packages.bib

@Manual{R-blandr,
  title  = {{blandr}: {Bland-Altman} method comparison},
  author = {Deepankar Datta},
  note   = {R package version 0.5.1},
  year   = {2018},
  url    = {https://github.com/deepankardatta/blandr/},
}

@Manual{R-dagitty,
  title  = {{dagitty}: Graphical analysis of structural causal models},
  author = {Johannes Textor and Benito {van der Zander} and Ankur Ankan},
  note   = {R package version 0.3-1},
  year   = {2021},
  url    = {https://CRAN.R-project.org/package=dagitty},
}

@Manual{R-dmacs,
  title  = {{dmacs}: Measurement nonequivalence effect size calculator},
  author = {David Dueber},
  note   = {R package version 0.1.0},
  year   = {2019},
  url    = {https://github.com/ddueber/dmacs},
}

@Manual{R-gridExtra,
  title  = {{gridExtra}: Miscellaneous functions for "grid" graphics},
  author = {Baptiste Auguie},
  note   = {R package version 2.3},
  year   = {2017},
  url    = {https://CRAN.R-project.org/package=gridExtra},
}

@Manual{R-gtheory,
  title  = {{gtheory}: Apply generalizability theory with {R}},
  author = {Christopher T. Moore},
  note   = {R package version 0.1.2},
  year   = {2016},
  url    = {http://EvaluationDashboard.com},
}

@Manual{R-MBESS,
  title  = {{MBESS}: The {MBESS} {R} package},
  author = {Ken Kelley},
  note   = {R package version 4.8.0},
  year   = {2020},
  url    = {http://nd.edu/~kkelley/site/MBESS.html},
}

@Manual{R-mirt,
  title  = {{mirt}: Multidimensional item response theory},
  author = {Phil Chalmers},
  note   = {R package version 1.33.2},
  year   = {2020},
  url    = {https://CRAN.R-project.org/package=mirt},
}

@Manual{R-nFactors,
  title  = {{nFactors}: Parallel analysis and other non graphical solutions to the {Cattell} scree test},
  author = {Gilles Raiche and David Magis},
  note   = {R package version 2.4.1},
  year   = {2020},
  url    = {https://CRAN.R-project.org/package=nFactors},
}

@Manual{R-pROC,
  title  = {{pROC}: Display and analyze {ROC} curves},
  author = {Xavier Robin and Natacha Turck and Alexandre Hainard and Natalia Tiberti and Frédérique Lisacek and Jean-Charles Sanchez and Markus Müller},
  note   = {R package version 1.17.0.1},
  year   = {2021},
  url    = {http://expasy.org/tools/pROC/},
}

@Manual{R-ResourceSelection,
  title  = {{ResourceSelection}: Resource selection (probability) functions for use-availability data},
  author = {Subhash R. Lele and Jonah L. Keim and Peter Solymos},
  note   = {R package version 0.3-5},
  year   = {2019},
  url    = {https://github.com/psolymos/ResourceSelection},
}

@Manual{R-rms,
  title  = {{rms}: Regression modeling strategies},
  author = {Frank E. {Harrell, Jr.}},
  note   = {R package version 6.1-1},
  year   = {2021},
  url    = {https://CRAN.R-project.org/package=rms},
}

@Manual{R-snow,
  title  = {{snow}: Simple network of workstations},
  author = {Luke Tierney and A. J. Rossini and Na Li and H. Sevcikova},
  note   = {R package version 0.4-3},
  year   = {2018},
  url    = {https://CRAN.R-project.org/package=snow},
}

@Manual{R-tinytex,
  title  = {{tinytex}: Helper functions to install and maintain {TeX} {Live}, and compile {LaTeX} documents},
  author = {Yihui Xie},
  note   = {R package version 0.29},
  year   = {2021},
  url    = {https://github.com/yihui/tinytex},
}

@Manual{R-userfriendlyscience,
  title  = {{userfriendlyscience}: Quantitative analysis made accessible},
  author = {Gjalt-Jorn Peters},
  note   = {R package version 0.7.2},
  year   = {2018},
  url    = {http://userfriendlyscience.com},
}

@Manual{blandr2017,
  title  = {{blandr}: a {Bland-Altman} method comparison package for {R}},
  author = {Deepankar Datta},
  year   = {2017},
  doi    = {10.5281/zenodo.824514},
  url    = {https://github.com/deepankardatta/blandr},
}

@Article{dagitty2016,
  author  = {Johannes Textor and Benito {van der Zander} and Mark S Gilthorpe and Maciej Liśkiewicz and George TH Ellison},
  journal = {International Journal of Epidemiology},
  title   = {Robust causal inference using directed acyclic graphs: the {R} package '{dagitty}'},
  year    = {2016},
  number  = {6},
  pages   = {1887--1894},
  volume  = {45},
  doi     = {10.1093/ije/dyw341},
}

@Book{knitr2015,
  author    = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  title     = {Dynamic documents with {R} and {knitr}},
  year      = {2015},
  address   = {Boca Raton, Florida},
  edition   = {2nd},
  note      = {ISBN 978-1498716963},
  url       = {https://yihui.org/knitr/},
}

@InCollection{knitr2014,
  author    = {Yihui Xie},
  booktitle = {Implementing reproducible computational research},
  publisher = {Chapman and Hall/CRC},
  title     = {{knitr}: A comprehensive tool for reproducible research in {R}},
  year      = {2014},
  editor    = {Victoria Stodden and Friedrich Leisch and Roger D. Peng},
  note      = {ISBN 978-1466561595},
  url       = {http://www.crcpress.com/product/isbn/9781466561595},
}

@Article{mirt2012,
  author  = {R. Philip Chalmers},
  journal = {Journal of Statistical Software},
  title   = {{mirt}: A multidimensional item response theory package for the {R} environment},
  year    = {2012},
  number  = {6},
  pages   = {1--29},
  volume  = {48},
  doi     = {10.18637/jss.v048.i06},
}

@Article{mirtCAT2016,
  author  = {R. Philip Chalmers},
  journal = {Journal of Statistical Software},
  title   = {Generating adaptive and non-adaptive test interfaces for multidimensional item response theory applications},
  year    = {2016},
  number  = {5},
  pages   = {1--39},
  volume  = {71},
  doi     = {10.18637/jss.v071.i05},
}

@Article{pROC2011,
  author  = {Xavier Robin and Natacha Turck and Alexandre Hainard and Natalia Tiberti and Frédérique Lisacek and Jean-Charles Sanchez and Markus Müller},
  journal = {BMC Bioinformatics},
  title   = {{pROC}: An open-source package for {R} and {S+} to analyze and compare {ROC} curves},
  year    = {2011},
  pages   = {77},
  volume  = {12},
}

@Book{rmarkdown2018,
  author    = {Yihui Xie and J.J. Allaire and Garrett Grolemund},
  publisher = {Chapman and Hall/CRC},
  title     = {{R} {Markdown}: The definitive guide},
  year      = {2018},
  address   = {Boca Raton, Florida},
  note      = {ISBN 9781138359338},
  url       = {https://bookdown.org/yihui/rmarkdown},
}

@Book{rmarkdown2020,
  author    = {Yihui Xie and Christophe Dervieux and Emily Riederer},
  publisher = {Chapman and Hall/CRC},
  title     = {{R} {Markdown} cookbook},
  year      = {2020},
  address   = {Boca Raton, Florida},
  note      = {ISBN 9780367563837},
  url       = {https://bookdown.org/yihui/rmarkdown-cookbook},
}

@Article{tidyverse2019,
  title = {Welcome to the {tidyverse}},
  author = {Hadley Wickham and Mara Averick and Jennifer Bryan and Winston Chang and Lucy D'Agostino McGowan and Romain François and Garrett Grolemund and Alex Hayes and Lionel Henry and Jim Hester and Max Kuhn and Thomas Lin Pedersen and Evan Miller and Stephan Milton Bache and Kirill Müller and Jeroen Ooms and David Robinson and Dana Paige Seidel and Vitalie Spinu and Kohske Takahashi and Davis Vaughan and Claus Wilke and Kara Woo and Hiroaki Yutani},
  year = {2019},
  journal = {Journal of Open Source Software},
  volume = {4},
  number = {43},
  pages = {1686},
  doi = {10.21105/joss.01686},
}

@Article{userfriendlyscience2017,
  author  = {Gjalt-Jorn Ygram Peters},
  journal = {PsyArXiv},
  title   = {Diamond plots: A tutorial to introduce a visualisation tool that facilitates interpretation and comparison of multiple sample estimates while respecting their inaccuracy},
  year    = {2017},
  url     = {https://psyarxiv.com/fzh6c},
}

@Manual{R-PredictABEL,
  title  = {{PredictABEL}: Assessment of risk prediction models},
  author = {Suman Kundu and Yurii S. Aulchenko and A. Cecile J.W. Janssens},
  note   = {R package version 1.2-4},
  year   = {2020},
  url    = {https://CRAN.R-project.org/package=PredictABEL},
}

@Manual{R-aMNLFA,
  title  = {{aMNLFA}: Automated fitting of moderated nonlinear factor analysis through the {Mplus} program},
  author = {Veronica Cole and Nisha Gottfredson and Michael Giordano},
  note   = {R package version 0.1},
  year   = {2018},
  url    = {https://CRAN.R-project.org/package=aMNLFA},
}

@Manual{R-mnlfa,
  title  = {{mnlfa}: Moderated nonlinear factor analysis},
  author = {Alexander Robitzsch},
  note   = {R package version 0.1-53},
  year   = {2019},
  url    = {https://CRAN.R-project.org/package=mnlfa},
}

@Manual{R-MOTE,
  title  = {{MOTE}: Effect size and confidence interval calculator},
  author = {Erin M. Buchanan and Amber M Gillenwaters and John E. Scofield and K. D. Valentine},
  note   = {R package version 1.0.2},
  year   = {2019},
  url    = {https://CRAN.R-project.org/package=MOTE},
}



@Article{Gneiting2020,
  author  = {Gneiting, Tilmann and Walz, Eva-Maria},
  journal = {arXiv:1912.01956v2},
  title   = {Receiver operating characteristic ({ROC}) movies, universal {ROC} ({UROC}) curves, and coefficient of predictive ability ({CPA})},
  year    = {2020},
}

@Manual{R-here,
  title  = {{here}: A simpler way to find your files},
  author = {Kirill Müller},
  note   = {R package version 1.0.1},
  year   = {2020},
  url    = {https://CRAN.R-project.org/package=here},
}

@Manual{R-rmarkdown,
  title  = {{rmarkdown}: Dynamic documents for {R}},
  author = {JJ Allaire and Yihui Xie and Jonathan McPherson and Javier Luraschi and Kevin Ushey and Aron Atkins and Hadley Wickham and Joe Cheng and Winston Chang and Richard Iannone},
  note   = {R package version 2.13},
  year   = {2022},
  url    = {https://CRAN.R-project.org/package=rmarkdown},
}

@Manual{Chalmers2022,
  title  = {mirt: Multidimensional item response theory},
  author = {Phil Chalmers},
  note   = {R package version 1.36.1},
  year   = {2022},
  url    = {https://CRAN.R-project.org/package=mirt},
}

@Manual{R-mirtCAT,
  title  = {{mirtCAT}: Computerized adaptive testing with multidimensional item response theory},
  author = {Phil Chalmers},
  note   = {R package version 1.12},
  year   = {2021},
  url    = {https://CRAN.R-project.org/package=mirtCAT},
}

@Manual{Cole2022,
  title  = {{aMNLFA}: Automated moderated nonlinear factor analysis using {M-plus}},
  author = {Veronica Cole and Nisha Gottfredson and Michael Giordano and Isabella Stallworthy and Meriah DeJoseph and Robin Sifre},
  note   = {R package version 1.1.2},
  year   = {2022},
  url    = {https://CRAN.R-project.org/package=aMNLFA},
}

@Manual{R-semPlot,
  title  = {{semPlot}: Path diagrams and visual analysis of various {SEM} packages' output},
  author = {Sacha Epskamp},
  note   = {R package version 1.1.5},
  year   = {2022},
  url    = {https://github.com/SachaEpskamp/semPlot},
}

@Manual{R-irrCAC,
  title  = {{irrCAC}: Computing chance-corrected agreement coefficients ({CAC})},
  author = {Kilem L. Gwet and {Ph.D.}},
  note   = {R package version 1.0},
  year   = {2019},
  url    = {https://CRAN.R-project.org/package=irrCAC},
}

@Manual{Harrell2022,
  title  = {rms: Regression modeling strategies},
  author = {Frank E. {Harrell, Jr.}},
  note   = {R package version 6.3-0},
  year   = {2022},
  url    = {https://CRAN.R-project.org/package=rms},
}

@Manual{R-rockchalk,
  title  = {{rockchalk}: Regression estimation and presentation},
  author = {Paul E. Johnson},
  note   = {R package version 1.8.151},
  year   = {2022},
  url    = {https://CRAN.R-project.org/package=rockchalk},
}

@Manual{R-semTools,
  title  = {{semTools}: Useful tools for structural equation modeling},
  author = {Terrence D. Jorgensen and Sunthud Pornprasertmanit and Alexander M. Schoemann and Yves Rosseel},
  note   = {R package version 0.5-5},
  year   = {2021},
  url    = {https://github.com/simsem/semTools/wiki},
}

@Manual{Kelley2022,
  title  = {{MBESS}: The {MBESS} {R} package},
  author = {Ken Kelley},
  note   = {R package version 4.9.0},
  year   = {2022},
  url    = {https://www3.nd.edu/~kkelley/site/MBESS.html},
}

@Manual{R-simsem,
  title  = {{simsem}: {SIMulated} structural equation modeling},
  author = {Sunthud Pornprasertmanit and Patrick Miller and Alexander Schoemann and Terrence D. Jorgensen},
  note   = {R package version 0.5-16},
  year   = {2021},
  url    = {http://www.simsem.org},
}

@Manual{R-base,
  title        = {{R}: A language and environment for statistical computing},
  address      = {Vienna, Austria},
  author       = {{R Core Team}},
  organization = {R Foundation for Statistical Computing},
  year         = {2022},
  url          = {https://www.R-project.org/},
}

@Manual{R-psych,
  title  = {{psych}: Procedures for psychological, psychometric, and personality research},
  author = {William Revelle},
  note   = {R package version 2.2.3},
  year   = {2022},
  url    = {https://personality-project.org/r/psych/},
}

@Manual{Robin2021,
  title  = {{pROC}: Display and analyze {ROC} curves},
  author = {Xavier Robin and Natacha Turck and Alexandre Hainard and Natalia Tiberti and Frédérique Lisacek and Jean-Charles Sanchez and Markus Müller},
  note   = {R package version 1.18.0},
  year   = {2021},
  url    = {http://expasy.org/tools/pROC/},
}

@Article{Robin2011,
  author  = {Xavier Robin and Natacha Turck and Alexandre Hainard and Natalia Tiberti and Frédérique Lisacek and Jean-Charles Sanchez and Markus Müller},
  journal = {BMC Bioinformatics},
  title   = {{pROC}: an open-source package for {R} and {S+} to analyze and compare {ROC} curves},
  year    = {2011},
  pages   = {77},
  volume  = {12},
}

@Article{Rosseel2012,
  author  = {Yves Rosseel},
  journal = {Journal of Statistical Software},
  title   = {{lavaan}: An {R} package for structural equation modeling},
  year    = {2012},
  number  = {2},
  pages   = {1--36},
  volume  = {48},
  doi     = {10.18637/jss.v048.i02},
  url     = {http://www.jstatsoft.org/v48/i02/},
}

@Manual{R-lavaan,
  title  = {{lavaan}: Latent variable analysis},
  author = {Yves Rosseel and Terrence D. Jorgensen and Nicholas Rockwood},
  note   = {R package version 0.6-11},
  year   = {2022},
  url    = {https://lavaan.ugent.be},
}

@Manual{R-ROCR,
  title  = {{ROCR}: Visualizing the performance of scoring classifiers},
  author = {Tobias Sing and Oliver Sander and Niko Beerenwinkel and Thomas Lengauer},
  note   = {R package version 1.0-11},
  year   = {2020},
  url    = {http://ipa-tys.github.io/ROCR/},
}

@Article{Sing2005,
  author  = {T. Sing and O. Sander and N. Beerenwinkel and T. Lengauer},
  journal = {Bioinformatics},
  title   = {{ROCR}: Visualizing classifier performance in {R}},
  year    = {2005},
  number  = {20},
  pages   = {7881},
  volume  = {21},
  entry   = {article},
  url     = {http://rocr.bioinf.mpi-sb.mpg.de},
}

@Manual{Tierney2021,
  title  = {{snow}: Simple network of workstations},
  author = {Luke Tierney and A. J. Rossini and Na Li and H. Sevcikova},
  note   = {R package version 0.4-4},
  year   = {2021},
  url    = {https://CRAN.R-project.org/package=snow},
}

@Manual{R-Cairo,
  title  = {{Cairo}: {R} graphics device using {Cairo} graphics library for creating high-quality bitmap ({PNG, JPEG, TIFF}), vector ({PDF, SVG, PostScript}) and display ({X11 and Win32}) output},
  author = {Simon Urbanek and Jeffrey Horner},
  note   = {R package version 1.5-15},
  year   = {2022},
  url    = {http://www.rforge.net/Cairo/},
}

@Manual{R-mice,
  title  = {{mice}: Multivariate imputation by chained equations},
  author = {Stef {van Buuren} and Karin Groothuis-Oudshoorn},
  note   = {R package version 3.14.0},
  year   = {2021},
  url    = {https://CRAN.R-project.org/package=mice},
}

@Article{vanBuuren2011,
  author  = {Stef {van Buuren} and Karin Groothuis-Oudshoorn},
  journal = {Journal of Statistical Software},
  title   = {{mice}: Multivariate imputation by chained equations in {R}},
  year    = {2011},
  number  = {3},
  pages   = {1-67},
  volume  = {45},
  doi     = {10.18637/jss.v045.i03},
  url     = {https://www.jstatsoft.org/v45/i03/},
}

@Manual{Wei2021,
  title  = {{corrplot}: Visualization of a correlation matrix},
  author = {Taiyun Wei and Viliam Simko},
  note   = {R package version 0.92},
  year   = {2021},
  url    = {https://github.com/taiyun/corrplot},
}

@Manual{R-corrplot,
  title  = {{R} package ``{corrplot}": Visualization of a correlation matrix},
  author = {Taiyun Wei and Viliam Simko},
  note   = {(Version 0.92)},
  year   = {2021},
  url    = {https://github.com/taiyun/corrplot},
}

@Manual{R-tidyverse,
  title  = {{tidyverse}: Easily install and load the {tidyverse}},
  author = {Hadley Wickham},
  note   = {R package version 1.3.1},
  year   = {2021},
  url    = {https://CRAN.R-project.org/package=tidyverse},
}

@Manual{R-readr,
  title  = {{readr}: Read rectangular text data},
  author = {Hadley Wickham and Jim Hester and Jennifer Bryan},
  note   = {R package version 2.1.2},
  year   = {2022},
  url    = {https://CRAN.R-project.org/package=readr},
}

@Manual{R-bookdown,
  title  = {{bookdown}: Authoring books and technical documents with {R} {Markdown}},
  author = {Yihui Xie},
  note   = {R package version 0.26},
  year   = {2022},
  url    = {https://CRAN.R-project.org/package=bookdown},
}

@Manual{R-knitr,
  title  = {{knitr}: A general-purpose package for dynamic report generation in {R}},
  author = {Yihui Xie},
  note   = {R package version 1.38},
  year   = {2022},
  url    = {https://yihui.org/knitr/},
}

@Manual{R-servr,
  title  = {{servr}: A simple {HTTP} server to serve static files or dynamic documents},
  author = {Yihui Xie},
  note   = {R package version 0.24},
  year   = {2021},
  url    = {https://github.com/yihui/servr},
}

@Manual{Xie2022,
  title  = {{tinytex}: Helper functions to install and maintain {TeX} {Live}, and compile {LaTeX} documents},
  author = {Yihui Xie},
  note   = {R package version 0.38},
  year   = {2022},
  url    = {https://github.com/yihui/tinytex},
}

@Book{Xie2016,
  author    = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  title     = {{bookdown}: Authoring books and technical documents with {R} {Markdown}},
  year      = {2016},
  address   = {Boca Raton, Florida},
  note      = {ISBN 978-1138700109},
  url       = {https://bookdown.org/yihui/bookdown},
}

@Article{Xie2019,
  author  = {Yihui Xie},
  journal = {TUGboat},
  title   = {{TinyTeX}: A lightweight, cross-platform, and easy-to-maintain {LaTeX} distribution based on {TeX} {Live}},
  year    = {2019},
  number  = {1},
  pages   = {30--32},
  url     = {https://tug.org/TUGboat/Contents/contents40-1.html},
  volumne = {40},
}

@Manual{R-tufte,
  title  = {{tufte}: Tufte's styles for {R} {Markdown} documents},
  author = {Yihui Xie and JJ Allaire},
  note   = {R package version 0.12},
  year   = {2022},
  url    = {https://github.com/rstudio/tufte},
}

@Manual{R-DT,
  title  = {{DT}: A wrapper of the {JavaScript} library {DataTables}},
  author = {Yihui Xie and Joe Cheng and Xianying Tan},
  note   = {R package version 0.22},
  year   = {2022},
  url    = {https://github.com/rstudio/DT},
}

@Book{Xie2018,
  author    = {Yihui Xie and J.J. Allaire and Garrett Grolemund},
  publisher = {Chapman and Hall/CRC},
  title     = {{R} {Markdown}: The definitive guide},
  year      = {2018},
  address   = {Boca Raton, Florida},
  note      = {ISBN 9781138359338},
  url       = {https://bookdown.org/yihui/rmarkdown},
}

@Book{Xie2020,
  author    = {Yihui Xie and Christophe Dervieux and Emily Riederer},
  publisher = {Chapman and Hall/CRC},
  title     = {{R} {Markdown} cookbook},
  year      = {2020},
  address   = {Boca Raton, Florida},
  note      = {ISBN 9780367563837},
  url       = {https://bookdown.org/yihui/rmarkdown-cookbook},
}

@Manual{R-kableExtra,
  title  = {{kableExtra}: Construct complex table with {kable} and pipe syntax},
  author = {Hao Zhu},
  note   = {R package version 1.3.4},
  year   = {2021},
  url    = {https://CRAN.R-project.org/package=kableExtra},
}

@Manual{R-lme4,
  title  = {{lme4}: Linear mixed-effects models using {Eigen} and {S4}},
  author = {Douglas Bates and Martin Maechler and Ben Bolker and Steven Walker},
  note   = {R package version 1.1-29},
  year   = {2022},
  url    = {https://github.com/lme4/lme4/},
}

@Manual{R-simstandard,
  title  = {{simstandard}: Generate Standardized Data},
  author = {W. Joel Schneider},
  note   = {R package version 0.6.3},
  year   = {2021},
  url    = {https://github.com/wjschne/simstandard},
}

@Manual{Ripley2022,
  title  = {MASS: Support Functions and Datasets for Venables and Ripley's MASS},
  author = {Brian Ripley},
  note   = {R package version 7.3-57},
  year   = {2022},
  url    = {http://www.stats.ox.ac.uk/pub/MASS4/},
}

@Manual{R-caret,
  title  = {{caret}: Classification and Regression Training},
  author = {Max Kuhn},
  note   = {R package version 6.0-92},
  year   = {2022},
  url    = {https://github.com/topepo/caret/},
}

@Book{Fox2019,
  author    = {John Fox and Sanford Weisberg},
  publisher = {Sage},
  title     = {An {R} companion to applied regression},
  year      = {2019},
  address   = {Thousand Oaks {CA}},
  edition   = {Third},
  url       = {https://socialsciences.mcmaster.ca/jfox/Books/Companion/},
}

@Manual{R-car,
  title  = {car: Companion to Applied Regression},
  author = {John Fox and Sanford Weisberg and Brad Price},
  note   = {R package version 3.1-0},
  year   = {2022},
  url    = {https://CRAN.R-project.org/package=car},
}

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