Big changes!

Output is now .fits formatted.
Output contains backprojection, parameters, and i, j, theta arrays.
Fast_hough is a faster thanks to einsum.

Functions interpret() and viewer() are Non-Functional right now, so
avoid -d.

Author: Schudel888

.gitignore

@@ -2,199 +2,17 @@
 ## Project Specific
 #################
 lrginput/*
-*.pyc
-*.exe
-
-#################
-## Eclipse
-#################
-
-*.pydevproject
-.project
-.metadata
-bin/
-tmp/
-*.tmp
-*.bak
-*.swp
-*~.nib
-local.properties
-.classpath
-.settings/
-.loadpath
-
-# External tool builders
-.externalToolBuilders/
-
-# Locally stored "Eclipse launch configurations"
-*.launch
-
-# CDT-specific
-.cproject
-
-# PDT-specific
-.buildpath
-
-
-#################
-## Visual Studio
-#################
-
-## Ignore Visual Studio temporary files, build results, and
-## files generated by popular Visual Studio add-ons.
-
-# User-specific files
-*.suo
-*.user
-*.sln.docstates
-
-# Build results
-
-[Dd]ebug/
-[Rr]elease/
-x64/
-build/
-[Bb]in/
-[Oo]bj/
-
-# MSTest test Results
-[Tt]est[Rr]esult*/
-[Bb]uild[Ll]og.*
-
-*_i.c
-*_p.c
-*.ilk
-*.meta
-*.obj
-*.pch
-*.pdb
-*.pgc
-*.pgd
-*.rsp
-*.sbr
-*.tlb
-*.tli
-*.tlh
-*.tmp
-*.tmp_proj
-*.log
-*.vspscc
-*.vssscc
-.builds
-*.pidb
-*.log
-*.scc
-
-# Visual C++ cache files
-ipch/
-*.aps
-*.ncb
-*.opensdf
-*.sdf
-*.cachefile
-
-# Visual Studio profiler
-*.psess
-*.vsp
-*.vspx
-
-# Guidance Automation Toolkit
-*.gpState
-
-# ReSharper is a .NET coding add-in
-_ReSharper*/
-*.[Rr]e[Ss]harper
-
-# TeamCity is a build add-in
-_TeamCity*
-
-# DotCover is a Code Coverage Tool
-*.dotCover
-
-# NCrunch
-*.ncrunch*
-.*crunch*.local.xml
-
-# Installshield output folder
-[Ee]xpress/
-
-# DocProject is a documentation generator add-in
-DocProject/buildhelp/
-DocProject/Help/*.HxT
-DocProject/Help/*.HxC
-DocProject/Help/*.hhc
-DocProject/Help/*.hhk
-DocProject/Help/*.hhp
-DocProject/Help/Html2
-DocProject/Help/html
-
-# Click-Once directory
-publish/
-
-# Publish Web Output
-*.Publish.xml
-*.pubxml
-
-# NuGet Packages Directory
-## TODO: If you have NuGet Package Restore enabled, uncomment the next line
-#packages/
-
-# Windows Azure Build Output
-csx
-*.build.csdef
-
-# Windows Store app package directory
-AppPackages/
-
-# Others
-sql/
-*.Cache
-ClientBin/
-[Ss]tyle[Cc]op.*
-~$*
-*~
-*.dbmdl
-*.[Pp]ublish.xml
-*.pfx
-*.publishsettings
-
-# RIA/Silverlight projects
-Generated_Code/
-
-# Backup & report files from converting an old project file to a newer
-# Visual Studio version. Backup files are not needed, because we have git ;-)
-_UpgradeReport_Files/
-Backup*/
-UpgradeLog*.XML
-UpgradeLog*.htm
-
-# SQL Server files
-App_Data/*.mdf
-App_Data/*.ldf
-
-#############
-## Windows detritus
-#############
-
-# Windows image file caches
-Thumbs.db
-ehthumbs.db
-
-# Folder config file
-Desktop.ini
-
-# Recycle Bin used on file shares
-$RECYCLE.BIN/
-
-# Mac crap
-.DS_Store
-
 
 #############
 ## Python
 #############
 
-#*.py[co]
+*.pyc
+*.pyo
+*.pyd
+*.c
+*.cpp
+*.html
 
 # Packages
 *.egg

README

@@ -7,21 +7,19 @@ This is the Rolling Hough Transform, described in Clark, Peek, Putman 2014 (arXi
 ==================================
 Requirements (Python 2.7 Only)
 ==================================
-from __future__ import division
+from __future__ import division #Must be first line of code in the file
 from astropy.io import fits
-#from scipy.stats import norm
-#from mpl_toolkits.mplot3d import Axes3D
-#from mayavi import mlab
-#from astropy import wcs
-import numpy as np
 import scipy.ndimage
 import math
 import os
-import matplotlib.pyplot as plt
 import sys
 import string
 import tempfile 
 import shutil
+import time 
+import fnmatch
+import matplotlib.pyplot as plt
+import numpy as np
 
 ==================================
 Instructions For Use (Python)

batch1/smalltest_xyt00.fits

@@ -0,0 +1,10 @@
+
+import numpy as np
+cimport numpy as np
+
+DTYPE = np.int
+ctypedef np.int_t DTYPE_t
+
+def fast_hough(np.ndarray in_arr, np.ndarray xyt): 
+    return np.einsum('ijk,ij', xyt, in_arr)
+