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120 followers · 347 following

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Achievement: Pair Extraordinairex2Achievement: Starstruckx2Achievement: Pull Sharkx3Achievement: YOLOAchievement: QuickdrawAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Pair Extraordinairex2Achievement: Starstruckx2Achievement: Pull Sharkx3Achievement: YOLOAchievement: QuickdrawAchievement: Arctic Code Vault Contributor

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kapsakcj/README.md

Hi there 👋

Hi! I'm Curtis. I'm a bioinformatician working with Theiagen Genomics. I'm a fan of microbial genomics 🦠, reproducible bioinformatics methods ♻️, and DNA sequencing 🧬!

  • 🌱 I’m currently learning Python, WDL, Nextflow, and Continuous Integration techniques
  • 👯 I’m looking to collaborate on developing dockerfiles to make installation and usage of bioinformatics tools easier! See here
  • 💬 Ask me about - Microbial & viral genomes, plasmids, software containers
  • 📫 How to reach me - Twitter, LinkedIn, email kapsakcj (at) gmail (dot) com,
  • 😄 Pronouns - He/Him

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  1. StaPH-B/docker-builds StaPH-B/docker-builds Public

    📦 🐳 Dockerfiles and documentation on tools for public health bioinformatics

    Dockerfile 196 124

  2. theiagen/public_health_bioinformatics theiagen/public_health_bioinformatics Public

    Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health concern.

    WDL 37 17

  3. theiagen/public_health_viral_genomics theiagen/public_health_viral_genomics Public

    Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, especially SARS-CoV-2

    WDL 41 17

  4. theiagen/public_health_bacterial_genomics theiagen/public_health_bacterial_genomics Public

    WDL 27 14

  5. win10-linux-conda-how-to win10-linux-conda-how-to Public

    A tutorial on how to set up a Linux environment on a computer running Windows 10. Followed by how to install and use (bio)conda.

    41 9

  6. nanoporeWorkflow nanoporeWorkflow Public

    🧬 Shell scripts for working with bacterial isolate Nanopore sequence data on CDC servers

    Shell 9 3