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Investigate use of igv-reports for genomic review of candidates #706

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malachig opened this issue Sep 21, 2021 · 1 comment
Open

Investigate use of igv-reports for genomic review of candidates #706

malachig opened this issue Sep 21, 2021 · 1 comment
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@malachig
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https://github.com/igvteam/igv-reports

Would be amazing if we could link out from pvacview rows to pre-generated igv-report files showing the DNA/RNA support for each variant.
@chrisamiller
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There is also https://github.com/brentp/jigv

Maybe these should be generated in the somatic workflow for all vars, then the immuno workflow could copy or softlink the ones that were top candidates? (genome/analysis-workflows#1032)

@malachig malachig added the grant label Apr 28, 2023
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@chrisamiller @malachig