load_env

#!/bin/bash

# This file can be adjusted to specify the environment, most importantly 
# the python installation you want to use

#  ____        _   _
# |  _ \ _   _| |_| |__   ___  _ __
# | |_) | | | | __| '_ \ / _ \| '_ \
# |  __/| |_| | |_| | | | (_) | | | |
# |_|    \__, |\__|_| |_|\___/|_| |_|
#        |___/

# uncomment following to use a pyenv virtualenv
export PATH="${HOME}/.pyenv/bin:$PATH"
eval "$(pyenv init -)"
eval "$(pyenv virtualenv-init -)"
pyenv activate myenv3

# uncomment to use a virtual environment
#source /path/to/virtualenv/bin/activate

# by default, if nothing is activated, the default python 
# environment is used. We strongly discurage to setup esprit
# like this.



#  ____   _  _____ _   _ 
# |  _ \ / \|_   _| | | |
# | |_) / _ \ | | | |_| |
# |  __/ ___ \| | |  _  |
# |_| /_/   \_\_| |_| |_|
#                        

# Adjust your PATH and other environment variables associated with it in here
#  Esprit needs to find Mafft and FastTree in the PATH. The executables are 
#  assumed to be named mafft and FastTree. Uncomment and adjust the following
#  lines if this is not the case in your environment.
export PATH=$(pwd):/share/apps/genomics/mafft-7.310/bin:/share/apps/genomics/FastTree-2.1.10:$PATH
export MAFFT_BINARIES="/share/apps/genomics/mafft-7.310/libexec/mafft/"
if [ ! -s FastTree ] ; then
    ln -s $(which FastTreeMP) FastTree
fi