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Renumbering Clusters after Sorting #66

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seacritasianman opened this issue Jan 5, 2017 · 4 comments
Open

Renumbering Clusters after Sorting #66

seacritasianman opened this issue Jan 5, 2017 · 4 comments

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@seacritasianman
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Hello,

I was wondering if there's a way to renumber all the clusters after sorting, either manually, or automatically (starting with 0 being the noise clusters to N-1 clusters). Thanks
@rossant
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rossant commented Jan 6, 2017

It's not possible at the moment, unfortunately.

@seacritasianman
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Do you know if there's any easy way to find the cluster ID of the noise and MUA clusters after using Klustaviewa, esp via MATLAB? Thanks.

@rossant
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rossant commented Jan 7, 2017

Yes, open the kwik file in MATLAB and check out the path /channel_groups/0/clusters/main/47/ (for cluster 47 of shank 0), the attribute name is cluster_group, the value is 0 or 1 for noise or MUA. See https://www.mathworks.com/help/matlab/ref/h5readatt.html?s_tid=gn_loc_drop

@seacritasianman
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Perfect. Thank you for your help.

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@rossant @seacritasianman