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pyproject.toml
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pyproject.toml
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[build-system]
requires = ["flit_core >=3.2,<4"]
build-backend = "flit_core.buildapi"
[project]
name = "lamindb_setup"
requires-python = ">=3.9"
authors = [{name = "Lamin Labs", email = "[email protected]"}]
readme = "README.md"
dynamic = ["version", "description"]
dependencies = [
"lnschema_core>=0.51.0",
"lamin_utils>=0.3.3",
# External dependencies
"django>4.2,<5.3.0",
"dj_database_url>=1.3.0,<3.0.0",
"pydantic-settings",
"appdirs<2.0.0",
"requests",
"universal_pathlib==0.2.5", # is still experimental, need pinning
"botocore<2.0.0",
"gotrue>=2.1.0,<2.9.0", # lower - for options in auth.sign_out, upper - 2.9.0 fails
"supabase==2.2.1",
"psutil"
]
[project.urls]
Home = "https://github.com/laminlabs/lamindb-setup"
[project.optional-dependencies]
aws = [
"urllib3<2", # for botocore, TODO: check that really required
"aiobotocore[boto3]>=2.5.4,<3.0.0",
"s3fs>=2023.12.2,<=2024.6.1"
]
gcp = [
"gcsfs>=2023.12.2,<=2024.6.1"
]
erdiagram = [
"django-schema-graph",
]
dev = [
"line_profiler",
"pyjwt<3.0.0",
"psycopg2-binary",
"python-dotenv",
"nox",
"pytest>=6.0",
"pytest-cov",
"pytest-xdist",
"nbproject-test>=0.4.3",
"pandas",
]
[tool.ruff]
src = ["src"]
line-length = 88
select = [
"F", # Errors detected by Pyflakes
"E", # Error detected by Pycodestyle
"W", # Warning detected by Pycodestyle
"I", # isort
"D", # pydocstyle
"B", # flake8-bugbear
"TID", # flake8-tidy-imports
"C4", # flake8-comprehensions
"BLE", # flake8-blind-except
"UP", # pyupgrade
"RUF100", # Report unused noqa directives
"TCH", # Typing imports
"NPY", # Numpy specific rules
"PTH" # Use pathlib
]
ignore = [
# Do not catch blind exception: `Exception`
"BLE001",
# Errors from function calls in argument defaults. These are fine when the result is immutable.
"B008",
# line too long -> we accept long comment lines; black gets rid of long code lines
"E501",
# Do not assign a lambda expression, use a def -> lambda expression assignments are convenient
"E731",
# allow I, O, l as variable names -> I is the identity matrix
"E741",
# Missing docstring in public module
"D100",
# undocumented-public-class
"D101",
# Missing docstring in public method
"D102",
# Missing docstring in public function
"D103",
# Missing docstring in public package
"D104",
# __magic__ methods are are often self-explanatory, allow missing docstrings
"D105",
# Missing docstring in public nested class
"D106",
# Missing docstring in __init__
"D107",
## Disable one in each pair of mutually incompatible rules
# We don’t want a blank line before a class docstring
"D203",
# 1 blank line required after class docstring
"D204",
# first line should end with a period [Bug: doesn't work with single-line docstrings]
# We want docstrings to start immediately after the opening triple quote
"D213",
# Section underline is over-indented ("{name}")
"D215",
# First line should end with a period
"D400",
# First line should be in imperative mood; try rephrasing
"D401",
# First word of the first line should be capitalized: {} -> {}
"D403",
# First word of the docstring should not be "This"
"D404",
# Section name should end with a newline ("{name}")
"D406",
# Missing dashed underline after section ("{name}")
"D407",
# Section underline should be in the line following the section's name ("{name}")
"D408",
# Section underline should match the length of its name ("{name}")
"D409",
# No blank lines allowed between a section header and its content ("{name}")
"D412",
# Missing blank line after last section ("{name}")
"D413",
# Missing argument description
"D417",
# Imports unused
"F401",
# camcelcase imported as lowercase
"N813",
# module import not at top level of file
"E402",
# open()` should be replaced by `Path.open()
"PTH123",
]
[tool.ruff.pydocstyle]
convention = "google"
[tool.ruff.per-file-ignores]
"docs/*" = ["I"]
"tests/*" = ["D"]
"*/__init__.py" = ["F401"]