From f86cc5324750ae43849b8dc9a9fe815d25aba3bc Mon Sep 17 00:00:00 2001 From: zethson Date: Wed, 15 May 2024 15:14:21 +0200 Subject: [PATCH 1/3] :sparkles: Add uberon 2024-02-20 Signed-off-by: zethson --- bionty_base/sources.yaml | 3 +++ 1 file changed, 3 insertions(+) diff --git a/bionty_base/sources.yaml b/bionty_base/sources.yaml index c9762cd2..9b097b75 100644 --- a/bionty_base/sources.yaml +++ b/bionty_base/sources.yaml @@ -116,6 +116,9 @@ CellType: Tissue: uberon: all: + 2024-02-20: + url: http://purl.obolibrary.org/obo/uberon/releases/2024-02-20/uberon.owl + md5: 2048667b5fdf93192384bdf53cafba18 2023-09-05: url: http://purl.obolibrary.org/obo/uberon/releases/2023-09-05/uberon.owl md5: abcee3ede566d1311d758b853ccdf5aa From 27c087f01b02b8f8c60a545334ddfca035bd51d8 Mon Sep 17 00:00:00 2001 From: zethson Date: Thu, 16 May 2024 13:35:45 +0200 Subject: [PATCH 2/3] :sparkles: Add ensembl 111 and 112 Signed-off-by: zethson --- bionty_base/sources.yaml | 18 ++++++++++++++++++ 1 file changed, 18 insertions(+) diff --git a/bionty_base/sources.yaml b/bionty_base/sources.yaml index a46ab02d..6866e87b 100644 --- a/bionty_base/sources.yaml +++ b/bionty_base/sources.yaml @@ -45,6 +45,12 @@ Organism: Gene: ensembl: human: + release-112: + url: s3://bionty-assets/df_human__ensembl__release-112__Gene.parquet + md5: "" + release-111: + url: s3://bionty-assets/df_human__ensembl__release-111__Gene.parquet + md5: "" release-110: url: s3://bionty-assets/df_human__ensembl__release-110__Gene.parquet md5: 832f3947e83664588d419608a469b528 @@ -52,6 +58,12 @@ Gene: url: s3://bionty-assets/human_ensembl_release-109_Gene_lookup.parquet md5: 72da9968c74e96d136a489a6102a4546 mouse: + release-112: + url: s3://bionty-assets/df_mouse__ensembl__release-112__Gene.parquet + md5: "" + release-111: + url: s3://bionty-assets/df_mouse__ensembl__release-111__Gene.parquet + md5: "" release-110: url: s3://bionty-assets/df_mouse__ensembl__release-110__Gene.parquet md5: fa4ce130f2929aefd7ac3bc8eaf0c4de @@ -59,6 +71,12 @@ Gene: url: s3://bionty-assets/mouse_ensembl_release-109_Gene_lookup.parquet md5: 08a1165061151b270b985317322bd2ed saccharomyces cerevisiae: + release-112: + url: s3://bionty-assets/df_saccharomyces cerevisiae__ensembl__release-112__Gene.parquet + md5: "" + release-111: + url: s3://bionty-assets/df_saccharomyces cerevisiae__ensembl__release-111__Gene.parquet + md5: "" release-110: url: s3://bionty-assets/df_saccharomyces cerevisiae__ensembl__release-110__Gene.parquet md5: 2e59495a3e87ea6575e408697dd73459 From 1e6b2280a12b3a5285b0ab735c22489a0f3e74a9 Mon Sep 17 00:00:00 2001 From: zethson Date: Thu, 16 May 2024 13:39:35 +0200 Subject: [PATCH 3/3] :sparkles: Add md5 Signed-off-by: zethson --- bionty_base/sources.yaml | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/bionty_base/sources.yaml b/bionty_base/sources.yaml index 6866e87b..8a56561a 100644 --- a/bionty_base/sources.yaml +++ b/bionty_base/sources.yaml @@ -47,10 +47,10 @@ Gene: human: release-112: url: s3://bionty-assets/df_human__ensembl__release-112__Gene.parquet - md5: "" + md5: 4ccda4d88720a326737376c534e8446b release-111: url: s3://bionty-assets/df_human__ensembl__release-111__Gene.parquet - md5: "" + md5: f9183bc44abb34459984e137b5de8af1 release-110: url: s3://bionty-assets/df_human__ensembl__release-110__Gene.parquet md5: 832f3947e83664588d419608a469b528 @@ -60,10 +60,10 @@ Gene: mouse: release-112: url: s3://bionty-assets/df_mouse__ensembl__release-112__Gene.parquet - md5: "" + md5: 519cf7b8acc3c948274f66f3155a3210 release-111: url: s3://bionty-assets/df_mouse__ensembl__release-111__Gene.parquet - md5: "" + md5: 5c071655347458307ac92b208f3c903a release-110: url: s3://bionty-assets/df_mouse__ensembl__release-110__Gene.parquet md5: fa4ce130f2929aefd7ac3bc8eaf0c4de @@ -73,10 +73,10 @@ Gene: saccharomyces cerevisiae: release-112: url: s3://bionty-assets/df_saccharomyces cerevisiae__ensembl__release-112__Gene.parquet - md5: "" + md5: 11775126b101233525a0a9e2dd64edae release-111: url: s3://bionty-assets/df_saccharomyces cerevisiae__ensembl__release-111__Gene.parquet - md5: "" + md5: a15fab1d9d15a56d32fd2fd8a8fa250a release-110: url: s3://bionty-assets/df_saccharomyces cerevisiae__ensembl__release-110__Gene.parquet md5: 2e59495a3e87ea6575e408697dd73459