontology of Medically Related Social Entities 2020-10-27 - 2021-03-05 + 2021-03-22 diff --git a/omrse/catalog-v001.xml b/omrse/catalog-v001.xml new file mode 100644 index 0000000..d6337c7 --- /dev/null +++ b/omrse/catalog-v001.xml @@ -0,0 +1,10 @@ + + + + + + + + + + diff --git a/omrse/language/catalog-v001.xml b/omrse/language/catalog-v001.xml new file mode 100644 index 0000000..aa5bede --- /dev/null +++ b/omrse/language/catalog-v001.xml @@ -0,0 +1,7 @@ + + + + + + + From f7ec021d9ad29c76ee91cdf5e0f5242d3e07002f Mon Sep 17 00:00:00 2001 From: Nico Matentzoglu Date: Mon, 22 Mar 2021 21:33:15 +0000 Subject: [PATCH 2/2] Update release fork --- .github/workflows/qc.yml | 6 +++--- .gitignore | 2 ++ omrse/catalog-v001.xml | 10 ---------- omrse/language/catalog-v001.xml | 7 ------- 4 files changed, 5 insertions(+), 20 deletions(-) delete mode 100644 omrse/catalog-v001.xml delete mode 100644 omrse/language/catalog-v001.xml diff --git a/.github/workflows/qc.yml b/.github/workflows/qc.yml index b4e43cb..5253f17 100644 --- a/.github/workflows/qc.yml +++ b/.github/workflows/qc.yml @@ -6,9 +6,9 @@ name: CI on: # Triggers the workflow on push or pull request events but only for the main branch push: - branches: [ main ] + branches: [ master ] pull_request: - branches: [ main ] + branches: [ master ] # Allows you to run this workflow manually from the Actions tab workflow_dispatch: @@ -28,6 +28,6 @@ jobs: - name: Run ontology QC checks env: - DEFAULT_BRANCH: main + DEFAULT_BRANCH: master run: cd src/ontology && make ROBOT_ENV='ROBOT_JAVA_ARGS=-Xmx6G' test IMP=false PAT=false diff --git a/.gitignore b/.gitignore index bed78eb..0978b2a 100644 --- a/.gitignore +++ b/.gitignore @@ -43,3 +43,5 @@ src/_patterns src/_sparql .cogs pull-request.md +omrse/catalog-v001.xml +omrse/language/catalog-v001.xml diff --git a/omrse/catalog-v001.xml b/omrse/catalog-v001.xml deleted file mode 100644 index d6337c7..0000000 --- a/omrse/catalog-v001.xml +++ /dev/null @@ -1,10 +0,0 @@ - - - - - - - - - - diff --git a/omrse/language/catalog-v001.xml b/omrse/language/catalog-v001.xml deleted file mode 100644 index aa5bede..0000000 --- a/omrse/language/catalog-v001.xml +++ /dev/null @@ -1,7 +0,0 @@ - - - - - - -