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ERROR: input list of k-mers and winnowmap parameter k are inconsistent #46

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zhyx6511 opened this issue Jul 18, 2024 · 5 comments
Open

ERROR: input list of k-mers and winnowmap parameter k are inconsistent #46

zhyx6511 opened this issue Jul 18, 2024 · 5 comments

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@zhyx6511
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Hi , I followed the guide strictly, but I get this error, I don't know what's causing it? Thank you!
@YuxuanRong
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您好，我也出现了同样的问题，请在软件使用时加上-k参数，指定您的k值即可解决该问题。

@zhyx6511
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您好，我也出现了同样的问题，请在软件使用时加上-k参数，指定您的k值即可解决该问题。

我加了-k 参数还是有同样的问题，管道samtools命令似乎也报错samtools sort: failed to read header from "-”，搞不明白了，最近用minimap2也是老是报错，"core dumped"，谢谢您！

@YuxuanRong
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YuxuanRong commented Jul 29, 2024 via email

@zhyx6511
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你好core的报错一般是内存溢出的问题 | | 戎宇轩 学生 | ---- Replied Message ---- | From | @.> | | Date | 07/29/2024 21:02 | | To | marbl/Winnowmap @.> | | Cc | YuxuanRong @.>, Comment @.> | | Subject | Re: [marbl/Winnowmap] ERROR: input list of k-mers and winnowmap parameter k are inconsistent (Issue #46) | 您好，我也出现了同样的问题，请在软件使用时加上-k参数，指定您的k值即可解决该问题。 我加了-k 参数还是有同样的问题，管道samtools命令似乎也报错samtools sort: failed to read header from "-”，搞不明白了，最近用minimap2也是老是报错，"core dumped"，谢谢您！ — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you commented.Message ID: @.***>
但是看了，内存还有很多的啊，谢谢您！

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@zhyx6511
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你好core的报错一般是内存溢出的问题 | | 戎宇轩 学生 | ---- Replied Message ---- | From | @.> | | Date | 07/29/2024 21:02 | | To | marbl/Winnowmap @.> | | Cc | YuxuanRong @.>, Comment @.> | | Subject | Re: [marbl/Winnowmap] ERROR: input list of k-mers and winnowmap parameter k are inconsistent (Issue #46) | 您好，我也出现了同样的问题，请在软件使用时加上-k参数，指定您的k值即可解决该问题。 我加了-k 参数还是有同样的问题，管道samtools命令似乎也报错samtools sort: failed to read header from "-”，搞不明白了，最近用minimap2也是老是报错，"core dumped"，谢谢您！ — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you commented.Message ID: @.***>
但是看了，内存还有很多的啊，谢谢您！

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@zhyx6511 @YuxuanRong