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[DRAFT] dont merge this just for comparison #1

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ca6c85d
fource_config, visti, demographics, race, ethencity, covidpos, covidn…
lav-patel Oct 17, 2021
7deca3f
labs done except optional labs and original lab names
lav-patel Oct 17, 2021
a6b919c
eval_start_date to start_date
lav-patel Oct 17, 2021
666c78d
changed the data formate
lav-patel Oct 17, 2021
1a52208
some progress
lav-patel Nov 1, 2021
89f1c74
stop running further if one lab has more than 1 unit.
lav-patel Nov 6, 2021
56bf2d0
working labs
lav-patel Nov 6, 2021
2d60507
medications mapping seems done
lav-patel Nov 6, 2021
f01219d
procedure working fork umc
lav-patel Nov 7, 2021
b407436
fource_admissions and fource_icu is done
lav-patel Nov 7, 2021
5923aa9
fource_death and fource_first_covid_tests is done
lav-patel Nov 7, 2021
bd4b357
converted date to oracle formate and completed fource_cohort_patients
lav-patel Nov 7, 2021
7236989
vairables for script, append for speedup, renaming fource_LocalPatien…
lav-patel Nov 8, 2021
dd58373
/*+ APPEND */ into fource_LocalPatientSummary
lav-patel Nov 8, 2021
8117653
create makefile
lav-patel Nov 8, 2021
1226f57
added gitignore and typo in make file
lav-patel Nov 8, 2021
e57ad09
makefile can run 4cex2 script
lav-patel Nov 8, 2021
4b319db
SET TERMOUT ON;
lav-patel Nov 8, 2021
e8d43bc
sqlplus echo what is running
lav-patel Nov 8, 2021
e6a430e
sqlplus dont like ; in comment
lav-patel Nov 8, 2021
334b026
sqlplus dont line no space between comment and ;
lav-patel Nov 8, 2021
1558bb3
ORA-00933: SQL command not properly ended
lav-patel Nov 8, 2021
3c5be8b
typo of ;
lav-patel Nov 8, 2021
cf274a1
insert append creates issues with next merge into
lav-patel Nov 9, 2021
8add7d2
sqlplus dont like comment formate
lav-patel Nov 9, 2021
55df0c2
shorten fource_LocalPatientObs from fource_LocalPatientObservations
lav-patel Nov 9, 2021
76b26ca
drop table fource_LocalPatientObs
lav-patel Nov 9, 2021
ad13a44
drop tables
lav-patel Nov 9, 2021
bc28aeb
sqlplus dont like comment
lav-patel Nov 9, 2021
78c9ad8
fource_LocalPatientClinicalC noncompress to allow drop col
lav-patel Nov 9, 2021
b8d2697
coomented out output and drop tables
lav-patel Nov 9, 2021
41c3e1d
working without any error entire script
lav-patel Nov 9, 2021
aacecc2
sqlplus dont like comment formate
lav-patel Nov 10, 2021
e13b3db
ORA-14133: ALTER TABLE MOVE cannot be combined with other operations
lav-patel Nov 10, 2021
232f061
nocompress when creating table
lav-patel Nov 10, 2021
f708f36
makefile for exporting data
lav-patel Nov 10, 2021
071f181
only header exported to CSV
lav-patel Nov 10, 2021
54144a5
dont vc export folder
lav-patel Nov 10, 2021
77511b1
changed the export folder name
lav-patel Nov 10, 2021
66ff1ee
typo
lav-patel Nov 10, 2021
03d8006
makefile oops
lav-patel Nov 10, 2021
78abb6b
sqlplus dont like comment without space
lav-patel Nov 11, 2021
f606e37
Merge branch 'run_at_ku' of github.com:kumc-bmi/PhaseX.2SqlDataExtrac…
lav-patel Nov 11, 2021
76e7005
created error log files
lav-patel Nov 11, 2021
1ab4cdb
testing makefile for error log
lav-patel Nov 11, 2021
368eaf9
getting rid of un-needed error word from console
lav-patel Nov 11, 2021
0c6d274
getting rid of unneeded output
lav-patel Nov 11, 2021
0c4284c
getting rid of un-needed words from console
lav-patel Nov 11, 2021
76c5538
jenkins .sh script dont like ""
lav-patel Nov 11, 2021
80b0857
jenkins .sh script dont like ""
lav-patel Nov 11, 2021
7a0fc10
not error out if there it cant find error related words
lav-patel Nov 11, 2021
d33376e
run entire etl
lav-patel Nov 11, 2021
d7ea7df
sqlplus dont like formate of comment and sql (SP2-0734, SP2-0042, SP…
lav-patel Nov 11, 2021
104f591
SP2-0734, SP2-0042
lav-patel Nov 11, 2021
aad63e2
SP2-0734
lav-patel Nov 11, 2021
e197479
corected tablename for oracle
lav-patel Nov 12, 2021
d9cae8d
to get clear oracle exported tables
lav-patel Nov 12, 2021
b48b592
count table rows
lav-patel Nov 14, 2021
776f499
added race from patient dim and now all the tables have recrods
lav-patel Nov 14, 2021
54b1cff
sqlplus dont like blankspace in union all
lav-patel Nov 14, 2021
6d0b81c
speed up temp_fource_admissions
lav-patel Nov 19, 2021
cf161ec
typo
lav-patel Nov 20, 2021
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5 changes: 5 additions & 0 deletions .gitignore
Original file line number Diff line number Diff line change
@@ -0,0 +1,5 @@
*.csv
*.log
.make*
export_PhaseX.2
export
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