Intarsis_00_run_all

#!/bin/bash
# This program runs all steps of Intarsis workflow from
# file preparation to the SBAS procedure.
# It logs all the messaging into intarsis.runall.log file.
# It requires  file intarsis.config properly configured.

if [ ! -f intarsis.config ]; then
	echo "Configuration file intarsis.config not found"
	echo "Please read the documentation and create it."
	exit
fi

if [ ! -f SAFE_filelist ]; then
        echo "SLC list file SAFE_fileslist not found"
        echo "Please read the documentation and	create it."
	exit
fi

if [ ! -f pins.ll ]; then
        echo "Configuration file pins.ll not found"
        echo "Please read the documentation and	create it."
	exit
fi

if [ ! -f batch_tops.config ]; then
        echo "Configuration file batch_tops.config not found"
        echo "Please read the documentation and	create it."
	exit
fi

##################
# Run the steps: #
##################
echo "Starting Intarsis Workflow" &> intarsis.runall.log
echo "#########################" &>> intarsis.runall.log
echo "Step 01: File preparation" &>> intarsis.runall.log
echo "#########################" &>> intarsis.runall.log
Intarsis_01_file_preparation &>> intarsis.runall.log
echo "#########################" &>> intarsis.runall.log
echo "Step 02: Corregistration"  &>> intarsis.runall.log
echo "#########################" &>> intarsis.runall.log
Intarsis_02_allign &>> intarsis.runall.log 
echo "#########################" &>> intarsis.runall.log
echo "Step 03: Interferograms"   &>> intarsis.runall.log
echo "#########################" &>> intarsis.runall.log
Intarsis_03_interferograms &>> intarsis.runall.log
echo "#########################" &>> intarsis.runall.log
echo "Step 04a: Merging"         &>> intarsis.runall.log
echo "#########################" &>> intarsis.runall.log
Intarsis_04a_merge               &>> intarsis.runall.log
echo "#########################" &>> intarsis.runall.log
echo "Step 04b: Masking"         &>> intarsis.runall.log
echo "#########################" &>> intarsis.runall.log
Intarsis_04b_mask &>> intarsis.runall.log
echo "#########################" &>> intarsis.runall.log
echo "Step 05: Unwrapping"       &>> intarsis.runall.log
echo "#########################" &>> intarsis.runall.log
Intarsis_05_unwrap &>> intarsis.runall.log
echo "#########################" &>> intarsis.runall.log
echo "Step 06: SBAS"             &>> intarsis.runall.log
echo "#########################" &>> intarsis.runall.log
Intarsis_06_sbas &>> intarsis.runall.log