From e202e9e7cf8425b9d9aac7034d9a6f96b9f70769 Mon Sep 17 00:00:00 2001 From: Haimasree Date: Sat, 18 Jun 2022 17:09:49 +0200 Subject: [PATCH 01/19] Updating model-to-singularity.json --- shared/containers/model-to-singularity.json | 16 ++++++++-------- 1 file changed, 8 insertions(+), 8 deletions(-) diff --git a/shared/containers/model-to-singularity.json b/shared/containers/model-to-singularity.json index 7be898420..6185728b4 100644 --- a/shared/containers/model-to-singularity.json +++ b/shared/containers/model-to-singularity.json @@ -95,24 +95,24 @@ "md5": "51f7d11a9a45af47397e979614220473" }, "MMSplice/pathogenicity": { - "url": "https://zenodo.org/record/6603220/files/kipoi-docker_mmsplice-slim.sif?download=1", + "url": "https://zenodo.org/record/6659897/files/kipoi-docker_mmsplice-slim.sif?download=1", "name": "kipoi-docker_mmsplice-slim", - "md5": "1f2ee90e10c762cf20dd2f768a4aac97" + "md5": "48b3c342cb2023bd5cdecfcc2a404add" }, "MMSplice/splicingEfficiency": { - "url": "https://zenodo.org/record/6603220/files/kipoi-docker_mmsplice-slim.sif?download=1", + "url": "https://zenodo.org/record/6659897/files/kipoi-docker_mmsplice-slim.sif?download=1", "name": "kipoi-docker_mmsplice-slim", - "md5": "1f2ee90e10c762cf20dd2f768a4aac97" + "md5": "48b3c342cb2023bd5cdecfcc2a404add" }, "MMSplice/deltaLogitPSI": { - "url": "https://zenodo.org/record/6603220/files/kipoi-docker_mmsplice-slim.sif?download=1", + "url": "https://zenodo.org/record/6659897/files/kipoi-docker_mmsplice-slim.sif?download=1", "name": "kipoi-docker_mmsplice-slim", - "md5": "1f2ee90e10c762cf20dd2f768a4aac97" + "md5": "48b3c342cb2023bd5cdecfcc2a404add" }, "MMSplice/modularPredictions": { - "url": "https://zenodo.org/record/6603220/files/kipoi-docker_mmsplice-slim.sif?download=1", + "url": "https://zenodo.org/record/6659897/files/kipoi-docker_mmsplice-slim.sif?download=1", "name": "kipoi-docker_mmsplice-slim", - "md5": "1f2ee90e10c762cf20dd2f768a4aac97" + "md5": "48b3c342cb2023bd5cdecfcc2a404add" }, "MMSplice/mtsplice": { "url": "https://zenodo.org/record/6602525/files/kipoi-docker_mmsplice-mtsplice-slim.sif?download=1", From 58b0bdbdafb2ce33dbecd72c8df80d145d2cab7f Mon Sep 17 00:00:00 2001 From: Haimasree Date: Sat, 18 Jun 2022 17:10:03 +0200 Subject: [PATCH 02/19] Updating model-to-singularity.json --- shared/containers/model-to-singularity.json | 20 ++++++++++---------- 1 file changed, 10 insertions(+), 10 deletions(-) diff --git a/shared/containers/model-to-singularity.json b/shared/containers/model-to-singularity.json index 6185728b4..210be790e 100644 --- a/shared/containers/model-to-singularity.json +++ b/shared/containers/model-to-singularity.json @@ -95,24 +95,24 @@ "md5": "51f7d11a9a45af47397e979614220473" }, "MMSplice/pathogenicity": { - "url": "https://zenodo.org/record/6659897/files/kipoi-docker_mmsplice-slim.sif?download=1", + "url": "https://zenodo.org/record/6603220/files/kipoi-docker_mmsplice-slim.sif?download=1", "name": "kipoi-docker_mmsplice-slim", - "md5": "48b3c342cb2023bd5cdecfcc2a404add" + "md5": "1f2ee90e10c762cf20dd2f768a4aac97" }, "MMSplice/splicingEfficiency": { - "url": "https://zenodo.org/record/6659897/files/kipoi-docker_mmsplice-slim.sif?download=1", + "url": "https://zenodo.org/record/6603220/files/kipoi-docker_mmsplice-slim.sif?download=1", "name": "kipoi-docker_mmsplice-slim", - "md5": "48b3c342cb2023bd5cdecfcc2a404add" + "md5": "1f2ee90e10c762cf20dd2f768a4aac97" }, "MMSplice/deltaLogitPSI": { - "url": "https://zenodo.org/record/6659897/files/kipoi-docker_mmsplice-slim.sif?download=1", + "url": "https://zenodo.org/record/6603220/files/kipoi-docker_mmsplice-slim.sif?download=1", "name": "kipoi-docker_mmsplice-slim", - "md5": "48b3c342cb2023bd5cdecfcc2a404add" + "md5": "1f2ee90e10c762cf20dd2f768a4aac97" }, "MMSplice/modularPredictions": { - "url": "https://zenodo.org/record/6659897/files/kipoi-docker_mmsplice-slim.sif?download=1", + "url": "https://zenodo.org/record/6603220/files/kipoi-docker_mmsplice-slim.sif?download=1", "name": "kipoi-docker_mmsplice-slim", - "md5": "48b3c342cb2023bd5cdecfcc2a404add" + "md5": "1f2ee90e10c762cf20dd2f768a4aac97" }, "MMSplice/mtsplice": { "url": "https://zenodo.org/record/6602525/files/kipoi-docker_mmsplice-mtsplice-slim.sif?download=1", @@ -170,9 +170,9 @@ "md5": "bc638fd09bdaa5d16dd24df1a245f3cb" }, "APARENT/site_probabilities": { - "url": "https://zenodo.org/record/6603287/files/kipoi-docker_aparent-site_probabilities-slim.sif?download=1", + "url": "https://zenodo.org/record/6659898/files/kipoi-docker_aparent-site_probabilities-slim.sif?download=1", "name": "kipoi-docker_aparent-site_probabilities-slim", - "md5": "c36f7a64e2628ca626c529a8c3883b9c" + "md5": "57d939cb0901db474f4395148df5bcce" }, "APARENT/veff": { "url": "https://zenodo.org/record/6600778/files/kipoi-docker_aparent-veff-slim.sif?download=1", From d47a1c76530ad2ec5be909145279ee77606f83e1 Mon Sep 17 00:00:00 2001 From: Haimasree Date: Sat, 18 Jun 2022 17:10:37 +0200 Subject: [PATCH 03/19] Updating model-to-singularity.json --- shared/containers/model-to-singularity.json | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/shared/containers/model-to-singularity.json b/shared/containers/model-to-singularity.json index 210be790e..373b8ff7e 100644 --- a/shared/containers/model-to-singularity.json +++ b/shared/containers/model-to-singularity.json @@ -170,14 +170,14 @@ "md5": "bc638fd09bdaa5d16dd24df1a245f3cb" }, "APARENT/site_probabilities": { - "url": "https://zenodo.org/record/6659898/files/kipoi-docker_aparent-site_probabilities-slim.sif?download=1", + "url": "https://zenodo.org/record/6603287/files/kipoi-docker_aparent-site_probabilities-slim.sif?download=1", "name": "kipoi-docker_aparent-site_probabilities-slim", - "md5": "57d939cb0901db474f4395148df5bcce" + "md5": "c36f7a64e2628ca626c529a8c3883b9c" }, "APARENT/veff": { - "url": "https://zenodo.org/record/6600778/files/kipoi-docker_aparent-veff-slim.sif?download=1", + "url": "https://zenodo.org/record/6659899/files/kipoi-docker_aparent-veff-slim.sif?download=1", "name": "kipoi-docker_aparent-veff-slim", - "md5": "2ce04d6d7a51c1bce7c90fc461463bdd" + "md5": "80a20f0c275b9678e241dae5616657b3" }, "DeepSTARR": { "url": "https://zenodo.org/record/6600775/files/kipoi-docker_deepstarr-slim.sif?download=1", From aa098c8dbd76666457b8deffb6189b77bbc8ec7b Mon Sep 17 00:00:00 2001 From: Haimasree Date: Sat, 18 Jun 2022 17:13:57 +0200 Subject: [PATCH 04/19] Updating model-to-singularity.json --- shared/containers/model-to-singularity.json | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/shared/containers/model-to-singularity.json b/shared/containers/model-to-singularity.json index 373b8ff7e..b563c4924 100644 --- a/shared/containers/model-to-singularity.json +++ b/shared/containers/model-to-singularity.json @@ -175,9 +175,9 @@ "md5": "c36f7a64e2628ca626c529a8c3883b9c" }, "APARENT/veff": { - "url": "https://zenodo.org/record/6659899/files/kipoi-docker_aparent-veff-slim.sif?download=1", + "url": "https://zenodo.org/record/6600778/files/kipoi-docker_aparent-veff-slim.sif?download=1", "name": "kipoi-docker_aparent-veff-slim", - "md5": "80a20f0c275b9678e241dae5616657b3" + "md5": "2ce04d6d7a51c1bce7c90fc461463bdd" }, "DeepSTARR": { "url": "https://zenodo.org/record/6600775/files/kipoi-docker_deepstarr-slim.sif?download=1", @@ -190,8 +190,8 @@ "md5": "99cf6f9aa01845b98a7d556f8a5851ea" }, "TREDNet": { - "url": "https://zenodo.org/record/6606579/files/kipoi-docker_trednet-slim.sif?download=1", + "url": "https://zenodo.org/record/6659904/files/kipoi-docker_trednet-slim.sif?download=1", "name": "kipoi-docker_trednet-slim", - "md5": "4d1b1c3fbf1033bf05e2af13963711b5" + "md5": "060278a88e81b1ef51eaea4aeb80fee4" } } \ No newline at end of file From 4acd2b3e360195735d9f9cda1a1f7bbb8aeb8783 Mon Sep 17 00:00:00 2001 From: Haimasree Date: Sat, 18 Jun 2022 17:13:58 +0200 Subject: [PATCH 05/19] Updating model-to-singularity.json --- shared/containers/model-to-singularity.json | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/shared/containers/model-to-singularity.json b/shared/containers/model-to-singularity.json index b563c4924..54387158f 100644 --- a/shared/containers/model-to-singularity.json +++ b/shared/containers/model-to-singularity.json @@ -165,9 +165,9 @@ "md5": "253b65d96eff17f6acef91772f38a341" }, "DeepFlyBrain": { - "url": "https://zenodo.org/record/6573788/files/kipoi-docker_deepflybrain-slim.sif?download=1", + "url": "https://zenodo.org/record/6659905/files/kipoi-docker_deepflybrain-slim.sif?download=1", "name": "kipoi-docker_deepflybrain-slim", - "md5": "bc638fd09bdaa5d16dd24df1a245f3cb" + "md5": "18d87069694d48d2d68754b9eafca70d" }, "APARENT/site_probabilities": { "url": "https://zenodo.org/record/6603287/files/kipoi-docker_aparent-site_probabilities-slim.sif?download=1", @@ -190,8 +190,8 @@ "md5": "99cf6f9aa01845b98a7d556f8a5851ea" }, "TREDNet": { - "url": "https://zenodo.org/record/6659904/files/kipoi-docker_trednet-slim.sif?download=1", + "url": "https://zenodo.org/record/6606579/files/kipoi-docker_trednet-slim.sif?download=1", "name": "kipoi-docker_trednet-slim", - "md5": "060278a88e81b1ef51eaea4aeb80fee4" + "md5": "4d1b1c3fbf1033bf05e2af13963711b5" } } \ No newline at end of file From 0771c282594b897cd15bbafa164cfc63c4233be3 Mon Sep 17 00:00:00 2001 From: Haimasree Date: Sat, 18 Jun 2022 17:13:58 +0200 Subject: [PATCH 06/19] Updating model-to-singularity.json --- shared/containers/model-to-singularity.json | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/shared/containers/model-to-singularity.json b/shared/containers/model-to-singularity.json index 54387158f..2ce42858e 100644 --- a/shared/containers/model-to-singularity.json +++ b/shared/containers/model-to-singularity.json @@ -140,9 +140,9 @@ "md5": "35f7789de9c58f9df5bef9631e1a0930" }, "AttentiveChrome": { - "url": "https://zenodo.org/record/6602384/files/kipoi-docker_attentivechrome-slim.sif?download=1", + "url": "https://zenodo.org/record/6659903/files/kipoi-docker_attentivechrome-slim.sif?download=1", "name": "kipoi-docker_attentivechrome-slim", - "md5": "b604b024b5f8e866948b2ab801799573" + "md5": "1207491ed8ab6b5604a8528048b49c12" }, "BPNet-OSKN": { "url": "https://zenodo.org/record/6600795/files/kipoi-docker_bpnet-oskn-slim.sif?download=1", @@ -165,9 +165,9 @@ "md5": "253b65d96eff17f6acef91772f38a341" }, "DeepFlyBrain": { - "url": "https://zenodo.org/record/6659905/files/kipoi-docker_deepflybrain-slim.sif?download=1", + "url": "https://zenodo.org/record/6573788/files/kipoi-docker_deepflybrain-slim.sif?download=1", "name": "kipoi-docker_deepflybrain-slim", - "md5": "18d87069694d48d2d68754b9eafca70d" + "md5": "bc638fd09bdaa5d16dd24df1a245f3cb" }, "APARENT/site_probabilities": { "url": "https://zenodo.org/record/6603287/files/kipoi-docker_aparent-site_probabilities-slim.sif?download=1", From d5090295fbe4da14b2e521e4a70784626febb7c2 Mon Sep 17 00:00:00 2001 From: Haimasree Date: Sat, 18 Jun 2022 17:14:19 +0200 Subject: [PATCH 07/19] Updating model-to-singularity.json --- shared/containers/model-to-singularity.json | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/shared/containers/model-to-singularity.json b/shared/containers/model-to-singularity.json index 2ce42858e..86cd85210 100644 --- a/shared/containers/model-to-singularity.json +++ b/shared/containers/model-to-singularity.json @@ -120,9 +120,9 @@ "md5": "9fdeca0688df85666affdad2b784f5ba" }, "DeepMEL": { - "url": "https://zenodo.org/record/6642627/files/kipoi-docker_deepmel-slim.sif?download=1", + "url": "https://zenodo.org/record/6659908/files/kipoi-docker_deepmel-slim.sif?download=1", "name": "kipoi-docker_deepmel-slim", - "md5": "d8ecb052ca6d465983e86bc4efeb0439" + "md5": "87e6e74cfee5f0f1d43ff44a0d493d4b" }, "Framepool": { "url": "https://zenodo.org/record/6602452/files/kipoi-docker_framepool-slim.sif?download=1", @@ -140,9 +140,9 @@ "md5": "35f7789de9c58f9df5bef9631e1a0930" }, "AttentiveChrome": { - "url": "https://zenodo.org/record/6659903/files/kipoi-docker_attentivechrome-slim.sif?download=1", + "url": "https://zenodo.org/record/6602384/files/kipoi-docker_attentivechrome-slim.sif?download=1", "name": "kipoi-docker_attentivechrome-slim", - "md5": "1207491ed8ab6b5604a8528048b49c12" + "md5": "b604b024b5f8e866948b2ab801799573" }, "BPNet-OSKN": { "url": "https://zenodo.org/record/6600795/files/kipoi-docker_bpnet-oskn-slim.sif?download=1", From 8cabccb4057c5acf5989fe3cfdd43723d0f101cd Mon Sep 17 00:00:00 2001 From: Haimasree Date: Sat, 18 Jun 2022 17:14:20 +0200 Subject: [PATCH 08/19] Updating model-to-singularity.json --- shared/containers/model-to-singularity.json | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/shared/containers/model-to-singularity.json b/shared/containers/model-to-singularity.json index 86cd85210..47592c4aa 100644 --- a/shared/containers/model-to-singularity.json +++ b/shared/containers/model-to-singularity.json @@ -115,14 +115,14 @@ "md5": "1f2ee90e10c762cf20dd2f768a4aac97" }, "MMSplice/mtsplice": { - "url": "https://zenodo.org/record/6602525/files/kipoi-docker_mmsplice-mtsplice-slim.sif?download=1", + "url": "https://zenodo.org/record/6659900/files/kipoi-docker_mmsplice-mtsplice-slim.sif?download=1", "name": "kipoi-docker_mmsplice-mtsplice-slim", - "md5": "9fdeca0688df85666affdad2b784f5ba" + "md5": "c04350da245c2d08165157a099d670ab" }, "DeepMEL": { - "url": "https://zenodo.org/record/6659908/files/kipoi-docker_deepmel-slim.sif?download=1", + "url": "https://zenodo.org/record/6642627/files/kipoi-docker_deepmel-slim.sif?download=1", "name": "kipoi-docker_deepmel-slim", - "md5": "87e6e74cfee5f0f1d43ff44a0d493d4b" + "md5": "d8ecb052ca6d465983e86bc4efeb0439" }, "Framepool": { "url": "https://zenodo.org/record/6602452/files/kipoi-docker_framepool-slim.sif?download=1", From b2fda002175a929a7a1c464bbb1d0a94893793ba Mon Sep 17 00:00:00 2001 From: Haimasree Date: Sat, 18 Jun 2022 17:15:15 +0200 Subject: [PATCH 09/19] Updating model-to-singularity.json --- shared/containers/model-to-singularity.json | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/shared/containers/model-to-singularity.json b/shared/containers/model-to-singularity.json index 47592c4aa..9a27b6286 100644 --- a/shared/containers/model-to-singularity.json +++ b/shared/containers/model-to-singularity.json @@ -90,9 +90,9 @@ "md5": "f9517066497cbe83d8eda19df1d8f5f1" }, "extended_coda": { - "url": "https://zenodo.org/record/6602577/files/kipoi-docker_extended_coda-slim.sif?download=1", + "url": "https://zenodo.org/record/6659907/files/kipoi-docker_extended_coda-slim.sif?download=1", "name": "kipoi-docker_extended_coda-slim", - "md5": "51f7d11a9a45af47397e979614220473" + "md5": "081d5bec503d1eca7246aa409169440a" }, "MMSplice/pathogenicity": { "url": "https://zenodo.org/record/6603220/files/kipoi-docker_mmsplice-slim.sif?download=1", @@ -115,9 +115,9 @@ "md5": "1f2ee90e10c762cf20dd2f768a4aac97" }, "MMSplice/mtsplice": { - "url": "https://zenodo.org/record/6659900/files/kipoi-docker_mmsplice-mtsplice-slim.sif?download=1", + "url": "https://zenodo.org/record/6602525/files/kipoi-docker_mmsplice-mtsplice-slim.sif?download=1", "name": "kipoi-docker_mmsplice-mtsplice-slim", - "md5": "c04350da245c2d08165157a099d670ab" + "md5": "9fdeca0688df85666affdad2b784f5ba" }, "DeepMEL": { "url": "https://zenodo.org/record/6642627/files/kipoi-docker_deepmel-slim.sif?download=1", From 15cc23a36b68fab4d1940f7d5d76f37481422c2c Mon Sep 17 00:00:00 2001 From: Haimasree Date: Sat, 18 Jun 2022 17:15:15 +0200 Subject: [PATCH 10/19] Updating model-to-singularity.json --- shared/containers/model-to-singularity.json | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/shared/containers/model-to-singularity.json b/shared/containers/model-to-singularity.json index 9a27b6286..3b32152e0 100644 --- a/shared/containers/model-to-singularity.json +++ b/shared/containers/model-to-singularity.json @@ -90,9 +90,9 @@ "md5": "f9517066497cbe83d8eda19df1d8f5f1" }, "extended_coda": { - "url": "https://zenodo.org/record/6659907/files/kipoi-docker_extended_coda-slim.sif?download=1", + "url": "https://zenodo.org/record/6602577/files/kipoi-docker_extended_coda-slim.sif?download=1", "name": "kipoi-docker_extended_coda-slim", - "md5": "081d5bec503d1eca7246aa409169440a" + "md5": "51f7d11a9a45af47397e979614220473" }, "MMSplice/pathogenicity": { "url": "https://zenodo.org/record/6603220/files/kipoi-docker_mmsplice-slim.sif?download=1", @@ -180,9 +180,9 @@ "md5": "2ce04d6d7a51c1bce7c90fc461463bdd" }, "DeepSTARR": { - "url": "https://zenodo.org/record/6600775/files/kipoi-docker_deepstarr-slim.sif?download=1", + "url": "https://zenodo.org/record/6659901/files/kipoi-docker_deepstarr-slim.sif?download=1", "name": "kipoi-docker_deepstarr-slim", - "md5": "5246a01c215afa01e4ebe277cfa9faa9" + "md5": "298aab5c5c407fc141586cc1ef88528f" }, "scbasset": { "url": "https://zenodo.org/record/6639326/files/kipoi-docker_sharedpy3keras2tf2-slim.sif?download=1", From 967458fd852fb08a1bf1ac13fc6a866ffaf1bf28 Mon Sep 17 00:00:00 2001 From: Haimasree Date: Sat, 18 Jun 2022 17:16:45 +0200 Subject: [PATCH 11/19] Updating model-to-singularity.json --- shared/containers/model-to-singularity.json | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/shared/containers/model-to-singularity.json b/shared/containers/model-to-singularity.json index 3b32152e0..f5251fd72 100644 --- a/shared/containers/model-to-singularity.json +++ b/shared/containers/model-to-singularity.json @@ -130,9 +130,9 @@ "md5": "85c63a025076741924451925ec239319" }, "KipoiSplice": { - "url": "https://zenodo.org/record/6602421/files/kipoi-docker_kipoisplice-slim.sif?download=1", + "url": "https://zenodo.org/record/6659906/files/kipoi-docker_kipoisplice-slim.sif?download=1", "name": "kipoi-docker_kipoisplice-slim", - "md5": "db9f0b02e4a74da2d3c112ed3feb653f" + "md5": "8dece41e09e07523efdec35107510504" }, "deepTarget": { "url": "https://zenodo.org/record/6642581/files/kipoi-docker_deeptarget-slim.sif?download=1", @@ -180,9 +180,9 @@ "md5": "2ce04d6d7a51c1bce7c90fc461463bdd" }, "DeepSTARR": { - "url": "https://zenodo.org/record/6659901/files/kipoi-docker_deepstarr-slim.sif?download=1", + "url": "https://zenodo.org/record/6600775/files/kipoi-docker_deepstarr-slim.sif?download=1", "name": "kipoi-docker_deepstarr-slim", - "md5": "298aab5c5c407fc141586cc1ef88528f" + "md5": "5246a01c215afa01e4ebe277cfa9faa9" }, "scbasset": { "url": "https://zenodo.org/record/6639326/files/kipoi-docker_sharedpy3keras2tf2-slim.sif?download=1", From d84e7e14429a747e56070179afce6aba79bae5a9 Mon Sep 17 00:00:00 2001 From: Haimasree Date: Sat, 18 Jun 2022 17:17:27 +0200 Subject: [PATCH 12/19] Updating model-to-singularity.json --- shared/containers/model-to-singularity.json | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/shared/containers/model-to-singularity.json b/shared/containers/model-to-singularity.json index f5251fd72..2a4082192 100644 --- a/shared/containers/model-to-singularity.json +++ b/shared/containers/model-to-singularity.json @@ -130,9 +130,9 @@ "md5": "85c63a025076741924451925ec239319" }, "KipoiSplice": { - 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