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Flagger-detected deletion of tetramer GAAA repeat around chr1_PATERNAL:164,490,100 #677

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nhansen opened this issue Mar 5, 2024 · 0 comments
Open
1 task done

Flagger-detected deletion of tetramer GAAA repeat around chr1_PATERNAL:164,490,100 #677

nhansen opened this issue Mar 5, 2024 · 0 comments
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small_error This error spans fewer than 50 bases in the assembly v1.0 This is an issue/error in the hg002v1.0 assembly

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nhansen commented Mar 5, 2024

Have you confirmed that this issue hasn't already been reported?

  • I have confirmed in the UCSC browser hub that this is a new issue (required)

Issue location in assembly

chr1_PATERNAL:164489772-164490156

Description of the issue

Missing GAAA repeat here (~52 bases, or 13 copies):
image
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@nhansen nhansen added v1.0 This is an issue/error in the hg002v1.0 assembly small_error This error spans fewer than 50 bases in the assembly labels Mar 5, 2024
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small_error This error spans fewer than 50 bases in the assembly v1.0 This is an issue/error in the hg002v1.0 assembly
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