build

build #205

	name: build

	on:
	push:
	pull_request:
	schedule:
	- cron: '0 20 * * 2'

	jobs:
	build:
	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version: [3.7,3.8,3.9,"3.10"]
	env:
	PYTHON_COVREPORTS_VERSION: 3.9
	steps:
	- uses: actions/checkout@v4
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install the GSL
	run: sudo apt-get install libgsl-dev
	- name: Install lcov
	run: \|
	wget http://downloads.sourceforge.net/ltp/lcov-1.14.tar.gz
	tar xf lcov-1.14.tar.gz
	sudo make -C lcov-1.14/ install
	- name: Install Python dependencies
	run: pip install --upgrade --upgrade-strategy eager numpy scipy matplotlib setuptools
	- name: Install package
	run: \|
	make COVERAGE=1
	sudo make install
	make pywrapper
	echo "PYTHONPATH=$(echo $PYTHONPATH:$PWD/py)" >> $GITHUB_ENV
	- name: Test with pytest
	working-directory: tests
	run: \|
	pip install pytest pytest-cov
	pytest -v test_oned.py test_twod.py test_fix.py test_log.py --cov=extreme_deconvolution --cov-config ../.coveragerc_travis --cov-report=term --cov-report=xml
	- name: Generate code coverage
	if: ${{ matrix.python-version == env.PYTHON_COVREPORTS_VERSION }}
	run: \|
	lcov --capture --base-directory . --directory /home/runner/work/extreme-deconvolution/extreme-deconvolution/src/ --no-external --output-file tests/coverage.info
	- name: Upload coverage reports to codecov
	if: ${{ matrix.python-version == env.PYTHON_COVREPORTS_VERSION }}
	uses: codecov/codecov-action@v4
	with:
	directory: tests
	token: ${{ secrets.CODECOV_TOKEN }}

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