Recombination filtering and default parameters

[nickp60]

Hi, I have a quick question about the analyses performed for the Harvest Suite paper: was recombination filtering (-x) used? Further, is there a reason that this is not enabled by default? From the paper, it sounds like the recombination filtering is part of the workflow, but I haven't been able to find any indication here or on the website as to which parameters were used for those analyses, or why that is not a default.

Thanks in advance, and thanks for a great tool!