- Clone the repository:
git clone https://github.com/karadavis-lab/suts_2024.git
- Ensure you have Conda / Anaconda Installed, we recommend installing Miniforge.
cd
intosuts_2024
and create the conda environment with
conda env create -f environment.yml
-
Activate the environment with
conda activate suts
-
There are two notebooks which can be run in the
scripts
directory:process_fcs.ipynb
if you would like to reproduce the data for vitessce.vitessce.ipynb
is the notebook for running the visualization.
Currently we recommend just running the vitessce notebook as the data is already preprocessed for ingestion.