allow strelka to run in local mode

Author: aryarm

callers/illumina-strelka

@@ -41,6 +41,6 @@ rm -rf "$output_dir"/results "$output_dir"/workspace "$output_dir"/workflow* "$o
 --runDir "$output_dir" --config "$config" --exome \
 --indelCandidates "$illumina_dir"/results/variants/candidateSV.vcf.gz
 
-"$output_dir"/runWorkflow.py -j 24 && \
+"$output_dir"/runWorkflow.py -m local && \
 bgzip -d "$output_dir"/results/variants/genome.S1.vcf.gz && \
 ln -sf results/variants/genome.S1.vcf "$output_dir/illumina-strelka.vcf"