my_session.py

# coding: utf-8
import csv
with open('test.csv', 'rb') as csvfile:
    filereader = csv.reader(csvfile, delimiter=',', quotechar='|')
    for row in filereader:
        print ','.join(row)
        
with open('test.csv', 'rb') as csvfile:
    filereader = csv.reader(csvfile, delimiter=',', quotechar=' ')
    for row in filereader:
        print ','.join(row)
        
with open('test.csv', 'rb') as csvfile:
    filereader = csv.reader(csvfile, delimiter=',')
    for row in filereader:
        print ','.join(row)
        
with open('test.csv', "rU') as csvfile:
    filereader = csv.reader(csvfile, delimiter=',')
    for row in filereader:
        print ','.join(row)
        
with open('test.csv', "rU") as csvfile:
    filereader = csv.reader(csvfile, delimiter=',')
    for row in filereader:
        print ','.join(row)
        
with open('test.csv', "rU") as csvfile:
    filereader = csv.reader(csvfile, delimiter=',')
    for row in filereader:
        print ','
        
with open('test.csv', "rU") as csvfile:
    filereader = csv.reader(csvfile, delimiter=',')
    for row in filereader:
        row
        
with open('test.csv', "rU") as csvfile:
    filereader = csv.reader(csvfile, delimiter=',')
    for row in filereader:
        join(row)
        
with open('test.csv', "rU") as csvfile:
    filereader = csv.reader(csvfile, delimiter=',')
    for row in filereader:
        print join(row)
        
with open('test.csv', "rU") as csvfile:
    filereader = csv.reader(csvfile, delimiter=',')
    for row in filereader:
        print row
        
with open('test.csv', "rU") as csvfile:
    filereader = csv.reader(csvfile, delimiter=',')
    for row in filereader:
        print row
        
get_ipython().magic(u'whos ')
with open('test.csv', "rU") as csvfile:
    filereader = csv.reader(csvfile, delimiter=',')
    for row in filereader:
        print row[1]
        
with open('test.csv', "rU") as csvfile:
    filereader = csv.reader(csvfile, delimiter=',')
    for row in filereader:
        print row[0]
        
with open('test.csv', "rU") as csvfile:
    filereader = csv.reader(csvfile, delimiter=',')
    for row in filereader:
        print row[0]
print row[1]
with open('test.csv', "rU") as csvfile:
    filereader = csv.reader(csvfile, delimiter=',')
    for row in filereader:
        print row[1] && row[2]
        
with open('test.csv', "rU") as csvfile:
    filereader = csv.reader(csvfile, delimiter=',')
    for row in filereader:
        print row[1] & row[2]
        
with open('test.csv', "rU") as csvfile:
    filereader = csv.reader(csvfile, delimiter=',')
    for row in filereader:
        if row[0] = "NC_006853":
            
with open('test.csv', "rU") as csvfile:
    filereader = csv.reader(csvfile, delimiter=',')
    for row in filereader:
        if row[0] = "NC_006853":
            print row
            
with open('test.csv', "rU") as csvfile:
    filereader = csv.reader(csvfile, delimiter=',')
    for row in filereader:
        if row[0] = 'NC_006853':
            print row
            
with open('test.csv', "rU") as csvfile:
    filereader = csv.reader(csvfile, delimiter=',')
    for row in filereader:
        if row[0] == 'NC_006853':
            print row
            
with open('test.csv', "rU") as csvfile:
    filereader = csv.reader(csvfile, delimiter=',')
    for row in filereader:
        print(type(row))
        
import csv 
import re
with open('test.csv', "rU") as csvfile:
        filereader = csv.reader(csvfile, delimiter=',')
        for row in filereader:
                if any("NC_" in s for s in rows):
                            print row 
            
import csv 
import re
with open('test.csv', "rU") as csvfile:
        filereader = csv.reader(csvfile, delimiter=',')
        for row in filereader:
                if any("NC_" in s for s in row):
                            print row 
            
with open('test.csv', "rU") as csvfile:
        filereader = csv.reader(csvfile, delimiter=',')
        for row in filereader:
                if any("NC_" in s for s in row):
                            print row[0]
            
import csv 
import re
with open('test.csv', "rU") as csvfile:
        filereader = csv.reader(csvfile, delimiter=',')
        for row in filereader:
                if any("NC_" in s for s in row):
                            header = row[0]
                    elif:
                            print row
                
with open('test.csv', "rU") as csvfile:
        filereader = csv.reader(csvfile, delimiter=',')
        for row in filereader:
                if any("NC_" in s for s in row):
                            header = row[0]
                    elif:
                           print row
                
get_ipython().magic(u'paste')
import csv 
import re
with open('test.csv', "rU") as csvfile:
        filereader = csv.reader(csvfile, delimiter=',')
        for row in filereader:
                if any("NC_" in s for s in row):
                            header = row[0]
                    elif:
                            print row
                
$cpaste import csv 
import re
with open('test.csv', "rU") as csvfile:
        filereader = csv.reader(csvfile, delimiter=',')
        for row in filereader:
                if any("NC_" in s for s in row):
                            header = row[0]
                    elif:
                            print row
                
get_ipython().magic(u'paste')
import csv 
import re
with open('test.csv', "rU") as csvfile:
        filereader = csv.reader(csvfile, delimiter=',')
        for row in filereader:
                if any("NC_" in s for s in row):
                            header = row[0]
                    elif
                        print row
            
with open('test.csv', "rU") as csvfile:
        filereader = csv.reader(csvfile, delimiter=',')
        for row in filereader:
                if any("NC_" in s for s in row):
                            header = row[0]
                    elif
                        print row
            
get_ipython().magic(u'paste')
import csv 
import re
with open('test.csv', "rU") as csvfile:
        filereader = csv.reader(csvfile, delimiter=',')
        for row in filereader:
                if any("NC_" in s for s in row):
                            header = row[0]
                    elif:
                            print row
                
get_ipython().magic(u'paste')
get_ipython().magic(u'paste')
import csv 
import re
with open('test.csv', "rU") as csvfile:
        filereader = csv.reader(csvfile, delimiter=',')
        for row in filereader:
                if any("NC_" in s for s in row):
                            header = row[0]
                    elif:
                            print(row)
                
with open('test.csv', "rU") as csvfile:
        filereader = csv.reader(csvfile, delimiter=',')
        for row in filereader:
                if any("NC_" in s for s in row):
                            header = row[0]
                    elif:
                            print (row)
                
get_ipython().magic(u'paste')
with open('test.csv', "rU") as csvfile:
        filereader = csv.reader(csvfile, delimiter=',')
        for row in filereader:
                if any("NC_" in s for s in row):
                            header = row[0]
                    else:
                            print (row)
                
get_ipython().magic(u'paste')
import csv 
import re
with open('test.csv', "rU") as csvfile:
        filereader = csv.reader(csvfile, delimiter=',')
        for row in filereader:
                if any("NC_" in s for s in row):
                            header = row[0]
                    else:
                            print (header)
                
get_ipython().magic(u'paste')
with open('test.csv', "rU") as csvfile:
        filereader = csv.reader(csvfile, delimiter=',')
        for row in filereader:
                if any("NC_" in s for s in row):
                            header = ">" + row[0]
                    else:
                            print (header)
                
get_ipython().magic(u'paste')
import csv 
import re
with open('test.csv', "rU") as csvfile:
        filereader = csv.reader(csvfile, delimiter=',')
        for row in filereader:
                if any("NC_" in s for s in row):
                            header = ">" + row[0]
                    else:
                            header = header + row[2] + row[3]
                            print (header)
                
get_ipython().magic(u'paste')
with open('test.csv', "rU") as csvfile:
        filereader = csv.reader(csvfile, delimiter=',')
        for row in filereader:
                if any("NC_" in s for s in row):
                            header = ">" + row[0]
                    else:
                            header = header + row[2]
                
get_ipython().magic(u'paste')
get_ipython().magic(u'paste')
with open('test.csv', "rU") as csvfile:
        filereader = csv.reader(csvfile, delimiter=',')
        for row in filereader:
                if any("NC_" in s for s in row):
                            header = ">" + row[0]
                    else:
                            header = header + row[2]
                
get_ipython().magic(u'paste')
with open('test.csv', "rU") as csvfile:
        filereader = csv.reader(csvfile, delimiter=',')
        for row in filereader:
                if any("NC_" in s for s in row):
                            header = ">" + row[0]
                    else:
                            header = header + row[2]
                            print (header)
                
get_ipython().magic(u'paste')
with open('test.csv', "rU") as csvfile:
        filereader = csv.reader(csvfile, delimiter=',')
        for row in filereader:
                if any("NC_" in s for s in row):
                            header = ">" + row[0]
                            rowcount = 1
                    elif(rowcount == 1):
                            header = header + row[2]
                            print (header)
                
get_ipython().magic(u'paste')
with open('test.csv', "rU") as csvfile:
        filereader = csv.reader(csvfile, delimiter=',')
        for row in filereader:
                if any("NC_" in s for s in row):
                            header = ">" + row[0]
                            rowcount = 1
                    elif(rowcount == 1):
                            header = header + row[2]
                            print (header)
                            print (row)
                
get_ipython().magic(u'paste')
with open('test.csv', "rU") as csvfile:
        filereader = csv.reader(csvfile, delimiter=',')
        for row in filereader:
                if any("NC_" in s for s in row):
                            header = ">" + row[0]
                            rowcount = 1
                    elif(rowcount == 1):
                            rowHeader = header + row[2]
                            print (rowHeader)
                            print (row)
                
get_ipython().magic(u'paste')
with open('test.csv', "rU") as csvfile:
        filereader = csv.reader(csvfile, delimiter=',')
        for row in filereader:
                if any("NC_" in s for s in row):
                            header = ">" + row[0]
                            rowcount = 1
                    elif(rowcount == 1):
                            rowHeader = header + "|" + row[2]
                            print (rowHeader)
                            print (row)
                
get_ipython().magic(u'pate')
get_ipython().magic(u'paste')
with open('test.csv', "rU") as csvfile:
        filereader = csv.reader(csvfile, delimiter=',')
        for row in filereader:
                if any("NC_" in s for s in row):
                            header = ">" + row[0]
                            rowcount = 1
                    elif(rowcount == 1):
                            rowHeader = header + "|" + row[1] + "|" + row[2]
                            print (rowHeader)
                
get_ipython().magic(u'paste')
get_ipython().magic(u'paste')
csvfile.name
import textwrapp
import textwrap
with open('test.csv', "rU") as csvfile:
        genome = csvfile.name
        filereader = csv.reader(csvfile, delimiter=',')
        for row in filereader:
                if any("NC_" in s for s in row):
                            header = ">" + row[0]
                            rowcount = 1
                    elif(rowcount == 1):
                            rowHeader = header + "|" + row[1] + "|" + row[2] + "|" + genome
                            print (rowHeader)
                            print join(textwrap.wrap(row[0], 80))
                
get_ipython().magic(u'paste')
import textwrap
with open('test.csv', "rU") as csvfile:
        genome = csvfile.name
        filereader = csv.reader(csvfile, delimiter=',')
        for row in filereader:
                if any("NC_" in s for s in row):
                            header = ">" + row[0]
                            rowcount = 1
                    elif(rowcount == 1):
                            rowHeader = header + "|" + row[1] + "|" + row[2] + "|" + genome
                            print (rowHeader)
                            print "".join(textwrap.wrap(row[0], 80))
                
get_ipython().magic(u'paste')
get_ipython().magic(u'paste')
get_ipython().magic(u'paste')
with open('test.csv', "rU") as csvfile:
        genome = csvfile.name
        filereader = csv.reader(csvfile, delimiter=',')
        for row in filereader:
                if any("NC_" in s for s in row):
                            header = ">" + row[0]
                            rowcount = 1
                    elif(rowcount == 1):
                            rowHeader = header + "|" + row[1] + "|" + row[2] + "|" + genome
                            print (rowHeader)
                            print "".join(textwrap.wrap(row[0], 80))
                
get_ipython().magic(u'paste')
s="WE THE PEOPLE OF THE UNITED STATES, IN ORDER TO FORM A MORE PERFECT UNION, ESTABLISH JUSTICE, INSURE DOMESTIC TRANQUILITY, PROVIDE FOR THE COMMON DEFENSE, PROMOTE THE GENERAL WELFARE, AND SECURE THE BLESSINGS OF LIBERTY TO OURSELVES AND OUR POSTERITY, DO ORDAIN AND ESTABLISH THIS CONSTITUTION FOR THE UNITED STATES OF AMERICA."
import textwrap
print "\n".join(textwrap.wrap(s, 80))
with open('test.csv', "rU") as csvfile:
        genome = csvfile.name
        filereader = csv.reader(csvfile, delimiter=',')
        for row in filereader:
                if any("NC_" in s for s in row):
                            header = ">" + row[0]
                            rowcount = 1
                    elif(rowcount == 1):
                            rowHeader = header + "|" + row[1] + "|" + row[2] + "|" + genome
                            print (rowHeader)
                            print "\n".join(textwrap.wrap(row[0], 80))
                
get_ipython().magic(u'paste')
csvfile.name
csvfile.name.split(".")
csvfile.name.split(".")[1]
csvfile.name.split(".")[0]
with open('test.csv', "rU") as csvfile:
        fastaname = csvfile.name.split(".")[0]
        fastaoutput = open(fastaname + ".fasta", 'r+')
        filereader = csv.reader(csvfile, delimiter=',')
        for row in filereader:
                if any("NC_" in s for s in row):
                            header = ">" + row[0]
                            rowcount = 1
                    elif(rowcount == 1):
                            rowHeader = header + "|" + row[1] + "|" + row[2] + "|" + fastaname
                            fastaoutput.write(rowHeader)
                            fastaoutput.write("\n".join(textwrap.wrap(row[0], 80)))
                    f.close()
                csvfile.close()
                
get_ipython().magic(u'paste')
with open('test.csv', "rU") as csvfile:
        fastaname = csvfile.name.split(".")[0]
        fastaoutput = open(fastaname + ".fasta", 'w')
        filereader = csv.reader(csvfile, delimiter=',')
        for row in filereader:
                if any("NC_" in s for s in row):
                            header = ">" + row[0]
                            rowcount = 1
                    elif(rowcount == 1):
                            rowHeader = header + "|" + row[1] + "|" + row[2] + "|" + fastaname
                            fastaoutput.write(rowHeader)
                            fastaoutput.write("\n".join(textwrap.wrap(row[0], 80)))
                    f.close()
                csvfile.close()
                
get_ipython().magic(u'paste')
with open('test.csv', "rU") as csvfile:
        fastaname = csvfile.name.split(".")[0]
        fastaoutput = open(fastaname + ".fasta", 'w')
        filereader = csv.reader(csvfile, delimiter=',')
        for row in filereader:
                if any("NC_" in s for s in row):
                            header = ">" + row[0]
                            rowcount = 1
                    elif(rowcount ==1):
                            if any("Length" in s for s in row):
                                    name = row[0].strip()
                            elif(rowcount == 2):
                                    rowHeader = header + "|" + row[1] + "|" + row[2] + "|" + name
                                    fastaoutput.write(rowHeader)
                                    fastaoutput.write("\n".join(textwrap.wrap(row[0], 80)))
                            fastaoutput.close()
                        csvfile.close()
                        
get_ipython().magic(u'paste')
with open('test.csv', "rU") as csvfile:
        fastaname = csvfile.name.split(".")[0]
        fastaoutput = open(fastaname + ".fasta", 'w')
        filereader = csv.reader(csvfile, delimiter=',')
        for row in filereader:
                if any("NC_" in s for s in row):
                            header = ">" + row[0]
                            rowcount = 1
                    elif(rowcount ==1):
                            if any("Length" in s for s in row):
                                    name = row[0].strip()
                            elif(rowcount == 2):
                                    rowHeader = header + "|" + row[1] + "|" + row[2] + "|" + name
                                    fastaoutput.write(rowHeader)
                                    fastaoutput.write("\n".join(textwrap.wrap(row[0], 80)))
                            filereader.close()
                            fastaoutput.close()
                        csvfile.close()
                        
get_ipython().magic(u'paste')
with open('test.csv', "rU") as csvfile:
        fastaname = csvfile.name.split(".")[0]
        fastaoutput = open(fastaname + ".fasta", 'w')
        filereader = csv.reader(csvfile, delimiter=',')
        for row in filereader:
                if any("NC_" in s for s in row):
                            header = ">" + row[0]
                            rowcount = 1
                    elif(rowcount ==1):
                            if any("Length" in s for s in row):
                                    name = row[0].strip()
                            elif(rowcount == 2):
                                    rowHeader = header + "|" + row[1] + "|" + row[2] + "|" + name
                                    string += rowHeader
                                    strin += "\n".join(textwrap.wrap(row[0], 80))
                             fastaoutput.write(string)
                            fastaoutput.close()
                        csvfile.close()
                        
get_ipython().magic(u'paste')
get_ipython().magic(u'paste with open(\'test.csv\', "rU") as csvfile:')
    fastaname = csvfile.name.split(".")[0]
    fastaoutput = open(fastaname + ".fasta", 'w')
    filereader = csv.reader(csvfile, delimiter=',')
    for row in filereader:
            if any("NC_" in s for s in row):
                        header = ">" + row[0]
                        rowcount = 1
                elif(rowcount ==1):
                        if any("Length" in s for s in row):
                                name = row[0].strip()
                        elif(rowcount == 2):
                                rowHeader = header + "|" + row[1] + "|" + row[2] + "|" + name
                                string += rowHeader
                                string += "\n".join(textwrap.wrap(row[0], 80))
                         fastaoutput.write(string)
                        fastaoutput.close()
                    csvfile.close()
                    
get_ipython().magic(u'paste')
get_ipython().magic(u'paste with open(\'test.csv\', "rU") as csvfile:')
    fastaname = csvfile.name.split(".")[0]
    fastaoutput = open(fastaname + ".fasta", 'w')
    filereader = csv.reader(csvfile, delimiter=',')
    for row in filereader:
            if any("NC_" in s for s in row):
                        header = ">" + row[0]
                        rowcount = 1
                elif(rowcount ==1):
                        if any("Length" in s for s in row):
                                name = row[0].strip()
                        elif(rowcount == 2):
                                rowHeader = header + "|" + row[1] + "|" + row[2] + "|" + name
                                outputstring += rowHeader
                                outputstring += "\n".join(textwrap.wrap(row[0], 80))
                         fastaoutput.write(outputstring)
                        fastaoutput.close()
                    csvfile.close()
                    
get_ipython().magic(u'paste')
with open('test.csv', "rU") as csvfile:
        fastaname = csvfile.name.split(".")[0]
        fastaoutput = open(fastaname + ".fasta", 'w')
        filereader = csv.reader(csvfile, delimiter=',')
        for row in filereader:
                if any("NC_" in s for s in row):
                            header = ">" + row[0]
                            rowcount = 1
                    elif(rowcount ==1):
                            if any("Length" in s for s in row):
                                    name = row[0].strip()
                            elif(rowcount == 2):
                                    rowHeader = header + "|" + row[1] + "|" + row[2] + "|" + name
                                    outputstring += rowHeader
                                    outputstring += "\n".join(textwrap.wrap(row[0], 80))
                             fastaoutput.write(outputstring)
                            fastaoutput.close()
                        csvfile.close()
                        
get_ipython().magic(u'paste')
get_ipython().magic(u'save ')
get_ipython().magic(u'save ()')
get_ipython().magic(u'save')
get_ipython().magic(u'save my_session 1-137')