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Is recombination filtering already done by default (Version 2.06)? #163

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Arthurdyu opened this issue Oct 15, 2024 · 2 comments
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@Arthurdyu
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Hi,gratitude for your work
In the new version, the option for filtering recombination is not seen (in the old version it was the -x option).
Is recombination filtering already done by default?

@bkille
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bkille commented Oct 15, 2024

The -x option still enables the recombination filter, but more recently the CLI help-text for -x was accidentally changed to say xtrafast. I'll revert that to make it more clear that -x enables the recombination filter.

@bkille
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bkille commented Oct 23, 2024

@Arthurdyu I looked into this a bit more, and it seems like the recombination filter only works if there is no partition (--no-partition).

Sorry for the confusion on my end. I'll get the recombination filtering working for the default workflow and make a new release in the next few days!

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