Add example using xarray atmospheric data #23
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| # Our minimal suite of tests that run on each pull request | |
| name: PR Test | |
| on: | |
| pull_request: | |
| branches: | |
| - main | |
| - "v*x" | |
| concurrency: | |
| group: test-${{ github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| COLUMNS: 120 | |
| jobs: | |
| import_lint: | |
| name: Import lint | |
| timeout-minutes: 5 | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python 3.11 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.11 | |
| - name: Install dependencies | |
| run: | | |
| pip install --upgrade pip | |
| pip install tox | |
| - name: Run import lint | |
| run: tox -e import-lint | |
| manifest: | |
| # make sure all necessary files will be bundled in the release | |
| name: Check Manifest | |
| timeout-minutes: 15 | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.11" | |
| cache-dependency-path: pyproject.toml | |
| cache: 'pip' | |
| - name: Install Dependencies | |
| run: pip install --upgrade pip | |
| - name: Install Napari dev | |
| run: pip install -e .[build] | |
| env: | |
| PIP_CONSTRAINT: resources/constraints/constraints_py3.11.txt | |
| - name: Make Typestubs | |
| run: | | |
| make typestubs | |
| - name: Check Manifest | |
| run: | | |
| make check-manifest | |
| localization_syntax: | |
| # make sure all necessary files will be bundled in the release | |
| name: Check l18n syntax | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 2 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.x" | |
| - name: Check localization formatting | |
| run: | | |
| pip install --upgrade pip semgrep | |
| # f"..." and f'...' are the same for semgrep | |
| semgrep --error --lang python --pattern 'trans._(f"...")' napari | |
| semgrep --error --lang python --pattern "trans._(\$X.format(...))" napari | |
| build_wheel: | |
| name: Build wheel | |
| uses: ./.github/workflows/reusable_build_wheel.yml | |
| test_initial: | |
| name: Initial test | |
| uses: ./.github/workflows/reusable_run_tox_test.yml | |
| needs: build_wheel | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - python: 3.9 | |
| platform: ubuntu-latest | |
| backend: pyqt5 | |
| pydantic: "_pydantic_1" | |
| coverage: no_cov | |
| min_req: "" | |
| - python: 3.12 | |
| platform: ubuntu-latest | |
| backend: pyqt6 | |
| pydantic: "" | |
| coverage: no_cov | |
| min_req: "" | |
| with: | |
| python_version: ${{ matrix.python }} | |
| platform: ${{ matrix.platform }} | |
| qt_backend: ${{ matrix.backend }} | |
| coverage: ${{ matrix.coverage }} | |
| min_req: ${{ matrix.MIN_REQ }} | |
| constraints_suffix: ${{ matrix.pydantic }} | |
| test: | |
| name: ${{ matrix.platform }} | |
| uses: ./.github/workflows/reusable_run_tox_test.yml | |
| needs: test_initial | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| platform: [ ubuntu-latest ] | |
| python: [ "3.10", "3.11" ] | |
| backend: [ "pyqt5,pyside6" ] | |
| coverage: [ cov ] | |
| pydantic: ["_pydantic_1"] | |
| include: | |
| # Windows py310 | |
| - python: "3.10" | |
| platform: windows-latest | |
| backend: pyqt5 #,pyside2 | |
| coverage: no_cov | |
| - python: "3.12" | |
| platform: windows-latest | |
| backend: pyqt6 | |
| coverage: cov | |
| - python: "3.12" | |
| platform: macos-13 | |
| backend: pyqt5 | |
| coverage: no_cov | |
| - python: "3.12" | |
| platform: macos-latest | |
| backend: pyqt5 | |
| coverage: no_cov | |
| # minimum specified requirements | |
| - python: "3.9" | |
| platform: ubuntu-20.04 | |
| backend: pyqt5 | |
| MIN_REQ: 1 | |
| coverage: cov | |
| - python: "3.11" | |
| platform: ubuntu-22.04 | |
| backend: pyqt5 | |
| coverage: cov | |
| pydantic: "" | |
| tox_extras: "optional" | |
| # test without any Qt backends | |
| - python: "3.10" | |
| platform: ubuntu-20.04 | |
| backend: headless | |
| coverage: no_cov | |
| - python: "3.12" | |
| platform: ubuntu-latest | |
| backend: pyqt6 | |
| coverage: cov | |
| tox_extras: "testing_extra" | |
| # pyside2 test | |
| - python: "3.10" | |
| platform: ubuntu-latest | |
| backend: pyside2 | |
| coverage: no_cov | |
| with: | |
| python_version: ${{ matrix.python }} | |
| platform: ${{ matrix.platform }} | |
| qt_backend: ${{ matrix.backend }} | |
| min_req: ${{ matrix.MIN_REQ }} | |
| coverage: ${{ matrix.coverage }} | |
| tox_extras: ${{ matrix.tox_extras }} | |
| constraints_suffix: ${{ matrix.pydantic }} | |
| test_pip_install: | |
| needs: test_initial | |
| name: pip install | |
| uses: ./.github/workflows/reusable_pip_test.yml | |
| test_examples: | |
| name: test examples | |
| uses: ./.github/workflows/reusable_run_tox_test.yml | |
| needs: test_initial | |
| with: | |
| toxenv: py39-linux-pyside2-examples-cov | |
| timeout: 60 | |
| python_version: 3.9 | |
| constraints_suffix: _examples | |
| coverage: cov | |
| coverage_report: | |
| if: ${{ always() }} | |
| needs: | |
| - test | |
| - test_examples | |
| uses: ./.github/workflows/reusable_coverage_upload.yml | |
| secrets: | |
| codecov_token: ${{ secrets.CODECOV_TOKEN }} | |
| test_benchmarks: | |
| name: test benchmarks | |
| runs-on: ubuntu-latest | |
| needs: test_initial | |
| timeout-minutes: 60 | |
| env: | |
| GIT_LFS_SKIP_SMUDGE: 1 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.11 | |
| cache-dependency-path: pyproject.toml | |
| - uses: tlambert03/setup-qt-libs@v1 | |
| - uses: octokit/[email protected] | |
| # here we get hash of the latest release commit to compare with PR | |
| id: latest_release | |
| with: | |
| route: GET /repos/{owner}/{repo}/releases/latest | |
| owner: napari | |
| repo: napari | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: install dependencies | |
| run: | | |
| pip install --upgrade pip | |
| pip install "asv[virtualenv]" | |
| env: | |
| PIP_CONSTRAINT: resources/constraints/benchmark.txt | |
| - name: asv machine | |
| run: asv machine --yes | |
| - name: Run benchmarks PR | |
| uses: aganders3/headless-gui@v2 | |
| with: | |
| run: | | |
| asv run --show-stderr --quick --attribute timeout=300 HEAD^! | |
| env: | |
| PR: 1 # prevents asv from running very compute-intensive benchmarks | |
| PIP_CONSTRAINT: ${{ github.workspace }}/resources/constraints/benchmark.txt | |
| - name: Run benchmarks latest release | |
| # here we check if the benchmark on the latest release is not broken | |
| uses: aganders3/headless-gui@v2 | |
| with: | |
| run: | | |
| asv run --show-stderr --quick --attribute timeout=300 ${{ fromJSON(steps.latest_release.outputs.data).target_commitish }}^! | |
| env: | |
| PR: 1 # prevents asv from running very compute-intensive benchmarks | |
| PIP_CONSTRAINT: ${{ github.workspace }}/resources/constraints/benchmark.txt |