.pre-commit-config.yaml

repos:
- repo: https://github.com/pre-commit/pre-commit-hooks
  rev: v4.4.0
  hooks:
  - id: check-added-large-files
  - id: check-case-conflict
  - id: check-merge-conflict
  - id: check-shebang-scripts-are-executable
  - id: check-symlinks
  - id: check-toml
  - id: check-yaml
  - id: debug-statements
  - id: destroyed-symlinks
  - id: detect-private-key
  - id: end-of-file-fixer
  - id: fix-byte-order-marker
  - id: fix-encoding-pragma
    args: [--remove]
  - id: mixed-line-ending
  - id: trailing-whitespace
- repo: https://github.com/pre-commit/pygrep-hooks
  rev: v1.10.0
  hooks:
  - id: python-check-blanket-noqa
  - id: python-check-blanket-type-ignore
  - id: python-use-type-annotations
  - id: rst-backticks
  - id: rst-directive-colons
  - id: rst-inline-touching-normal
- repo: https://github.com/PyCQA/bandit
  rev: 1.7.5
  hooks:
  - id: bandit
    args: [--skip=B101, --quiet]
- repo: https://github.com/psf/black
  rev: 23.3.0
  hooks:
  - id: black
- repo: https://github.com/PyCQA/flake8
  rev: 6.0.0
  hooks:
  - id: flake8
- repo: https://github.com/PyCQA/isort
  rev: 5.12.0
  hooks:
  - id: isort
- repo: https://github.com/pre-commit/mirrors-mypy
  rev: v1.3.0
  hooks:
  - id: mypy
    additional_dependencies:
    - numpy~=1.22.2
    - pydicom~=2.2.2
    - pymedio~=0.2.2
    - pytest~=7.0.1
    - scikit-image~=0.19.1
    - scikit-learn~=1.0.2
    args: [--no-warn-unused-ignores]
    exclude: ^(setup.py)$
- repo: https://github.com/adrienverge/yamllint.git
  rev: v1.32.0
  hooks:
  - id: yamllint
- repo: https://github.com/jumanjihouse/pre-commit-hook-yamlfmt
  rev: 0.2.3
  hooks:
  - id: yamlfmt
    args: [--mapping, '2', --sequence, '2', --offset, '0', --width, '100', -e, -p]
- repo: https://github.com/asottile/setup-cfg-fmt
  rev: v2.2.0
  hooks:
  - id: setup-cfg-fmt