From f9fde74edd1158e7f317e15b22029bfa32cb5e7a Mon Sep 17 00:00:00 2001
From: Mayo Faulkner <mayo.faulkner@ucl.ac.uk>
Date: Tue, 3 Sep 2024 14:22:56 +0100
Subject: [PATCH] neurodsp -> ibldsp

---
 atlaselectrophysiology/alignment_with_easyqc.py | 2 +-
 atlaselectrophysiology/extract_files.py         | 2 +-
 atlaselectrophysiology/plot_data.py             | 2 +-
 dlc/DLC_labeled_video.py                        | 2 +-
 needles2/probe_model.py                         | 2 +-
 viewspikes/gui.py                               | 4 ++--
 6 files changed, 7 insertions(+), 7 deletions(-)

diff --git a/atlaselectrophysiology/alignment_with_easyqc.py b/atlaselectrophysiology/alignment_with_easyqc.py
index 452bd98c..8d372af8 100644
--- a/atlaselectrophysiology/alignment_with_easyqc.py
+++ b/atlaselectrophysiology/alignment_with_easyqc.py
@@ -1,5 +1,5 @@
 from easyqc.gui import viewseis
-from neurodsp import voltage
+from ibldsp import voltage
 import neuropixel
 from viewspikes.data import stream
 from viewspikes.plots import overlay_spikes
diff --git a/atlaselectrophysiology/extract_files.py b/atlaselectrophysiology/extract_files.py
index 8acaf426..90920448 100644
--- a/atlaselectrophysiology/extract_files.py
+++ b/atlaselectrophysiology/extract_files.py
@@ -4,7 +4,7 @@
 from tqdm import tqdm
 import spikeglx
 import numpy as np
-from neurodsp import fourier, utils
+from ibldsp import fourier, utils
 from scipy import signal
 import one.alf.io as alfio
 import ibllib.ephys.ephysqc as ephysqc
diff --git a/atlaselectrophysiology/plot_data.py b/atlaselectrophysiology/plot_data.py
index b0214e62..d024873e 100644
--- a/atlaselectrophysiology/plot_data.py
+++ b/atlaselectrophysiology/plot_data.py
@@ -4,7 +4,7 @@
 from brainbox.io.spikeglx import Streamer
 from brainbox.population.decode import xcorr
 from brainbox.task import passive
-from neurodsp import voltage
+from ibldsp import voltage
 import neuropixel
 import scipy
 from PyQt5 import QtGui
diff --git a/dlc/DLC_labeled_video.py b/dlc/DLC_labeled_video.py
index 884ebd57..624bef2d 100644
--- a/dlc/DLC_labeled_video.py
+++ b/dlc/DLC_labeled_video.py
@@ -7,7 +7,7 @@
 import pandas as pd
 # conda install -c conda-forge pyarrow
 import os
-from neurodsp.smooth import smooth_interpolate_savgol
+from ibldsp.smooth import smooth_interpolate_savgol
 from brainbox.io.one import SessionLoader
 from copy import deepcopy
 
diff --git a/needles2/probe_model.py b/needles2/probe_model.py
index 78c042b3..b486c772 100644
--- a/needles2/probe_model.py
+++ b/needles2/probe_model.py
@@ -12,7 +12,7 @@
 from iblatlas import atlas
 from neuropixel import TIP_SIZE_UM, trace_header
 from ibllib.pipes.ephys_alignment import EphysAlignment
-from neurodsp.utils import fcn_cosine
+from ibldsp.utils import fcn_cosine
 
 PROV_2_VAL = {
     'Resolved': 90,
diff --git a/viewspikes/gui.py b/viewspikes/gui.py
index 32313bf6..4219b9ad 100644
--- a/viewspikes/gui.py
+++ b/viewspikes/gui.py
@@ -7,7 +7,7 @@
 
 from iblutil.numerical import bincount2D
 from viewephys.gui import viewephys
-import neurodsp
+import ibldsp
 from brainbox.io.one import EphysSessionLoader, SpikeSortingLoader
 from iblatlas.atlas import BrainRegions
 
@@ -134,7 +134,7 @@ def show_ephys(self, t0, tlen=1):
 
         sos = scipy.signal.butter(**butter_kwargs, output='sos')
         butt = scipy.signal.sosfiltfilt(sos, raw)
-        destripe = neurodsp.voltage.destripe(raw, fs=self.sr.fs)
+        destripe = ibldsp.voltage.destripe(raw, fs=self.sr.fs)
 
         self.eqc_raw = viewephys(butt, self.sr.fs, channels=self.channels, br=regions, title='butt', t0=t0, t_scalar=1)
         self.eqc_des = viewephys(destripe, self.sr.fs, channels=self.channels, br=regions, title='destripe', t0=t0, t_scalar=1)