pyproject.toml

# Package ######################################################################

[build-system]
requires = ["setuptools >= 61.0.0"]
build-backend = "setuptools.build_meta"

[project]
name = "chromax"
description = "Breeding simulator based on JAX"
readme = "README.md"
requires-python = ">= 3.9"
authors = [{ name = "Omar G. Younis", email = "omar.younis98@gmail.com" }]
license = { text = "BSD-3-Clause" }
keywords = ["Breeding", "simulator", "JAX", "chromosome", "genetics", "bioinformatics",]
classifiers = [
    "Development Status :: 4 - Beta",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    'Intended Audience :: Science/Research',
]
dependencies = ["numpy", "pandas", "jax>=0.4.16", "jaxlib>=0.4.16", "jaxtyping"]
dynamic = ["version"]

[project.optional-dependencies]
testing = ["pytest"]
docs = ["sphinx-rtd-theme"]

[project.urls]
Repository = "https://github.com/kora-labs/chromax"
Documentation = "https://chromax.readthedocs.io/"
"Bug Report" = "https://github.com/kora-labs/chromax/issues"

[tool.setuptools]
include-package-data = true


# Linters and Test tools #######################################################

[tool.black]
safe = true

[tool.isort]
atomic = true
profile = "black"
src_paths = ["chromax", "tests"]
extra_standard_library = ["typing_extensions"]
indent = 4
lines_after_imports = 2
multi_line_output = 3