Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

added Neuronexus A1x16 probe #20

Open
wants to merge 2 commits into
base: master
Choose a base branch
from
Open

added Neuronexus A1x16 probe #20

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
11336c0
added Neuronexus A1x16 probe
neuromusic Mar 5, 2015
eb8db81
added Poly3-6mm-50
neuromusic Mar 12, 2015
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
212 changes: 212 additions & 0 deletions data/probefiles/A1x32-Poly3-6mm-50.prb
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,212 @@
# neuronexus sites correspond to the following channels (array indices)
#

# (3) (30)
# | \ / |
# (2)-(17)-(31)
# | / \ |
# (1)-(16)-(32)
# | \ / |
# (4)-(18)-(29)
# | / \ |
# (5)-(15)-(28)
# | \ / |
# (6)-(19)-(27)
# | / \ |
# (7)-(14)-(26)
# | \ / |
# (8)-(20)-(25)
# | / \ |
# (9)-(13)-(24)
# | \ / |
# (10)-(21)-(23)
# | / \ |
# (11)-(12)-(22)

# site:channel
# s = {1: 0,
# 2: 1,
# 3: 2,
# 4: 3,
# 5: 4,
# 6: 5,
# 7: 6,
# 8: 7,
# 9: 8,
# 10: 9,
# 11: 10,
# 12: 11,
# 13: 12,
# 14: 13,
# 15: 14,
# 16: 15,
# 17: 16,
# 18: 17,
# 19: 18,
# 20: 19,
# 21: 20,
# 22: 21,
# 23: 22,
# 24: 23,
# 25: 24,
# 26: 25,
# 27: 26,
# 28: 27,
# 29: 28,
# 30: 29,
# 31: 30,
# 32: 31,
# }
s = {11: 0,
12: 1,
22: 2,
10: 3,
21: 4,
23: 5,
9: 6,
13: 7,
24: 8,
8: 9,
20: 10,
25: 11,
7: 12,
14: 13,
26: 14,
6: 15,
19: 16,
27: 17,
5: 18,
15: 19,
28: 20,
4: 21,
18: 22,
29: 23,
1: 24,
16: 25,
32: 26,
2: 27,
17: 28,
31: 29,
3: 30,
30: 31,
}

channel_groups = {
# Shank index.
0:
{
# List of channels to keep for spike detection.
'channels': s.values(),

# Adjacency graph. Dead channels will be automatically discarded
# by considering the corresponding subgraph.
'graph': [
(s[3],s[2]), # column 0
(s[2],s[1]),
(s[1],s[4]),
(s[4],s[5]),
(s[5],s[6]),
(s[6],s[7]),
(s[7],s[8]),
(s[8],s[9]),
(s[9],s[10]),
(s[10],s[11]),
(s[17],s[16]), # column 1
(s[16],s[18]),
(s[18],s[15]),
(s[15],s[19]),
(s[19],s[14]),
(s[14],s[20]),
(s[20],s[13]),
(s[13],s[21]),
(s[21],s[12]),
(s[30],s[31]), # column 2
(s[31],s[32]),
(s[32],s[29]),
(s[29],s[28]),
(s[28],s[27]),
(s[27],s[26]),
(s[26],s[25]),
(s[25],s[24]),
(s[24],s[23]),
(s[23],s[22]),
(s[2],s[17]), # row 0
(s[17],s[31]),
(s[1],s[16]), # row 1
(s[16],s[32]),
(s[4],s[18]), # row 2
(s[18],s[29]),
(s[5],s[15]), # row 3
(s[15],s[28]),
(s[6],s[19]), # row 4
(s[19],s[27]),
(s[7],s[14]), # row 5
(s[14],s[26]),
(s[8],s[20]), # row 6
(s[20],s[25]),
(s[9],s[13]), # row 7
(s[13],s[24]),
(s[10],s[21]), # row 8
(s[21],s[23]),
(s[11],s[12]), # row 9
(s[12],s[22]),
(s[17],s[3]), # star 0
(s[17],s[30]),
(s[17],s[32]),
(s[17],s[1]),
(s[18],s[1]), # star 1
(s[18],s[32]),
(s[18],s[28]),
(s[18],s[5]),
(s[19],s[5]), # star 2
(s[19],s[28]),
(s[19],s[26]),
(s[19],s[7]),
(s[20],s[7]), # star 3
(s[20],s[26]),
(s[20],s[24]),
(s[20],s[9]),
(s[21],s[9]), # star 4
(s[21],s[24]),
(s[21],s[22]),
(s[21],s[11]),
],

# 2D positions of the channels, only for visualization purposes
# in KlustaViewa. The unit doesn't matter.
'geometry': {
s[3]: (0,500), # column 0
s[2]: (0,450),
s[1]: (0,400),
s[4]: (0,350),
s[5]: (0,300),
s[6]: (0,250),
s[7]: (0,200),
s[8]: (0,150),
s[9]: (0,100),
s[10]: (0,50),
s[11]: (0,0),
s[17]: (50,450), # column 1
s[16]: (50,400),
s[18]: (50,350),
s[15]: (50,300),
s[19]: (50,250),
s[14]: (50,200),
s[20]: (50,150),
s[13]: (50,100),
s[21]: (50,50),
s[12]: (50,0),
s[30]: (100,500), # column 2
s[31]: (100,450),
s[32]: (100,400),
s[29]: (100,350),
s[28]: (100,300),
s[27]: (100,250),
s[26]: (100,200),
s[25]: (100,150),
s[23]: (100,100),
s[23]: (100,50),
s[22]: (100,0),
}
}
}
91 changes: 91 additions & 0 deletions data/probefiles/Neuronexus_A1x16.prb
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,91 @@
# Neuronexus A1x16-5mm50 probe

# neuronexus sites correspond to the following channels (array indices)

# site:channel
# s = {1: 0,
# 2: 1,
# 3: 2,
# 4: 3,
# 5: 4,
# 6: 5,
# 7: 6,
# 8: 7,
# 9: 8,
# 10: 9,
# 11: 10,
# 12: 11,
# 13: 12,
# 14: 13,
# 15: 14,
# 16: 15,
# }
s = {1: 4,
2: 6,
3: 2,
4: 10,
5: 8,
6: 0,
7: 12,
8: 14,
9: 15,
10: 13,
11: 1,
12: 9,
13: 11,
14: 3,
15: 7,
16: 5,
}


channel_groups = {
# Shank index.
0:
{
# List of channels to keep for spike detection.
'channels': s.values(),

# Adjacency graph. Dead channels will be automatically discarded
# by considering the corresponding subgraph.
'graph': [
(s[6], s[11]),
(s[11], s[3]),
(s[3], s[14]),
(s[14], s[10]),
(s[10], s[8]),
(s[8], s[2]),
(s[2], s[15]),
(s[15], s[5]),
(s[5], s[12]),
(s[12], s[4]),
(s[4], s[13]),
(s[13], s[7]),
(s[7], s[10]),
(s[10], s[8]),
(s[8], s[9]),
],

# 2D positions of the channels, in microns.
# NOTE: For visualization purposes
# in KlustaViewa, the unit doesn't matter.
'geometry': {
s[6]: (0, 0),
s[11]: (0, 50),
s[3]: (0, 100),
s[14]: (0, 150),
s[1]: (0, 200),
s[16]: (0, 250),
s[2]: (0, 300),
s[15]: (0, 350),
s[5]: (0, 400),
s[12]: (0, 450),
s[4]: (0, 500),
s[13]: (0, 550),
s[7]: (0, 600),
s[10]: (0, 650),
s[8]: (0, 700),
s[9]: (0, 750),
}
}
}