The Greater Plains Collaborative (GPC) and the Accessible Research Commons for Health (ARCH) are PCORI CDRNs that i2b2 as a core technology. The i2b2 PCORnet Common Data Model Ontology is a representation of the PCORnet Common Data Model (CDM) which allows not only i2b2 style ad-hoc query of clinical data but also this i2p-transform of data from an i2b2 datamart into a PCORNet CDM datamart.
Copyright (c) 2014-2017 Univeristy of Kansas Medical Center License: MIT
Portions copyright The Brigham and Women’s Hospital, Inc. License: i2b2 Software License
To build flowsheet transformation views,
once installation and configuration (below) is done, invoke the
FlowsheetViews task following luigi conventions:
luigi --module i2p_tasks MedAdmin
In more detail:
PYTHONPATH=. LUIGI_CONFIG_PATH=my-client.cfg luigi \
--local-scheduler \
--module i2p_tasks MedAdmin
Troubleshooting is discussed in CONTRIBUTING.
See requirements.txt.
@@TODO elaborate on this once we establish production conventions.
docker run --name luigid -p8082:8082 -v/STATE:/luigi/state -v/CONFIG:/etc/luigi -t stockport/luigid
See client.cfg.
For design info and project coding style, see CONTRIBUTING.
- Waitman, L.R., Aaronson, L.S., Nadkarni, P.M., Connolly, D.W. & Campbell, J.R. The Greater Plains Collaborative: a PCORnet Clinical Research Data Network. J Am Med Inform Assoc 21, 637-641 (2014).