build.yml

name: build

on:
  push:
    branches: [main]
  pull_request:
    branches: [main, staging]
  workflow_dispatch:
env:
  BRANCH_NAME: ${{ github.head_ref || github.ref_name }}

jobs:
  test:
    runs-on: ubuntu-22.04
    env:
      GITHUB_EVENT_NAME: ${{ github.event_name }}
    strategy:
      fail-fast: false
      matrix:
        python-version: ["3.11"]
        group: ["bionty-unit", "bionty-docs"]
    timeout-minutes: 25

    steps:
      - name: Checkout main
        uses: actions/checkout@v4
        with:
          submodules: recursive
          fetch-depth: 0
      - name: Checkout lndocs
        uses: actions/checkout@v4
        with:
          repository: laminlabs/lndocs
          ssh-key: ${{ secrets.READ_LNDOCS }}
          path: lndocs
          ref: main
      - name: Setup Python
        uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python-version }}
      - name: Cache pre-commit
        uses: actions/cache@v3
        with:
          path: ~/.cache/pre-commit
          key: pre-commit-${{ runner.os }}-${{ hashFiles('.pre-commit-config.yaml') }}

      - name: Install Python dependencies
        run: |
          python -m pip install -U pip uv
          python -m uv pip install --system -U laminci
          python -m uv pip install --system rich
          python -m uv pip install --system ipywidgets

      - name: Configure AWS
        uses: aws-actions/configure-aws-credentials@v1
        with:
          aws-access-key-id: ${{ secrets.AWS_ACCESS_KEY_ID }}
          aws-secret-access-key: ${{ secrets.AWS_SECRET_ACCESS_KEY }}
          aws-region: eu-central-1
      - run: nox -s lint
        if: matrix.python-version == '3.11' && matrix.group == 'bionty-unit'
      - run: nox -s "build(group='${{ matrix.group }}')"
      - name: upload coverage
        uses: actions/upload-artifact@v2
        with:
          name: coverage--${{ matrix.group }}
          path: .coverage
      - uses: cloudflare/pages-action@v1
        if: ${{ matrix.python-version == '3.11' && matrix.group == 'bionty-docs' }}
        id: cloudflare
        with:
          apiToken: ${{ secrets.CLOUDFLARE_API_TOKEN }}
          accountId: 472bdad691b4483dea759eadb37110bd
          projectName: bionty-base
          directory: "_build/html"
          gitHubToken: ${{ secrets.GITHUB_TOKEN }}
          wranglerVersion: "3"

  coverage:
    needs: test
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4
      - uses: actions/setup-python@v5
        with:
          python-version: "3.11"
      - run: |
          python -m pip install -U pip uv
          uv pip install --system coverage[toml]
          uv pip install --system --no-deps .
      - uses: actions/download-artifact@v2
      - name: run coverage
        run: |
          coverage combine coverage--*/.coverage*
          coverage report --fail-under=0
          coverage xml
      - uses: codecov/codecov-action@v2
        with:
          token: ${{ secrets.CODECOV_TOKEN }}