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BedExtend tool help

BedExtend (2024_08-113-g94a3b440)

Extends the regions in a BED file.

Mandatory parameters:
  -n <int>          The number of bases to extend (on both sides of each region).

Optional parameters:
  -in <file>        Input BED file. If unset, reads from STDIN.
                    Default value: ''
  -out <file>       Output BED file. If unset, writes to STDOUT.
                    Default value: ''
  -fai <file>       Optional FASTA index file that determines the maximum position for each chromosome.
                    Default value: ''

Special parameters:
  --help            Shows this help and exits.
  --version         Prints version and exits.
  --changelog       Prints changeloge and exits.
  --tdx             Writes a Tool Definition Xml file. The file name is the application name with the suffix '.tdx'.
  --settings [file] Settings override file (no other settings files are used).

BedExtend changelog

BedExtend 2024_08-113-g94a3b440

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