build #217
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: build | |
| on: | |
| push: | |
| pull_request: | |
| schedule: | |
| - cron: '0 20 * * 2' | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: [3.8,3.9,"3.10","3.11","3.12","3.13"] | |
| env: | |
| PYTHON_COVREPORTS_VERSION: 3.13 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install the GSL | |
| run: sudo apt-get install libgsl-dev | |
| - name: Install lcov | |
| run: | | |
| wget http://downloads.sourceforge.net/ltp/lcov-1.14.tar.gz | |
| tar xf lcov-1.14.tar.gz | |
| sudo make -C lcov-1.14/ install | |
| - name: Install Python dependencies | |
| run: pip install --upgrade --upgrade-strategy eager numpy scipy matplotlib setuptools | |
| - name: Install package | |
| run: | | |
| make COVERAGE=1 | |
| sudo make install | |
| make pywrapper | |
| echo "PYTHONPATH=$(echo $PYTHONPATH:$PWD/py)" >> $GITHUB_ENV | |
| - name: Test with pytest | |
| working-directory: tests | |
| run: | | |
| pip install pytest pytest-cov | |
| pytest -v test_oned.py test_twod.py test_fix.py test_log.py --cov=extreme_deconvolution --cov-config ../.coveragerc_travis --cov-report=term --cov-report=xml | |
| - name: Generate code coverage | |
| if: ${{ matrix.python-version == env.PYTHON_COVREPORTS_VERSION }} | |
| run: | | |
| lcov --capture --base-directory . --directory /home/runner/work/extreme-deconvolution/extreme-deconvolution/src/ --no-external --output-file tests/coverage.info | |
| - name: Upload coverage reports to codecov | |
| if: ${{ matrix.python-version == env.PYTHON_COVREPORTS_VERSION }} | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| directory: tests | |
| token: ${{ secrets.CODECOV_TOKEN }} |