Infer nesting on load broken

[ugurdogrusoz]

Both the public and the daily build is broken. Nodes inside compartments gets placed in weird location when nesting is infered.

[hasanbalci]

SBGNViz.js processes the nodes in the order in which they are on the input file. It seems that the problem occurs when a node is processed (and so given to cytoscape.js) before its compartment. This may be a cytoscape.js related issue (that exists in the version we use), because it reminds me a similar issue cytoscape/cytoscape.js#2802 that is related with the processing order of the elements. When all nodes are processed after their compartments, then input file is loaded correctly. I'll investigate the problem in detail and try to find an easy fix.

[ugurdogrusoz]

Let's revisit this at a later point.