Skip to content

Releases: jr-leary7/scLANE

v0.7.7

10 Nov 17:39
9967dbb
Compare
Choose a tag to compare
Merge pull request #156 from jr-leary7/dev

Dev

v0.7.6

21 Oct 21:29
21f14e6
Compare
Choose a tag to compare
Merge pull request #149 from jr-leary7/dev

added dataset -- closes #148

v0.7.5

19 Oct 17:59
5c61bdd
Compare
Choose a tag to compare
Merge pull request #145 from jr-leary7/dev

fixing CI/CD bugs -- closes #144

v0.7.4

11 Oct 17:11
226b31b
Compare
Choose a tag to compare
Merge pull request #137 from jr-leary7/dev

updated README and bumped version

v0.7.3

25 Sep 17:22
5248ffe
Compare
Choose a tag to compare
  • See News.md for changes

v0.7.2

20 Sep 19:09
5606a50
Compare
Choose a tag to compare
  • Added summarizeModels() (thank you Rhonda !!), which sums up coefficients over intervals of pseudotime
    • This greatly aids interpretability within & between lineages by allowing fold-change style comparisons using the estimated slopes
  • Added theme_scLANE() for pretty plots
  • Refactored testDynamic() to be more modular and the code more terse
  • Updated test suite & README to match the above changes

v0.7.1

15 Jul 21:42
248b944
Compare
Choose a tag to compare

biggest change is to expression matrix input - now gene x cell instead of cell x gene, and all common scRNA data structures are accepted & parsed accordingly

v0.7.0: Merge pull request #97 from jr-leary7/dev

19 Jun 04:03
c73f4f6
Compare
Choose a tag to compare
  • adds functionality for per-cell sequencing depth size factor offsets in all model types
  • all downstream analysis utilities reflect these changes as well
  • minor changes were made internally to improve speed, especially in the GEE implementation

v0.6.2

29 May 18:24
da39bc2
Compare
Choose a tag to compare

Improved documentation, streamlined parallel processing in secondary functions

v0.6.1

18 Apr 14:00
23ee0a4
Compare
Choose a tag to compare

First non-pre-release version. Other than GLMMs (still under construction), this version is ready to go !